RNA id: XM_026913362.2


Basic Information

Item Value
RNA id XM_026913362.2
length 4297
RNA type mRNA
GC content 0.46
exon number 14
gene id vaspb
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20422273 ~ 20453147 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACAGGGCGGGAGTAATGGCTTACTATAGCTGTGACTCGCTTTAACCGTTAATGACAGAGCGAGTTTGTCGAGACTCGGGCTGCAGAGTTGAGCGACTGGAGAGACTGCTACAGGAGGGACATGGAGGTGTAGAGGGAAGTCTGAGGAATATTTATACACTTCATCTGTATTCAGTACTGTTCAGGGCGCTGAAAGAGGGAGAGCTAGAGGGAGAGATAAGGGGGTGAGTGGCAGATCCTGATTGGAGTTGACAGGCTCCACTCTTCCAGCCCCTTTTTCTCCCAAACCAGGAAATTGAGTTTGTACTCCGAGGCGAGAAACCCGTTCAGCCCTTCGGAGGCAGGATAGATGAGGAAGTGCTCGTTATCGGCACTGTTTTGTTCACTTTTCTCGCTTTGGGACTCGGAGCAGCGCAGAGCAGCTGAACAATGAGTGAGCTGAGTGTATGTAACGCGAGGGCCACGGTGATGGTGTACGATGAAGCTGGGAAGCGCTGGGTGGCGGCTGGCACCGGCCCTCAGACCTTCAGTCGTGTCCAGATCTACCACAACCCCACCACCAACAGCTTCAGGGTAGTGGGGAGGAAGATGCAGCCTGACCAGCagGTGGTGATGAACTGTCCGATCGTGAAAGGGCTGAAATACAATCAGGCCACGGCCAATTTCCATCAGTGGCGAGATGCACGGCAAGTTTGGGGTCTAAACTTCGGCAGTAAAGAGGATGCCGCACTCTTCGCCAATGGCATGATGCATGCACTGGAAGTGCTCAGTGCTGATGGAgGATATTCTCCAGGTCCCCGTCTGGTGTCAAATGGACCAACccaagaggagctggagcaGCAAAGAAGATTGGAACAACAGAGACTGGAGcaacaggagagagaaagacaggaaagagaaaggcaggagagagaaagacaggagagagagcgaCAGGCTGCTTCAGtgatggctcctcctgctcctcctcttgCCCCCGGTGGCCCACCAGCTCCCCctgctccacctcctccacccgGCCCCCCTCCGTCTGGTGGAGGCggacccccaccaccaccaggACCACCACCTTCTGGTGGAGGTgcacctccacctccagcaccaccCCTTCCCTCTGCCTCAGGTgggggaggtggaggaggaggaggaggaggacttGCCGCTGCTCTTGCAGGAGCAAAACTACGCAAAGTCGCCAAGGATGAAGGTGGTACTGCAGCTCcttctgctcctgctcctgctcctgctcctgctaaACCTGACTTGAGCCGCAGTAGTGGGTCTGGGCCgagtggaggaggtggagacCTGATGGGAGAGATGAGTGCTATACTTGCACGACGgagGAAAGCAGCGGATAAAGGCGAGAAAGCTCCTCCGGCCCCAAAGACAGAAGAGCCCAGtaacGATGATTCTGAGTCTCAAGGCCAAAGCGACACGTTAAGGAGGCCGTGGGAGAAGTCTGCAACCATCCCCAGGAATAACTCTGTTACCCGAGGTCTGGATTCACCCGCCTTCACTGCTCTGACACCCAGGCTGAAAGCACCTGGCTCATCAAATGACGCTGAGAGTGGAGATGAGTCTGAACTAGAGAGAGTCAAACAGgaaCTGCTGGAGGAAGTGAGGAAAGAGCTGCAGAAAGTCAAGGATGAAATCATTGGAGCAATCATTCAGGAGTTACAGAGGAGAAGCAcatagtctctctctttcatgcacacacacacacacacacacacacacacacacacacacacacacaaatgcaaatatatgcaGGGACTTAATCCATTCAGCTTgattttgattttcattttaaatcattcagcctttattttattttccccatcatcatcatccccaTCATCATCAATATTGTTCACTCAGAAAAGTTTACACCTCTTTTGGGTGTTAATGAGATGTGTATGAAATTAACACCAGTTACTGTAAAAGCTcaatgagcacacacacacacacacacacacatactctctctctctctctctctctctctctctctctctcactcagcaACCACACCAGACTTGCACTTGTCtacagacaggaagtgaatgCATGGCTCTTCATTGCTCTAACCGGTCTGTGTTGCGCTACATATTAAGAGTACAGCCAAATGCAAGACTGTGTGCTGCTCCTAAAGAGCACAGCTAAAGATTATGTCTTGTAAATAGTAGTAGGCGTCTGTGCCATAGTTCACTAGTGAACCGTATTATGGAACTAGCAAGCAAGCAGGCGAGTTAGCTTCAGTGGAGGTATTTTTTCAATTCAGGGCTCTGTCTCAAATCGCGCACTATGCACTATATTATTACACTATGTAGTACCTGGACTTTTATCAGGCAGTAACACAAATCAAACACTAGTGCTTTTCACTAAACATAAATGACACTGCATCATGTGGCACCTCACATTATTAAGCTGTGCCAGAACACCTTCTGCCAGAACAAGTGCACATTTTAAATCCACCTCAACTCTTTTCTCCTCATTTGTATCTGTGGTGTAATGGCATTCTTGTTGGCCATTATGAAAATTTCAAACCATAAAGGCTTCTGCTGGCTCTATCCCTTCTGCTGCTTAGAGCAGACTGCAACCACCAAGCATTAAAAAGTATCTGGTGTGCAGCACTTCATTTCTGCTCAGTCCTAGCACACCATCCAGGTATTAATAGTACACTACATCTCACTGATTTTCCAAGTGTGCACTATGGAAGTACGCATGCTGAGATTTGAGAAACAACATAGATTTGCATACTTCCtagaaacactgattttgtttttaacattagCTGCCTGCtgggatagatagatattatATGTTAGTTAGCCATGTAGCCAGCCTTGCAGGCCAGGCATTTTACATCAGTGTTTGAAGCAGATACTCAAATGAACAGATTCCTGTAAGGAACTCATGATCTGACATAGAGATGGATTCTCTGATGATCCTGACAGGTTCCTGGTGTTTCTAGCTGGacttatttgtataaaattgaGAACTTTTGCGTCTGTACAGCCACGTAGTCTCTCAGGATGGTGATGTGATTTAgtctacatttacatattttctttCAGCAAACACTTCTATCCAGAGCAGCTTAGAGTGATGTGGTGTACACTATGAGATTGACAGCGATACGTGTGCTCCAGACAAGACAGGGACACTGGTGTAGAGAACAGAAGCAGTACTGTAAACACAATAGCTGGAGTACACAGGGTGTTACATACGTTTGTCACACAGCAGTCAAGCTAGACAGTCATCAAACCTGATAATACACACCAACAATAATAGAGTATTGTAAGTCACTACCAGGTACACTGTTACACTAATGAGCTGATggatagacacacagacacacacactcacactcagggGGATTTAATTATTgcattacataaaataaacactccTGAACACAATCACACAGTCACTATGCAACGCTTCATTCAAACATCACTGCAACACATTCCAATTTAAccacatttaaataatcaattggagttgattccaagtgttaaAGGAGTTGATTCCACACAATCTTTTAGGCTGCGTGTCCTTGACAATGAACTCAGtgagctttttttgtttaatgccTGAATAAACTTATGCTAATATTACCTATACTTAAACGTGTACCTGACTCTTCTCAGCTTCTGTGGTTGGCCAGGTTCAAGGCATTAGCATTGGCATCATTTTATCACAAATTTGCCATTTTTCCCTCCCTGTTTTCTCTACAGTGAAATACTGCCAGACTGCTCATGTATTTGCCAAGAACAGAGGCAATTGTCCAATGTTAACAGTTGAATAGCACATGTTCTTGCACTATGTCCTGTCTGAATTTGAGCTGAATCTTTTTAATGTGTGGAATTGACTCTAAATCACTTTTGAGTCCCAATGCCTAGAATCAGGTAATCAGCTCTTTTTGGGATCAACTTCCAGCTCTGGGAATGGatataaataatcaacttgatAGAAATAACGGTATTTCTGTTTAGACCAAATTGCCTTTGatacaaatgtgtgtgcaaCCAGATATGCAGTGTGAGTGTACagatctatacacacacatacacactgatctTTTGGTGGGCAGGGTTTGTGATTATTGACTTTCTTGTTATTGGGTTTTTGTTTATAATGCTTTACTatatttgaaactttttttacactgaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacactggagcatTGCTTTTATACCCAAATACAGCTGCTGCTGCATCAACATGCCTCtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121262 lncRNA downstream 7745 20395869 ~ 20414528 (-) False akt2
TU121267 lncRNA downstream 62732 20358215 ~ 20359541 (-) True G102434
TU121048 lncRNA downstream 65676 20282185 ~ 20356597 (-) True G102272
TU121045 lncRNA downstream 131282 20244335 ~ 20290991 (-) True G102270
TU121046 lncRNA downstream 159133 20257332 ~ 20263140 (-) True G102271
TU121277 lncRNA upstream 18724 20471871 ~ 20472745 (-) True G102444
TU121282 lncRNA upstream 25186 20478333 ~ 20478556 (-) True G102449
TU121286 lncRNA upstream 41110 20494257 ~ 20496301 (-) True G102453
TU121318 lncRNA upstream 125543 20578690 ~ 20581168 (-) True G102472
TU121291 lncRNA upstream 185724 20638871 ~ 20686185 (-) True G102458
XM_026913651.2 mRNA downstream 5699 20395866 ~ 20416574 (-) True akt2
XM_026913555.2 mRNA downstream 32640 20382810 ~ 20389633 (-) True ccnp
XM_026913303.2 mRNA downstream 44941 20362330 ~ 20377332 (-) True si:ch211-132b12.7
XM_026913745.2 mRNA downstream 129950 20215142 ~ 20292323 (-) True nectin1b
XM_026913612.2 mRNA downstream 367837 20051332 ~ 20054436 (-) True LOC113526513
XM_026913365.2 mRNA upstream 7196 20460343 ~ 20464685 (-) True snrpd2
XM_034304978.1 mRNA upstream 17213 20470360 ~ 20471089 (-) True foxg1c
XM_026913364.2 mRNA upstream 20032 20473179 ~ 20476270 (-) True pglyrp5
XM_026914140.2 mRNA upstream 27679 20480826 ~ 20484801 (-) True polr2i
XM_026913853.2 mRNA upstream 36393 20489540 ~ 20536022 (-) True rasa2
XR_003402829.1 other downstream 442014 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 1071330 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 2225467 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 2335302 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 5067636 15347166 ~ 15354637 (-) True tmem170a
TU121422 other upstream 500455 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 542194 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 1781556 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 3137798 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 4170369 24623516 ~ 24711368 (-) True G104473

Expression Profile