RNA id: XM_026913403.2


Basic Information

Item Value
RNA id XM_026913403.2
length 4209
RNA type mRNA
GC content 0.41
exon number 6
gene id si:ch211-14c7.2
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20971589 ~ 20985096 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATAGACAGACGCTATAGAGACTGAGTGGCTCTTACTACAGAGACCTGATGGTGGTGTGACAGTGTCGCCTGATCAGGACGCGATTATACACGCTTATACTCTTGGATATGTGCCTTTTAAAATGTGATCGATTAAATACTGGGACGTGTCGAATAATCAGATGTAGATTAGATTAGACAGAGTCGACGTGCCTCCTTCGCGCGCGGCCATCTGAATCATCACAGGGATTCGTGACACGGATTCTGCTGgacgaataaaaaaaatggccagAGCATCAAGCACTTAACCAACCTCTCAGAACAATAAAAACCAGAATGCTACagcacaacaacaataataactaCCCTTGCCTGGACGTGGCCCATAGAGAGCTGCTCCATGGTTGCAGGCGAAATGGTACTACGTTCAGTAGTGCCCTTGGATTCGGCGCAATCCCGCTAATTAAAGGTCTTAGGGCTTGGGCAGTAAGTGGAGGATATTCGAGAAGTAAGAGAAAAGCTGCAGCTGCTTGTCAAGCATCTGACACAGCTCATGAGAGCAGAATTGGAACCAGCCATAGGAAGACACATTCATGTCATACACCTGGGGTCAGGCAAGGAGGACTTGGTGCTCTAGTGACTGTGGCCACATTGAAGGACTCAGATGGAGGCAGGCAAACCCAGACTCGATGCCTCTTTCTCAAAGCTGAAGGATGTAATTACCTCTGTGCTGTGGGGACCAGAGTGGATGGAAGAAAATCTGGAAAAGGGAGTCAGGATGGTGTGGGAATTTGTGATGGAAAACCTGTCAGAAAGTGGAGAAAGTCTAGCAAGAGACCTAAATCCATGGAGAACATCTCAGTAGCTGAGAATAAAAAGGGAGTTGCCTCTACAAAACTGGAACTTTTGGACAAATGTTCCATAACACAGTGCCTAAAGGCAAAAAGTGCCCTGACAGCGATTAACAATGAAGAAGATCATCTAAATAGGTCACAATTTTCCGCTCTACATGAGATGTGTGAACCAGCCACATGCAGCCCTTCTACCAAATATGATTCTAGTACAGAAGTGAAGGAAGACACAACACTAGCCTCTTGCCCCGAACTAAATGATTGTGAGGTTTTTGTTAGACAAGACACACCTATTTCTACAAGTGACTACACAGATAAGACCACACAAATCAGTAAACACGAGAATGATCTTACAGCTGATGTGAATCTGAATCATGTTTTAAAATCCAAGGAAATTGGTATGCCAAACTCTGAAGAGCATAGTCCAGAATTTGGAGTGGATATACATAACAAAAATGGAATCTTATCCACCAATAGCCATAGCCACTATAACACCACAGACACCATTAAATATGAGATTGACATTTTAGCAGATAGACATCTGAGTAAATCCAATGAATTTGGTGTGGAGAAATCTAAACAGCATGGTCTAGAGTCTGAAGTACTTTCAGAGGACACCAGTAAGACAAATGGAACTTTGTTAACCATTAGTCATAGCCACTGTGAGGAGACTATCATACCCCCTGCATCCAGCAACCATTCAGATGATActttattaacaattatacaAGTGGAACAGGAGATAAAGAAGAAAATAGATGACAGTTCCTTTAACCATGACATGGAGGAGATTGTCCATTTTGGTGAAATGAAGAAAGACACGGCTAGTGCCTCTAATCAGGACATCAATCATGTGAGTGAACCAGCAGAGGAGCATTGGGGGTCACCTGCATGTTCTTCTCATCATAAGCAGCAAATAATCATGGAAGTAAATGTGACATTTGaggatggaaaaaaattaaacaccacAAATGAGGCTTTTGAAGAGCTTGCTAATTCTTTATCACAAGGTTCTGGCTCTTTCAATGTTGCTAATGCTATTACATCCCTGCCTAATCCGGCCCCCACCACAAACAGAACTGCCCTCAGATCCATAAGTAGGCAGCAACAGGAGGAGACCAAGGGTAGGAGATTAGTACTAAAACCAGCATTGGAGCTGCTAGAAAAGCAGGAGAGAGGCCAGGAAGCGGACAAAGTGGCGGACGAAGGGCCTGAAGTGGTGGATGAGGAAGATGGAGATGAGTTTGGAGTCTTTATGAAGGCAGGAGATGAGCAGGTCTGGAATGAAGGATTCCACGAGCTCAAAAAAGTGCCTTGTGAGAAGTTTGCTGGCATTGacactggaaactcctctGTTTCAAATGAACCCCCATCCTGGATGTCTGATTGGACCAGAGACCTGTCAATCAAGCAATCAGAGGACACATGGACTGCCTTCAAGCAGGAAGTGGTCAGCAGAGGAACAGAGAAGGAGTCCTGGTTTTCGACTGCTGTGGAAAACAtgcacctcacacactcatctctcaTTACTGTGcCAAATGTGTTTTTAGAAGCCTTTCCCTATCTAAAATCCTCCTGTGGAGATTCTGACTGCATTCCCACATTGGCAGAGCTGCTGCGAGGTTCTGCAGCAGAAAACAGACCTGAAAAAAATGGGAGGCAGAGTCTACTAGATGGCCTTCAGGATCTGGACCGCATGATTGGTGTGAAATACAAGGTGGCAGAGTCTCTGTCCCGAAAGCTTCTCCTGCAGTCATTGGAGTTGAGGACCCTGAAACCTGAGCGTGCAGGTGGCCATAAACACAACATGGCAAGGTTTTCACCAAACCTTCCAATGTCCAACCAGCAGTTAGCGGCTAACGCTAAAAGAAGACTCTCTTATGACATCAACAGAAACATCATGTCATAGTTTCCAATTTTAAATCACTCTATTCttcaacagctggagaaagaatAACTTCAGATGAAAACAAGCAGAATTGTTCCCTTCCCTCTGCAGTCACATGGGAGATTAGTTGTTGTATATTTATGTCTGTTAGTATTTTAGTATGTCCATTTCCCCAACAAcctatttaaaaatgaaaagttatCACATGCATCCTGATGTTGCTAAAAGACAGACATTCCTGGGTCAACAAGGATCAGCTTGATCATATGACATCACCACATTTACCTAACACTAACTAACTATATAATGAACTTTGCTACTGGTTTTGATTACACAATAAAAGCATTTAcctaatgttagcttgctagtaCTTAACATCAGATATCTAATGCTGGAGAGGGAACATTGATATTAGTTAAGCCATCTAGTTAGCTGGTTAACTTATCGAATGTTACCAGactattatattatttctttcatttattcatcatctATATCCTGTGTTGTGGTGGATTTGGAGcctatcctgagaacactgggcGCTAGGTAggagtccatcacaggacacatagcacacacattcaaacattcACTCACACCTATGGGTAATTTACCGtatccaatccacctaccagcatgtttttgggaggtcggaggaaaccggagaagaaaaggaaaatcatGCGGACAGAGGGAGAacacaggaagaacagaaactcctcacacaaacacactattgttacacaaacagtaacaaatGCTGTATTATGTACTTACATTATGCCTGGACAATTAAAAGCACAGGCTAGGGATAATTTCACATGATTTAATGATTTCACATGATGCAATAACCTAGTGACATTCAAATTTCTCCCTTATTGACCCAGGGATCAGTTGCTCATTTTACAGATACTTTTATCTGAAGTAATTTACAAGCATAGGTatagaagaagaacaagaggaacaataacaacaacaagaaaaataattaaaggtcTTTTTAAGGGCTTAATAGCAGCACGCTGAACTTAGATTTCAAGTCACCAATAAGGTAACTTATTGTCCCCTGTGTGGACAATAAGAACATTTGgacattaaaattatatttactaGTCCTGTGCCAAAACTCGATCCATACTGTtacactttacattttcttctttgTAATGGAAGTTCCAATAATGCACTTATTGTTCTGGTTCTTGTCTATCTAATTACACTTGTTTCAGAATAAATATTTGTTGTCCAATCTATCATCCTATCTCACTGTTAAGtgaaatgaatgatgaatattTGGGATTTTTTCAGACCATTAAAATcaaactgcttttattttatttttcatttgaatcaGAAAACTGCAGTGTGCCATTTTTACCAAATGTGAAATTCTGAAGAATAAAGACTGTATTTTCTCAGTTTGAAGATCATGTACTCCTGTCAACATGTcgattgataataataataataaaatggaatCAGTGGATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121214 lncRNA upstream 20598 20939413 ~ 20950991 (+) False prx
TU121238 lncRNA upstream 37495 20930187 ~ 20934094 (+) True G102415
TU121203 lncRNA upstream 122251 20847774 ~ 20849338 (+) False irf2bp1
TU121205 lncRNA upstream 122251 20847774 ~ 20849338 (+) False irf2bp1
TU121172 lncRNA upstream 285401 20638760 ~ 20686188 (+) False pid1
TU121459 lncRNA downstream 19240 21004336 ~ 21004721 (+) True G102585
TU121596 lncRNA downstream 163988 21149084 ~ 21194404 (+) True G102703
TU121821 lncRNA downstream 519648 21504744 ~ 21505622 (+) True G102903
TU122075 lncRNA downstream 1064078 22049174 ~ 22049382 (+) True G103130
TU122086 lncRNA downstream 1143273 22128369 ~ 22170834 (+) True G103140
XM_034304979.1 mRNA upstream 4318 20939416 ~ 20967271 (+) True prx
XM_026914467.2 mRNA upstream 47300 20906063 ~ 20924289 (+) True pld3
XM_026913314.2 mRNA upstream 107395 20860782 ~ 20864194 (+) True foxa3
XM_026914092.2 mRNA upstream 123209 20844674 ~ 20848380 (+) True irf2bp1
XM_026913988.2 mRNA upstream 152261 20773604 ~ 20819328 (+) True sphkap
XM_026914458.2 mRNA downstream 5888 20990984 ~ 21003744 (+) True kcnk6
XM_026914166.2 mRNA downstream 40932 21026028 ~ 21102216 (+) True LOC113526807
XM_026914167.2 mRNA downstream 40932 21026028 ~ 21102216 (+) False LOC113526807
XM_034305209.1 mRNA downstream 58420 21043516 ~ 21102216 (+) False LOC113526807
XM_026914169.2 mRNA downstream 87236 21072332 ~ 21102216 (+) False LOC113526807
TU120293 other upstream 1847712 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 1850463 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 2177316 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 2231591 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 2372214 18598714 ~ 18599375 (+) True G101419
XR_003402807.2 other downstream 40931 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 802020 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 1967581 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 2178011 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 2286962 23272058 ~ 23272208 (+) True LOC113527010

Expression Profile