RNA id: TU127656


Basic Information

Item Value
RNA id TU127656
length 276
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G107966
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 31273232 ~ 31273507 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAAGACTCCACCTCCTCCTGGCGACCAGGTGATGACATTGTCCACGCACAGCGTGAAGAGATCCCTCAGCAGGATCAACGCACGCAAAGCTCCGggtcctgacaacatacctggtCATGTACTGAGAGACTGTGCAGTAGAACTCACTGATGTCTTCACAGACATATTTAACATCTCACTTAGTCAGGCTGTTGTTCCCACATGCTTCAAAGCCACCACCATCATTCCAGTCCCGAAGAAGTCGTCACCCTCCTGCTTCAATTACTACCGTCCG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127303 lncRNA upstream 270991 30994590 ~ 31002241 (+) True G107697
TU127304 lncRNA upstream 275017 30996273 ~ 30998215 (+) True G107698
TU127309 lncRNA upstream 275017 30996273 ~ 30998215 (+) False G107698
TU127307 lncRNA upstream 276363 30996273 ~ 30996869 (+) False G107698
TU127308 lncRNA upstream 276644 30996273 ~ 30996588 (+) False G107698
XM_034305000.1 mRNA upstream 287272 30975709 ~ 30985960 (+) True pgr
XM_026911260.2 mRNA upstream 287272 30976026 ~ 30985960 (+) False pgr
XM_034305382.1 mRNA upstream 447266 30816547 ~ 30825966 (+) True LOC113526343
XM_034305495.1 mRNA upstream 461257 30808138 ~ 30811975 (+) True arf5
XM_034305112.1 mRNA upstream 498265 30761580 ~ 30774967 (+) False terb1
XR_004578358.1 other upstream 3111363 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 3111363 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 3111363 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 3202547 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 3311461 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile