Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026913309.2 |
| length | 1043 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 7 |
| gene id | pdcd5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 28071684 ~ 28078887 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0003677 | DNA binding | molecular_function |
| id | description |
|---|---|
| K06875 | PDCD5, TFAR19; programmed cell death protein 5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU125500 | lncRNA | upstream | 342523 | 27726402 ~ 27729161 (+) | True | G106118 |
| TU125432 | lncRNA | upstream | 468950 | 27602158 ~ 27602734 (+) | True | G106064 |
| TU125360 | lncRNA | upstream | 526167 | 27543059 ~ 27545517 (+) | False | ddx11 |
| TU125340 | lncRNA | upstream | 573054 | 27498431 ~ 27498630 (+) | True | G105981 |
| TU125251 | lncRNA | upstream | 837460 | 27229784 ~ 27234224 (+) | True | G105904 |
| TU125760 | lncRNA | downstream | 18842 | 28097729 ~ 28098001 (+) | True | G106343 |
| XR_004578326.1 | lncRNA | downstream | 154920 | 28233807 ~ 28244868 (+) | True | LOC117597547 |
| XR_004578327.1 | lncRNA | downstream | 154920 | 28233807 ~ 28244868 (+) | False | LOC117597547 |
| TU125917 | lncRNA | downstream | 311311 | 28390198 ~ 28450197 (+) | True | G106477 |
| XR_003402825.2 | lncRNA | downstream | 351116 | 28430003 ~ 28448635 (+) | True | LOC113526961 |
| XM_026914079.2 | mRNA | upstream | 1056 | 28066882 ~ 28070628 (+) | False | uraha |
| XM_034305052.1 | mRNA | upstream | 1056 | 28066898 ~ 28070628 (+) | False | uraha |
| XM_026914080.2 | mRNA | upstream | 1056 | 28066902 ~ 28070628 (+) | False | uraha |
| XM_026913512.2 | mRNA | upstream | 8535 | 27990564 ~ 28063149 (+) | True | LOC113526465 |
| XM_026913513.2 | mRNA | upstream | 8535 | 28002308 ~ 28063149 (+) | False | LOC113526465 |
| XM_026914143.2 | mRNA | downstream | 2110 | 28080997 ~ 28088425 (+) | True | mvda |
| XM_026914364.2 | mRNA | downstream | 10491 | 28089378 ~ 28095826 (+) | True | LOC113526918 |
| XM_026914374.2 | mRNA | downstream | 19509 | 28098396 ~ 28114961 (+) | True | tcf25 |
| XM_026914242.2 | mRNA | downstream | 40137 | 28119024 ~ 28123920 (+) | True | mc1r |
| XM_034305483.1 | mRNA | downstream | 40137 | 28119024 ~ 28123920 (+) | False | mc1r |
| TU125683 | other | upstream | 999 | 28066912 ~ 28070685 (+) | True | uraha |
| XR_003402810.2 | other | upstream | 105376 | 27944790 ~ 27966308 (+) | True | LOC113526832 |
| TU125656 | other | upstream | 109913 | 27959525 ~ 27961771 (+) | False | LOC113526832 |
| trnal-caa_9 | other | upstream | 511187 | 27560387 ~ 27560497 (+) | True | trnal-caa_9 |
| trnal-caa_8 | other | upstream | 512738 | 27558836 ~ 27558946 (+) | True | trnal-caa_8 |
| XR_004578358.1 | other | downstream | 67376 | 28146263 ~ 28161869 (+) | False | def8 |
| XR_004578357.1 | other | downstream | 67376 | 28146263 ~ 28161869 (+) | False | def8 |
| XR_004578359.1 | other | downstream | 67376 | 28146263 ~ 28161869 (+) | False | def8 |
