RNA id: XM_026913326.2


Basic Information

Item Value
RNA id XM_026913326.2
length 2878
RNA type mRNA
GC content 0.49
exon number 15
gene id pak1
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23346830 ~ 23414735 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caccacacacactcacacacacacacacacacactcagactcacTCATACTCTCAGAACACTCGCTAGTGTTTTGGTCTTGagctgttactgttactgctgaaAACATACGGCTGAATTGAAGGCCAGTATGTGTTGAGagctAGCTGCTTCTGCACTACGTGATGTCCGATAACGGAGAAGTGGAGGACAAGCCGCCTGCACCACCCATGAGGAACACCAGCACCATGATGGGATCCAGTATCAAAGAGCCGAGCACAATGAACCACACCTCCAAACCACTGCCGCCCAATCCGGAGGACAAGAAGCGCAAGGACCGCTCCATCCGCTCCATCCTCACCGGAGGAGGAGATAAGACTAATAAGAAGAAGGAGCGTCCAGAGATTTCTCTGCCGTCAGACTTTGAGCACACCATCCACGTGGGCTTCGATGCCGTCACCGGGGAGTTCACTGGTATGCCAGAGCAGTGGGCTCGTCTGCTCCAGACGTCAAACATCACTAAGCTGGAGCAGAAGAAGAACCCTCAGGCCGTCCTGGATGTGCTCAAGTTCTACGACTCCAAAGAGACGGCCAACAGCCAGAAATACATGAGCTTCACAGatAAAAGCTCGGACAGTTACAGCTCCTCCACTGTTCCGAACTCCAAAGCTGTGTCGGAAACCCCCGCCGTAGCAACCGTATCCGAGGACGAGGATGAGGACGAGGCCACGCCGCCACCCGTGATCGCTCCCCGACCCGAACACACCAAATCCATTTATACCCGCTCAGTAATTGAGCCCCTGCCTCCCGCCCCTGCCAAAGATGCACCCCCGTCCCCCGTCTCTCCTCCACCTGCTGAGGGAAGCAGCGCCACTCCAGCAGCCTCCTCCACCACGCCACGTGCCGCCGACAAGAACCGCAAGAAAAAGATGTCAGATGAGGAGATTCTGGAGAAACTGCGGAGTATAGTGAGTGTGGGTGATCCAAAGAAGAAATACACACGCTTTGAGAAGATTGGCCAGGGGGCGTCTGGAACGGTCTACACAGCAATAGACATCGCCACAGGACAAGAGGTGGCCATCAAGCAGATGAATTTGCAGCAGCAGCCCAAGAAGGAGCTCATCATCAATGAGATCTTGGTCATGAGGGAAAACAAGAATCCCAACATCGTTAATTACCTGGACAGTTACCTGGTTGGCGACGAGTTGTGGGTGGTGATGGAGTATCTGGCTGGAGGCTCTCTGACCGATGTGGTGACGGAGACGTGCATGGACGAGGCGCAGATCGCTGCTGTGTGCCGAGAGtgtcttCAAGCCCTGGAGTTCCTGCACTCCAACCAGGTGATCCACAGGGACATCAAGAGCGACAACATCCTGCTGGGAATGGACGGCTCCGTCAAACTCActGATTTTGGCTTCTGCGCCCAGATCACCCCCGAACAGAGTAAGCGCAGCACCATGGTCGGCACTCCGTACTGGATGGCCCCGGAGGTCGTAACCCGCAAGGCTTATGGACCTAAAGTAGACATCTGGTCCCTGGGCATCATGGCTATAGAGATGGTTGAAGGAGAGCCTCCATACCTCAATGAGAATCCTCTGAGGGCGCTGTATCTCATTGCCACTAATGGAACCCCAGAGCTGCAGAACCCCGAGAAGCTGTCGTCTGTTTTCCGAGATTTCCTCAACCGCTGTTTAGAGATGGATGTGGAGAAAAGAGGTTCTGCCAAAGAGCTTCTACAGCATCAGTTCCTGAAAGTGGCCAAACCTCTCTCGAGCCTGACGCCGCTGATCCTGGCAGCCAAAGAGGCGACCAAGAACAACCGCTAGCTCAGCACGGACGAGCGCAGCGCCAtctgtcttctctcttcttctacCCTAAACCCCACTGCACACCCGTTATCCCTACCTGTCTTTTTAGTGGGCAGGAACCTGTAGAGTTTCTGATGTCAGGGacatggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgcccGCTCACACAGCTCACCAGAATGATGGCATCACTGTATATGAAGAATCCACTGGATGCTACAGTGGAGCAACGCTGTATATTTAACTAACAGAATCAGATCTGCCAGACTGCGTCTCATCGAttcactctttcttttcatctgaCTATAATTTTGGCTGTGTCTGTACGTTTGTGGTACTTTATGAATGGGATGAAGTGATTTAaatgggtcttttttttttaatcagtttttttttaaaagatgttttgtATAtccatgagtgtgtgaacagcaGAAATAGATTAGTGGCCGTTGCAATATGAAATGCTATAGGCTACTGCTCTACTGCGTCTCATCGACGAAAGTAAATGACGCTGGTACGGACCGGGAGGGGCGGCTGCTGCACGTGCAAAAGtaaacaatgaaaatgaaaaaactcAACATGAACGTTAAACACGGATGCTGTGCATGAAGAGCGCATCCTCATCCTTTTATAGTCGCTTACTTTCTCTTCTGTTATTCTGTCCCTCTGCCCTTTAAAATCAGGATGTACATTTCTTATtgacaaaattaaaacacaaactgtAGCAACACGTGTTGTCATGAACACTGAGTTAatagtgatgttttttttttaaaaaaaaattgacattaaataatgttttaagtACTTTTTTTAACGTAGCGTTGATGTACCCTTTGGCCTTAAACTGTGACGCAGAGGGAAGACGACTTTACGAAGACGGTACAGCCTGCTGTCCCTGAACCTTTTGCTTTACTCTGATGGATGGAAGAACTTCTTTCTCTTGTGTTTTTGAGCCATAAACTCTGTTTATAAGGCGTTTTGATTAAAGATTCTTATCTGAAGCAGAAGTAATAAACTGTACAAACGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122343 lncRNA upstream 131961 23175551 ~ 23259191 (+) False LOC113526573
TU122349 lncRNA upstream 203489 23187152 ~ 23187663 (+) True G103376
TU122322 lncRNA upstream 242336 23140847 ~ 23148816 (+) False relt
TU122293 lncRNA upstream 284911 23106142 ~ 23106241 (+) True G103327
TU122297 lncRNA upstream 384512 23000367 ~ 23006640 (+) True G103331
TU122607 lncRNA downstream 760 23415495 ~ 23416103 (+) True G103606
TU122692 lncRNA downstream 131382 23546117 ~ 23546390 (+) True G103688
TU122709 lncRNA downstream 157816 23572551 ~ 23575616 (+) False serp1
TU122863 lncRNA downstream 284117 23698852 ~ 23702964 (+) False G103828
TU122862 lncRNA downstream 286855 23701590 ~ 23702964 (+) True G103828
XM_026914027.2 mRNA upstream 62762 23321627 ~ 23328390 (+) True clns1a
XM_026914026.2 mRNA upstream 64541 23321627 ~ 23326611 (+) False clns1a
XM_026914024.2 mRNA upstream 74354 23299556 ~ 23316798 (+) True rsf1a
XM_026914025.2 mRNA upstream 93704 23281419 ~ 23297448 (+) True ints4
XM_026914028.2 mRNA upstream 110591 23275715 ~ 23280561 (+) True kctd14
XM_026913323.2 mRNA downstream 14421 23429156 ~ 23452560 (+) True gdpd4a
XM_026913999.2 mRNA downstream 106600 23521335 ~ 23522256 (+) True ompa
XM_026913507.2 mRNA downstream 126499 23541234 ~ 23545871 (+) True LOC113526461
XM_026913467.2 mRNA downstream 157823 23572558 ~ 23575713 (+) True serp1
XM_026913979.2 mRNA downstream 167405 23582140 ~ 23591781 (+) True pcyt1ab
XR_003402830.2 other upstream 116643 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 117694 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 118944 23272058 ~ 23272208 (+) True LOC113527010
trnak-cuu_22 other upstream 227973 23163107 ~ 23163179 (+) True trnak-cuu_22
TU122269 other upstream 410002 22952677 ~ 22981150 (+) False LOC113526422
TU122865 other downstream 200368 23615103 ~ 23629723 (+) True G103830
TU122935 other downstream 324767 23739502 ~ 23742315 (+) False cstf3
TU123976 other downstream 1880164 25294899 ~ 25306811 (+) True G104781
TU123982 other downstream 1880164 25294899 ~ 25315213 (+) False G104781
TU124829 other downstream 3416243 26830978 ~ 26833427 (+) True G105569

Expression Profile