RNA id: XM_034304962.1


Basic Information

Item Value
RNA id XM_034304962.1
length 6221
RNA type mRNA
GC content 0.43
exon number 15
gene id iqsec3b
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27558440 ~ 27600569 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAGATATATATCTCAGAAGCACGGCAGATGAAGGGCCTGTGTTGGAAATGTCCTGCGTCGTTTGTTCAACTAAACTAGGCCGATGAGTgttggaaaaaagaccagAAGCCAGACTGTCCTGCACCAGTTTTGCTGCCCCGCCCCTGAAGCTCCTGAAAGCGATCCCGTTTGCTGTTCAAGGAGTTCAGTCCATCCAGTTGAAGGACAGGCTGAGAAAGACAAGAAGGATGCTGCTCAGTTGAACCCTACGTCATGTACACATACTCCGGACTACGAGCTCTCTCCTGATCTCAAACAAAAACAGATTGAGGATTTGGAGCAGAAGTACGGTGGTGCGCTGATCTCCCGCCGCGCTGCCTGTAAGATCCAGACGGCGTTCCGTCAGTACCAGCTCAGCAAGAACTTCCAGAAGATCCGTAACTCGGTTCTGGAGAGCGGCATTCCACGACGCATGTCTGTGCGCAGGGTGCGGGTGCAGAGAGACGGTTTCTCTGCTGAGCGTGCGCTGATGGAGGGATGTTCTCTCATGGGCATCCCACTCACACATTCCAGCTCGCTGCCCACAGGTGCAgctaacacactcacaaaccTGGAGGACACCTTCAGCGAACAGGTGCAGTCCTTAGCCCGCTCCATAGACGAGGCCTTGAGCAACTGGACTTCTGTGCGTGATGGGGAGGTGGTGGGAACTTCAGTGACCACTCCCCCTGGGCCAGTCACAGAGGGGCTGCTGATGGACCCTACCACCCTTCAGGAGGCCACGCATAACGCCTGCGCCGAAAACATTCCCCGCAGTGCCAGCAAGCTCATGATGGCCTTCAGAGATGTGACAGTGCAAATCGACAACCACAACTTTCGCCTGTCCTCCTCTGTGCTCGAGTCCGTTTCCCTAGGCAACGGTATCTCCAAGGAAACTGCCACAGAGCCTCAAGCAGGGGTGCAGAGCGGGGGTCAATCAGAATCGTCCACCACAGCTGAGTCTGAGTTCCCAGCCCCGCCCCCTAGTGAGGAGATAGCGCTGGATCAGCAGCCGACTGGTGATGAAGCAGAATCTGCACAGTCGGCCTGGGAGAAGCCGCTGACTAATCAGAGTGCGTCAGAGAACAGCTCTGAGCCAATCAGCAGCAGTAGCACATCCACCTCGGCATGTGAGAACATGATCATGACCTTACCGCGCACACACTGTCCAGACACGCACTGTGGGACGCTTTCCACAGACGTTGCACGCAAGCGTCTGTACCGCATCGGTCTCAACCTGTTTAACATAAACCCAGACAAAGGCATCCAGTTCCTGATCTCGCGAGGTTTCATCCCTGACACGGCCATAGGCGTGGCTCACTTCCTGCTGCAGAGGAAGGGCTTAAGCCGGCAGATGATTGGAGAGTTTCTGGGCAACAGCAAGAGACAGTTCAACAGAGATGTTCTTGACTGTGTGGTGGATGAGATGGATTTCTCCTTGCTGGAGCTGGACGAGGCTCTCCGGAAGTTTCAGGCTCATGTGCGTGTACAGGGAGAGGCTCAGAAAGTGGAGAGGCTTATCGAGGCGTTCagTCAGAGGTACTGTATGTGTAACCCTGATGTGGTGCAGCAGTTCCACAACCCTGACACCATCTTCATCCTGGCCTTCGCCATCGTCCTGCTCAACACTGACATGTACAGCCCTAACATCAAACCCGAGCGTAAGATGCGCCTCGAGGACTTTATACGCAACCTCCGAGGGGTGGATGATGGAGCGGATATTCCGCGGGAAATGGTGGCTGGCATTTATGAGCGCATCCAGCAGCGCGAGCTTCGCTCCAACGAGGACCATGTGACCTACGTCACCAGGGTGGAGCAGAACATTCAGGGAATGAAGACTatCCTGTCTGTGCCTCATCGGAGGCTGGTGTGCTGCAGTCGTCTCTATGAAGTCAGTGATGTGAACAAGCCACAAAAACAAGCAGCCCATCAGAGAGAGGTGTTCCTTTTTAATGACCTCATTGTGATACTGAAGCTGTGTCCCAAGAAGAAGAGTGCAGCAACCTACGTGTTCTGTAAGGCCATGGGTCTGCTGGGGATGCAGTTCCACATGTTCGAAAATGAGTATTACCCTCATGGTATTACCATCTTGTCTCCGTTCTCATCGGAGAAGAAGCAAGTGGTGAGTTTCTGCTCACAGAATTCTGAGGAGCTGCTGAAGTTTGTGGAGGATTTGCGGGAGAGCATCGCCGAGGTGGCTGAAATGGAACAGATCCGTATCGAATGGGAATTAGAGAGGCAGCAGGCAGCGAGAACAACTGCTCAGAACAACGGCAGCCAGCTGGAGATGCATTCAAGACCAATATCTcccacagGAGACCATGATTTTTATGACAAGCCTGGAAGCAATGCAGTTGAGGTGTCAATTCACAACAGGCTCCGAACGTACCAGGTCAGCACTCCACCGGCTCCGCCCACTTCTCAGCCTCAGCTGGCCATCATGCCTAGCCCGGCTCCCAGCTCCACCCCCAGCTCCGCCCTCAACATCTCCCCTGACACACTCATCCAGTGCCAGCAGATCGTCAAGGTGATCGTTGTGGACTCAGCAGGCCGTGGGCATGTAGAGGCGTTCCTGAGCCAAAACCCCGGACAACGTTTAATCCAGTCGGCTGTCTCCACTCCGACCCGCTCGAGGGAGGGCGGAGCAAAGCAGCCGCCCCTGCCACCTCCACCGCCTCCTTATCACCACAAACATCAGTTCTGCCCTCCAACTCCGCCCCCTCCGCAACACCTGCTCAGTCAGCGTAGGTATTCAAGTGGGACACGCAGTCTagtctgagcacacacacacacaaacacactcttatATTCAAGTGTATCAGTTCCCATTGTACCTTTTCTATTCAAAACCATGTGACTGCAGACGGTAATATATTCTTTTCTctctgacaaaacacacacaaatacacacccacacacaccttttatACTCTAACACCTGCTCAGTCCTGTATAAATAATTACGCCACAATCGGGGCCTCGTGTCCTCTAAATGAGTATTTTAGATACAGAGTAGTTAGTTTTGTCAGATGTTCTTTTCCCTGTACTTTTATCTCTTTAAGGGTTTATAGAGCAATTTCCACAGAGCTGCAACGTTAGCATCAGATTTTCTTACAACCTTTAACATACAGCGTGATGACATTAGCCGTGTTGGTGTTAGTCACAGGGTTCAGAACTGTAAAACCTGGCTTAGATTAGAGTTCCACAAAGGTGAACATGTGCTCTTGATCTATAGTGTGTTATTAAACAGGGTGTCCACAGGttcttaaattacattttacaaatgaacAGCACTAAGTAATACATTGTCCATATGGTTAGATATACATTTTACTCCATTTTGGACTTCCGTacaccctgaaacacatcatttttaaaactacaCCGAATAAAGGATAAAACCTAAAATACATACTGAATTAAATatcattgtttttgttaatatcAGTTTTGGTATCACTTTTTTTACAATGGAACAGAGCTACGCGCAAACACATCTTCCTGCTCAGTGCCATTACTATTACTCTGCGCTgctgaattaataaaatgtataaaataaggCCAATGTTTTTGTCAATTCAGTgcactctcctgtaaagaaaatgtgttcacagtttgaaggataagctaaCCGAGCACTCATCTTTTACACTTACAtgctaatttaaattaataactaTATCCATAAAAATTCTCAGCAGAGTTTCAGATTAAGGCGATGTCTCCTCTGATGTCCTCTGTGTagggaaaaatgttttgttgatgacactattacttaattaatagtgtcatatttgtgtatttaatattcgCCTTAAATTGCATTCCATAGTTAAGTATATTAACaaccaaaaacacaattttCGTATTTCCAAAAATCAAAAGGTCATAAATTTCAGTTACAGCAAACTGTCAGACACTGGACTTAAGAAAAATGTACTTAAATCCGCTCATAACCCagacatgcctctgtttttGTGTACGTCTatagttacatctgaggtctgaattaAAATTGAATCCCATTACATTTGAAGTGgcagtgaaaaaaatgttttaaataactTGAGGATACCTGTAGACACCCTGATTAAGGCACATTTATATGGACTTATGCATAGGTCTAAGtacagtgctgcagtgtttcATTACAGAGCTTCAGTTTAATTCATGAGACATTGaatgtaaggagatgtttctcCACATTCTAGCAGGAACGAAGTGCCCAGGCTACGTTACAGCAGTTAATGCTAACAGCTGTAACGAAACATTCCATGGGTCATCCCAGCATCTGTGTATAATATACATTCTCACCTTTTATGGCCCCAACAACTGCTAGGCCCTGGATGGTATCCTTATCTTTCTAGTGGCAGTTTCTGTAGGGTGCCTATGTAGTGTTTTACTGTGACTGGGTGTGACATTGCTACTCAGTATAAACCAGGCTGTTTTTTGGTCTCATTTTGCTTTGCCTTTGGGCTTCTGAGATGATATACGTGTTTCTAACccctatgattttttttttaagaaattgtTTGAAATTTTGAACAAAAAGACTTCCTATGAATCCTGTGTACAAATAAATAGCATGGAATAGAAACATTGTACATTAAGAGTATAAGCTTTTATGAAGACATGTCAAATAACATTCATAACAACATTGTAATCACATATTTATACTAACTGGCATAAGCCATTATAAGTACTTATAGTAAATATTTAGTAATTAACAGTTAGCTCTTTCAGATTTCAGTAGTTAATAAGGTAAAATTTACAAGTAATACTTGATGCCTACTTTGCAAGTTGAATATTTAAGTACAAAATAACTAACATGAAAAATACCAGGCAACTGATTCAGCAAATTCCTGTACATCTGACTGTAGGTAAATGTACAGGTAACAAATGTGTAGTAACATTTTAACATCTGAAAGTAAATACTGATAACTCTTTACATCAAAGTTTGCTTATTTAATGCATTAGTTAAGATGATCAAACCataaacttcagcattaatacatcAGAATCATTCAAATAGtaattaacttatttattaaataatgaacacaGAGCAGAacgttattatttttctataacagcaaatcctgaatgttttattcttctaacagcacagcaatttactaacaattacaatttttattaatgaatggcacatcatacttttatccttttataattacatttaaagttgtggaacgtttaagggaaccttaatgtaaagcattgCCTTTGTTTCCAAATATGGATCTGAGTATAAAGTATTACGGCTTTACACATGATgctttttttccattaattatTTCACACATTCTTACATTTTTAACTATTAAACTGTTCTGCTGTACAAATCTAATAGTTCTCACATCAGTTACTATGTACTTTAACACCAGAGTTTACTATTAATTAATGTACTTTTACGTGTTAAACATGAGAAAGTTTCTGTACTATAGGTTAAAGTGCTGCTGTAAGGCCTTAAAAACCTTCattcatttgtaaaaatttCTTTTGAGATCAGTGTAAGCAATGTAGTGTCTTCAAATCCACGATTTGATCATAACCTGTCcatacagggttttttttttcataaggcAATGTGGATGTAACTATAAGTACTTATGATGACCACTGGCTCATGCCTTCCATTAGACAGCATTATTCCTGACATATAAGACATCATAACTGCATTCTTTTTTGCATCCAGGATTCATAGGACGCGCCAATACCTTTCATTGAACACTGAAAATAGCGTTGTGTTTGAAACTTCCTTGTGGCTCATGTTTGCACCTCTTTAACATTATTGTTTGCTGTACTGCATGTCATATAAAAGTTGACTATGAACATGAATATGCATAGATCTATAACAGGCACATGATTCAACCTACAGAAGTATATTTTAGATGCTTTAAactaagtgtttttattttgtttagttgGGGTTTGGGAGTGATTCATTAATGAGGATTAAGTATGTATTACGTAGAATTATTCATTGCTAGTTGcatattttgtctatttgtaCAGAGGGAGATGAGCAATGATGTCATCCTGTGTGTCGGCACAGAAATGACAAAGAAACAGCAAACAAagtgagattttatttattgctatgGATTTGTGGAAGGAACAGTTTCTGTGAAGTTTGCACAGCTGAGTTTTCTGGAATGGGAATAAAATTTATCAGATATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125360 lncRNA upstream 12923 27543059 ~ 27545517 (+) False ddx11
TU125340 lncRNA upstream 59810 27498431 ~ 27498630 (+) True G105981
TU125251 lncRNA upstream 324216 27229784 ~ 27234224 (+) True G105904
TU125136 lncRNA upstream 413409 27141845 ~ 27145031 (+) True G105855
TU125117 lncRNA upstream 428811 27129348 ~ 27129629 (+) True G105841
TU125432 lncRNA downstream 1589 27602158 ~ 27602734 (+) True G106064
TU125500 lncRNA downstream 125833 27726402 ~ 27729161 (+) True G106118
TU125760 lncRNA downstream 497160 28097729 ~ 28098001 (+) True G106343
XR_004578326.1 lncRNA downstream 633238 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA downstream 633238 28233807 ~ 28244868 (+) False LOC117597547
XM_026914193.2 mRNA upstream 12914 27526123 ~ 27545526 (+) True ddx11
XM_026914194.2 mRNA upstream 12914 27526123 ~ 27545526 (+) False ddx11
XM_026913265.2 mRNA upstream 430027 27120185 ~ 27128413 (+) True LOC113526324
XM_026914232.2 mRNA upstream 450869 27105466 ~ 27107571 (+) True LOC113526836
XM_034304948.1 mRNA upstream 495379 26913328 ~ 27063061 (+) False si:dkey-205h23.2
XM_026914063.2 mRNA downstream 109607 27710176 ~ 27713570 (+) True gcsha
XM_026914112.2 mRNA downstream 246249 27846818 ~ 27854765 (+) True nob1
XM_026913763.2 mRNA downstream 259459 27860028 ~ 27863418 (+) True nip7
XM_026914289.2 mRNA downstream 289192 27889761 ~ 27891260 (+) True LOC113526868
XM_026914104.2 mRNA downstream 302202 27902771 ~ 27915940 (+) False pdpr
TU125244 other upstream 343870 27211389 ~ 27214570 (+) True G105898
TU124829 other upstream 725013 26830978 ~ 26833427 (+) True G105569
TU123982 other upstream 2243227 25294899 ~ 25315213 (+) False G104781
TU123976 other upstream 2251629 25294899 ~ 25306811 (+) True G104781
TU122935 other upstream 3816125 23739502 ~ 23742315 (+) False cstf3
XR_003402810.2 other downstream 344221 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other downstream 358956 27959525 ~ 27961771 (+) False LOC113526832
TU125683 other downstream 466343 28066912 ~ 28070685 (+) True uraha
XR_004578358.1 other downstream 545694 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other downstream 545694 28146263 ~ 28161869 (+) False def8

Expression Profile