RNA id: XM_026911260.2


Basic Information

Item Value
RNA id XM_026911260.2
length 2375
RNA type mRNA
GC content 0.53
exon number 8
gene id pgr
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30975709 ~ 30985960 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgtgtatttttgtgtattttgtgtatttttgtatcaGTGTGTAATCCTATTTAAAGTGTTTGAACTGACTTTATGgtttgagagagacagacccaCATTTAGAGGAGTGAAGTCTGTGCTACTCCCAGGCTTCACCAGCAGGAGGGAGTTTTGTGGTTTTTGGGGAAGGTCCTCGTCCGCGTCTGGAGgcgcagcagcagcacaggATCCGCGGAACGGAAGCTGTAGGGAAGCTGCGGCTGCATGGAGACTGTGAGCAGCAGCATGTCGGATTCCTCACACAGCCCCGGAGTGAGTGATGTGATGGAGACGTACACGCAGGTGAGCTTCGGGCAGGTGAAGAACGGCGCGGATGTGGCGCGTGTGTCGTGCCTCGCGCGCAGTTTCGGTGACGTGGATCCGCTGTGCGTTCTGTCCGCCCCGAACCCCGGCGGCGCGAGCCAGGACCGCGCGGAGGACTTTCTGAAAATCGAACCGGGACCGTGGGAGGACATCACGGACAAAGCGTTCTCCTTCAAGGAGACCACGAACTTAGAAATCTCCACCACAGACGCGTGTAAGTTTATTAAAGACGAGCGGGAACCGGCGCTGATCACGGCTCCTCCGCGCGCCGCCTTCGACATTTCGCAGAGTATCGACGCGCTGGATATCGCCGTGTCCGCCGCTTCCCTCGCCCCGGTCCAGGCGCCGCTGATGGACTCCAGCGCGGGAGTCATGGTGGATATTCCTCAGCCGGGTGCGGTAGTGCCTCTGCCCCAGATGAAGCCCGAGGCGGCCGCTGCGCTCGGCTTTGACGCGGCGGCAGTGTGTAAGAGTCAGATGGGAGGATGGGACTCGCACCTGTGGTTTTCCGCCGCGCTGGCTGAGGAGCGGCCCGGGCAGATGAGCTTCTCACCTCCGGAAGGCATCCACAGCTCGGGCTTCATACAGCGCTCTCCCGCGGTGTTCAGCGCCTTCCCGGGCGTGCATACACAGAGAGCGTGTGTGATCTGCGGAGACGAGGCTTCGGGATGCCACTACGGAGTCCTGACGTGTGGAAGCTGCAAGGTGTTCTTCAAGAGAGCAGTGGAAGGACATCATAACTATTTGTGCGCCGGGCGGAATGACTGCATTGTGGATAAGATCAGGAGGAAAAACTGCCCTGCGTGTCGTCTCAGAAAATGCTACCAGGCCGGGATGATGCTCGGAGgtCGTAAGTTGAAGAGATTCGGTGTTCTGAAGGCCATGGGTGTCGGCCCGTCCCTGATGTTCCAGGGCCACGCTTTGGCCTCCATGCCATGCGTTCCTGGGATCCAAGAGCTGCAGTTTTCACCTCAATTTATAAACATCCTTGAGAACATTGAACCTGAGATGGTCTACTCGGGCTTTGATAACTCCCAACTTGAACTGCCACATGTGCTCCTGAACAGCCTgaacagactgtgtgagagACAGCTGCTGTGGATCGTCCGCTGGTCCAAGGCTTTACCAGGTTTCCGCAATTTACACATCACCGATCAGATGACCCTGATCCAGTACTCCTGGATGAACCTGCTGGTGTTCTCTCTGGGCTGGAGAACCTTCCAGAACGTCTCCACTGATTTCATGTACTTTGCTCCTGATCTCATCCTCAGCCATGACCGGCTGAGGACGACTCCGATATACGACCTGTGCTTGGCCATGCAGGTGATCCCTCAGGAGTTCGCAAGGCTGCAGGTCACCAGAGACGAGTTTCTGTGCATGAAGGCCCTGATGCTGCTCAACACcgttCCTTTAGAGGGTTTGAAGAGTCAAAGCCAGTTTGATGAGATGAGACAGAACTACATCCGAGAGCTGAGTAAAGCCATCCAGATGAAGGAGAAAGGTGTGGTGGGAAGCTCACAGCGTTTCTACCACCTCACCAAACTCATGGACTCCATGCATGAGATAGTGAAGAAGGTCAACCTGTACTGCCTCAGCACCTTCATCCAGGCCGACGCCATGAAGGTGGAGTTTCCCGAGATGATGTCAGAGGTCATCGCGTCACAGCTCCCGAAGGTTCTGGCCGGCATGGTCAGGCCCCTCCTCTTTCACGGGAAATGATGTCATGACACAGTGGAGTGGATTGTGGGATACGGACGAGTGCCTTTCAGCTTTCGGCTCAGAGACGAGATCtgggagaattttttttttttttatgctctCATGGAGAAAGATGTGTAATGGGTCCATCACTGCTTTTGTTCTGATGTTTAGAAGataaaaatttaacattttctgtaattGTCTCTCTGAGGAACATCTCAGTCCTACGGTATAATTCCCTGGTGGCAAATTTACAACTAAAACACCACTTTATATGTTacacttcatctttttttaaaaaaaaaaaaaaaaaaaaaggactccATCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127294 lncRNA upstream 8995 30966726 ~ 30967031 (+) True G107690
TU127295 lncRNA upstream 8995 30966726 ~ 30967031 (+) False G107690
TU127279 lncRNA upstream 76347 30899100 ~ 30899679 (+) True G107677
TU127266 lncRNA upstream 77966 30865397 ~ 30898060 (+) False G107664
TU127303 lncRNA downstream 8630 30994590 ~ 31002241 (+) True G107697
TU127304 lncRNA downstream 10313 30996273 ~ 30998215 (+) True G107698
TU127307 lncRNA downstream 10313 30996273 ~ 30996869 (+) False G107698
TU127308 lncRNA downstream 10313 30996273 ~ 30996588 (+) False G107698
TU127309 lncRNA downstream 10313 30996273 ~ 30998215 (+) False G107698
XM_034305382.1 mRNA upstream 150060 30816547 ~ 30825966 (+) True LOC113526343
XM_034305495.1 mRNA upstream 164051 30808138 ~ 30811975 (+) True arf5
XM_034305092.1 mRNA upstream 201059 30760394 ~ 30774967 (+) False terb1
XM_034305112.1 mRNA upstream 201059 30761580 ~ 30774967 (+) False terb1
XM_034305108.1 mRNA upstream 202107 30760383 ~ 30773919 (+) False terb1
XR_004578358.1 other upstream 2814157 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2814157 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2814157 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2905341 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 3014255 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile