RNA id: TU127304


Basic Information

Item Value
RNA id TU127304
length 388
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G107698
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30996273 ~ 30998215 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTAtccctcTatccctctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTtatccctctatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACtccctctatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTAtccctctatccctctatccatctatccatc

Function

GO:

id name namespace
GO:0047961 glycine N-acyltransferase activity molecular_function
GO:0015103 inorganic anion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127294 lncRNA upstream 29242 30966726 ~ 30967031 (+) True G107690
TU127295 lncRNA upstream 29242 30966726 ~ 30967031 (+) False G107690
TU127279 lncRNA upstream 96594 30899100 ~ 30899679 (+) True G107677
TU127266 lncRNA upstream 98213 30865397 ~ 30898060 (+) False G107664
TU127656 lncRNA downstream 275017 31273232 ~ 31273507 (+) True G107966
XM_034305000.1 mRNA upstream 10313 30975709 ~ 30985960 (+) True pgr
XM_026911260.2 mRNA upstream 10313 30976026 ~ 30985960 (+) False pgr
XM_034305382.1 mRNA upstream 170307 30816547 ~ 30825966 (+) True LOC113526343
XM_034305495.1 mRNA upstream 184298 30808138 ~ 30811975 (+) True arf5
XM_034305112.1 mRNA upstream 221306 30761580 ~ 30774967 (+) False terb1
XR_004578358.1 other upstream 2834404 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2834404 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2834404 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2925588 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 3034502 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile