RNA id: TU127264


Basic Information

Item Value
RNA id TU127264
length 882
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G107663
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30864310 ~ 30865934 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACTGATGAAACCGGGTCTTTTCATTCTTATATACAATGAATGGCAGTAAGTCTGAAAGTaattaaacagttttatttttaagatgaaCAAAAACGAATCTGAGGTTGATCCTGAATCCACGGCGGATGCATGTCATGGTAAATGTGTATGTAGcgctgtgtaacacacacacacacacacacacacacacacacacacacacgcgtctCACAAAGCGGGTTGGTTTTTATCCGATGTACGGCGATGATGAGGCTCTGAGTCCGAGGTCGTACCTTCACACGACAGTTTGGTGGAGGCGAGGCCGAGGCGCAGCAGCGAGCGATTCGCGATCAGTCCGTCCTTCAGCTTGAGCACGCCCTCGTTACCAACCGCATTGTGTCCAAGATTCAGAGTCTCCAAACTCTGAGTACAcggcagtGCAGAAGCGAGGTAGCCCATGCCGTTGTGTGTGAGCTGGTTGTTCCAGAGCACCAGAGTGATCAGACCTTTCCTCTGTTCCTTCAGACCCTCACAGATATACGCCAAccctgtgtacacacacacacgcacacacacacgcgcgcgcacgcacacacacgcacacacggtTGCAGGTATTAGACCTGGTTAGGAAGTCTGAGGAAAATTAAGCGACTGTGTAAATAACTGTATATTCTCTCGCTATAATTAACACAGAGGACCAGTGAAGTAAcagtaattaatcagtaattaatcagtaattaaaGAGTTATTAAACAGATTATTCAACAGTTATTGTCACGTCTAGAGGTTTGagaataaacattaaaacacaaagcCAATCACCTCACATGGCATCGTGTGATTACACTAACCCTGCTCTGCCCTCAGTGCCACACTGCACTCTGGGTAAATCCATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127261 lncRNA upstream 2463 30860198 ~ 30861847 (+) True G107660
TU127258 lncRNA upstream 4414 30854613 ~ 30859896 (+) False G107659
TU127256 lncRNA upstream 10205 30850541 ~ 30854105 (+) True G107658
TU127254 lncRNA upstream 15836 30847959 ~ 30848474 (+) True G107657
XR_003402817.2 lncRNA upstream 34647 30828076 ~ 30829663 (+) True LOC113526871
TU127265 lncRNA downstream 30290 30896224 ~ 30898060 (+) True G107664
TU127279 lncRNA downstream 33166 30899100 ~ 30899679 (+) True G107677
TU127294 lncRNA downstream 100792 30966726 ~ 30967031 (+) True G107690
TU127295 lncRNA downstream 100792 30966726 ~ 30967031 (+) False G107690
TU127303 lncRNA downstream 128656 30994590 ~ 31002241 (+) True G107697
XM_034305382.1 mRNA upstream 38344 30816547 ~ 30825966 (+) True LOC113526343
XM_034305495.1 mRNA upstream 52335 30808138 ~ 30811975 (+) True arf5
XM_034305092.1 mRNA upstream 89343 30760394 ~ 30774967 (+) False terb1
XM_034305112.1 mRNA upstream 89343 30761580 ~ 30774967 (+) False terb1
XM_034305108.1 mRNA upstream 90391 30760383 ~ 30773919 (+) False terb1
XM_034305000.1 mRNA downstream 109775 30975709 ~ 30985960 (+) True pgr
XM_026911260.2 mRNA downstream 110092 30976026 ~ 30985960 (+) False pgr
XR_004578358.1 other upstream 2702441 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2702441 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2702441 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2793625 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2902539 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile