RNA id: XM_026913269.2


Basic Information

Item Value
RNA id XM_026913269.2
length 3616
RNA type mRNA
GC content 0.46
exon number 22
gene id LOC113526325
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26850962 ~ 26875332 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcaggagcaACAGTTACACAGGAAGCAATAAGCAATAAACTGCACCGCAATCCACCGCAACTGATCCAATGGACATCAAAGGCCAGTGTTGGACGGATGAGGAATCAGATGGAGATAATGAGCCTGAGCAGTTCCTCTATGGAATTCAGGGGAGCTGTGCAGCTGATTTGTATCGCCATCCCCAACTAGACGCTGACATCGAGGCTGTGAAAGACATTTACACGGATAGTGCCATATCAGTCAGAGAATACGGCACAATTGATGACGTGGATATCGACCTTCATATCAACATCAGCTTCCTGGATGAGGAAGTTGCGACAGCATGGAAGGTCATCCGAACAGAGCCCATCATCCTCCGCCTCCGCTTCTCCCTCTCGCAGTATTTGGATGGACCTGAACCCTCGGTCGAAGTATTTCAGCCCTCTAATAAAGATGGATTCAGCCTTGGACTTCAGCTGAAGAAGATCCTGAGCACCTTCATTTCTCAGCAATGGAAACACCTGAGTAATGAGTTCCTGAAAGTTCAGCAGGAGAAGAGGCACAGCTGGTTCAAGGCTGGTGGGACTATAAAGAAGTTTCGTGCAGGCCTCAGCATCTTCTCCCCCATCCCTAAATCTCCCAGTTTCCCGTTGATCCAGGACACGGCGCTGAAGGGTAAACTGAACGTGCCTGAGCTGAGAATGACCCGTCTTATGAACCGCTCCATCTCCTGCACCATGAAGAACCCAAAGGGGGAGCTGTTCAGTTATCCCCCCAACAGTCAGACTGTGGCAGTCCCGGCGGGCAGGGCCCCGGCGCAGATTACCACGCGGCAGCTGATTGAATTGTTTTTCTCATCCCAGGCGGGCGGCCACTGCAAGAACATCCCCACTCTGGAGTACGGTTTCTTAGTGCAGATAATGAAGTATTCTGAGCAGCGGATCCCGACACTGAATGAgtactgtgtggtgtgtgatgagcaGCACGTCTTTCAGAATGGCTCTATGCTCaagCCTGCAGTATGCAccagagagctgtgtgtgttctctttttATACTTTGGGAGTGATGTCAGGTGCAGCTGAAGAGGTGGCTACAGGAGCTGAGGTTGTGGATCTTCTAGTTGCCATGTGTAGAGCTGCTCTAGAGTCTCCCCGGAAGAGCATCATCTTTGAGCCATATCCCTCAGTAGTCGACCCCAATGACCCCAAAACCCTCGCCTTTAACCCCAAGaagaaaaattatgaaagACTGCAGAAGGCGCTAGACAGTGTTATGTCCATACGAGAAATGACCCAGGGATCTTATttggaaataaagaaacaaatggATAAACTGGACCCCCTGGCTCATCCTCTACTACAGTGGATAATATCCAGTAACAGGTCTCATATAGTCAAACTGCCTCTGAGTAGGCAGCTGAAGTTTATGCATACGTCCCATCAGTTTTTGCTCCTGAGCAGCCCACCTGCCAAAGAAGCTCGATTTCGGACAGCCAAGAAGCTCTACGGCAGCACCTTTGCATTTCATGGTTCTCATATCGAGAACTGGCACTCTGTTCTGAGAAATGGACTAGTCAATGCCTCCTATACCAAATTACAGCTGCATGGGGCAGCCTATGGGAAGGGCATCTATCTCAGCCCCATCTCCAGCATATCTTTTGGATATTCAGgaatGGGTAAAGGACAACACCGAATGCCGACTAAAGATGAACTGGTGCAGCGCTATAACCGTATGAACACAATCCCACAGagtcgCCCGATTCAGTCACGCTTCCTACAGAGTCGGAATCTGAACTGCATTGCACTTTGTGAAGTGATCACATCCAAGGACCTCCAGAAACATGGAAACATCTGGGTGTGTCCTGTTTCAGACCACGTGTGCACACGCTTCTTCTTTGTaTATGAAGATGGCCAGGTAGGAGATGCTAACATCAACACCCAGGAGCCCAAGGTGCAGAAGGAGATCATGCGTGTGATTGGCACTCAGATCTACTCTGGCTGAGAGGGAACCTCTGGGCCATCTGCAGGGACTCAGCACTGCAGAACCAGCTGTAGCGCCTTAGCTTTTGCTCAGAGTGAAGAAGCAGGAGAGCCGAACCTTTCAATCCCCCTCTGTCCTTCCCTGTGCTTCTCTtctgccttttttctttcttcttttcctggCTTTCATGAGGAGGTTTGGATGTGCGTCCCCTCCCTTCTCCCTGTGTGGTTTGTCCTGTTCAGGGCAGCTGAGACTGATGGaccatcctcttcctcctcccatAGCAGGAAGTGATTTGAAAGTATAATGCCTGAGCAAACTTCATGTGGAAGTATTTTATATGGCACACTATAAAGAGCCAACTTTTGGCACACTGTGCAcataggcagtttcacagccaGCGAATGCTAACGAGGGAACAGAATTTCACACGACTCATGGCTCAGACTCTCATCTACGTGCCACCTCCTTCCAGAGCGATGGATGAGATGCCTGATTGGATCCCTAAATCTGTCAATCAAACTGATGTGAACTCACCCAAGCATGGGCTGCTATCTTTCTATCCTCGGACACTCGGTTTCATTTCCTTTCAGTCCTGAGCTTAATAACCGTATCGTTCCGTCTCCACTCTTCGACTCTTTATAGCTCTCTCATACACCAAACATTTATCATTCAGAATATCTATAAATacaaagtaatttaaaaaaactttattatatttctggTCTCTGGATCGTAAGCGACGGATCTTCTCGCACCCTTATTGCGTTTGTAAAAAAATCCTCGTCTTGATCTGTTTACTTTCATATTCTTTGAGTAATGGCGTATTAATATCCAAGATGCGGTTATCTCCGGGGCTGCTGTTGTTCAGCTACTCCTTCTGGTAAAAtcaatttccttttcttttgtctCCGGTGCACAGCATGGCAGAAACACGAACGCGAACATGCACGCACGCGCGCTGGAAAGATGTTTACTGCAATTTATCAGTGGGAGCATGGGTGCTTCTGTTTGACAAATGAAATAACGAAATTTCATTATTGCTCATATTCACAGCTATTCCTCCTAATCACTGGTTTCTCTAATTTCATTATGTCCTGGGCGGGAAAAGCTCACTGACAAGGTCATTTAACATAAATCGAAGAAATCAAAACCTCATTTAACGTTCCTTAACAGCTACGGTTATGGACACAGCCTATTTCTTCGTAGTATATAACTGGGCTGCCTCTTATCCTCCAGCTgttcttctttttaaatatattcctTCAGCTTGGTGTGATTTATGAAAATGCTGTGCAGCCTAACTGTGTGTTTCTCCACATACAAGGTTGTATATTCAACCAGTGGAGTCTGTTATCACTTAAACAAACCTACAAACGTAACAAGTGAACTAACACTCTGGACTTAATGAATGTTGAAGCTGTATGGAAGGATTTTATTGAATGCAAGCGGGTTGTAAATAAAATCTCGGTGTTAACAGCAGACGATGAAACAGCTTAGCCGTCTTTCGTCTCCTATACAGGCTCCTGGTTGCATTTATGTTGGTCCAGTtctgttttattgcttttattgtgTGTCAGTGCTCGGTGTAAAAACTGAGCCGATAAAAAGCAGTAACCACATGAACGAATAAAGAGACCTTGTGCACAGTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124808 lncRNA upstream 156282 26697978 ~ 26698178 (+) True G105548
TU124739 lncRNA upstream 162783 26691434 ~ 26691677 (+) True G105490
TU124727 lncRNA upstream 243200 26610941 ~ 26611260 (+) True G105479
TU124690 lncRNA upstream 322372 26531335 ~ 26532088 (+) True G105449
TU124691 lncRNA upstream 326653 26525920 ~ 26527807 (+) True G105450
TU125000 lncRNA downstream 188023 27063355 ~ 27063862 (+) True G105733
TU124999 lncRNA downstream 189359 27064691 ~ 27066023 (+) True G105732
TU125117 lncRNA downstream 254016 27129348 ~ 27129629 (+) True G105841
TU125136 lncRNA downstream 266513 27141845 ~ 27145031 (+) True G105855
TU125251 lncRNA downstream 354452 27229784 ~ 27234224 (+) True G105904
XM_026913392.2 mRNA upstream 27438 26821167 ~ 26827022 (+) True dhdh.2
XM_026913470.2 mRNA upstream 65205 26694883 ~ 26789255 (+) True hcn4
XM_026913539.2 mRNA upstream 173035 26648551 ~ 26681425 (+) True nptnb
XM_034304945.1 mRNA downstream 37996 26913328 ~ 27063061 (+) True si:dkey-205h23.2
XM_034304949.1 mRNA downstream 37996 26913328 ~ 27063061 (+) False si:dkey-205h23.2
XM_034304947.1 mRNA downstream 37996 26913328 ~ 27063061 (+) False si:dkey-205h23.2
XM_034304951.1 mRNA downstream 37996 26913328 ~ 27063061 (+) False si:dkey-205h23.2
XM_034304952.1 mRNA downstream 37996 26913328 ~ 27063061 (+) False si:dkey-205h23.2
TU124829 other upstream 21033 26830978 ~ 26833427 (+) True G105569
TU123982 other upstream 1539247 25294899 ~ 25315213 (+) False G104781
TU123976 other upstream 1547649 25294899 ~ 25306811 (+) True G104781
TU122935 other upstream 3112145 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 3224737 23615103 ~ 23629723 (+) True G103830
TU125244 other downstream 336057 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 683504 27558836 ~ 27558946 (+) True trnal-caa_8
trnal-caa_9 other downstream 685055 27560387 ~ 27560497 (+) True trnal-caa_9
XR_003402810.2 other downstream 1069458 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other downstream 1084193 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile