RNA id: XM_034305019.1


Basic Information

Item Value
RNA id XM_034305019.1
length 3724
RNA type mRNA
GC content 0.48
exon number 13
gene id cep126
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24368079 ~ 24384446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTGTGGTTGTCAACCATGCAGAAACTATTAGTTGTGCGCGTTTATAAGTATTTTTAAGCGATGATTTAAAGCGTTTGGCTAAATAATAATCCGTATTTAATATGTCCGAATTGGGAGAAGGTCTTATTCTTGCGAAATAGGTAGattcattcttaaaaaaaaggaaactgggGTATTTAGAAAGTCAGAGTGCTGACATTACGTTGTCTAGGCAGCTAGGTAACGTTAGCACCTCAAGCCTGCTGGCTTTAAACAGTGGCACTTTAACAGAATgatccttcatcatcatcatcatcagcatcatcatcatcagcatcatcatcatgccGCTTTTTCCTGGCATGCTGAAGCCAGAAATCTGAAGAAGCTCTGAAAAAGCTCTTCTtcaggatgcaagtgcagaagGACACTCTTTCTTATTCAAATGTTAGAGCAGGTCTGGATGGAGAGGCTGATGATGACAGGCAGCTTCTGGTCCAGGAACAAAAGGCTTGTCGAGCTCGAGCCCGTCAGTACTCCCTGGAAACAAACCAGCGTAGAAAGGCGCTGGAGGACAGGAGGAGGCGGCGGGACATTCAGGAGCAGAGGCTGAGGGAGAACATCCTCCAGCAGCGTAAGCAGAGACTGCAGGAAGCTACAGAGCGTTTTCAGAGAGCTCACCTCCCTCCGTCTCAGAGGAGAAGACCAGCCTCTAGTACAAGAGCACCTAACTTGGAGGAAGCACTCAGTCATATTCAGGGGGCCCAAACCTCCTACACTCATCACTCTTCATTCTTATCTGGCACCTCCTCCATCAGCAGGAGCTGCACTCCCTCCCCTAAAGCCCCAGGGGGCTCCAGCGGTCCTCGCAGCCTGCATGCAGTTTCTGCAGCTCAGGCTTATGCCAAGCTCATGCAGGAAAGAAGCCTGGGTGACTTTAAAACCAGCCAGCTCCTCTTCATCAACCAGCTGCAGGAGTATCTACCAAAGGATCAAGAACAACTTCAGATACAGGAGCACAGTGACACTCAAATTAGCCATGCAGAAAGCCTGTCTAGCCTGGACAGCCTGGAGAATGAGGTTCCTCAGCATGGTCATAGCAGTAAACCTGACAGTCTGGATCACCCAGAAGTCCACGATACCAGAAAGCCAACATCACTGCAGAGGCAGCTAAACTGCCCAAGTTCATCATCTAACCACTGTCCACCGAAGAGTTTCCTGGAGAAGGTAATAAGTCAGGAGGGTCTGTCTAGTTCTTCCAATTCCTCATCACCTTCAACTGTGGAAGATGAGTCAGCAGATGAGGTACAGAGTGTCCATAATTTCTTAAAAGCAGCAGAGCAGTGCAATATAACAGGCCAGTCCCAGATGTCCAACATACAATCTACTCTCCCCTGCCAAAAGCAGGTGCTTGCAACTAATTCAGGACATACAGAGAACCAGTATGGCACAACTACTCAGGAGACCATATCGAGGGATAAAAGCACAGTAGCAGCCCACTGCAAAATGCAGACAGCCCCAGATACCATACCTCTGGTATATTCGAGCATGGCTCAACAGTCCAATTCTGAATCTGGTAAGCTCTCGAAATGCGCTAAGCGTCTGTCAGAGATCCAAGCTGCCGAGAAAACCAGCAGATGTATATATAGCAGTGCTTCTGATCTGAACAAAGTCTCTCCTGGTTTGGAGAACTCAGCCTTACAGCCAGCAGAAACAGAGAACTCTTTCCAGTCCACTAAGAGGAACCCAGATGAAGATGGTGTTCTAGTTCTGGAGAGGAGAACCCAACTTGAAAGCTTTGAGAAATATAAGAGAGCAGAATGTCCAAACTTAGTCAATGAACACAGTGATAGCAGACTGGCAAAGACCATTTTGCCTAAGTCTTCCAAAATGACAGcagaacaagacaaaacattAGCAGACACTTTGACCAACCATATTGACCTCAAAAGCAGCAATGTCCGATTTCTGAAAGGAATCCTTAAGAAAAAGTTCAAGTGTATGGGGGATGAAGGTGCCAAATTCAGTTACACCCCAGGCCATTTTACTTTCAGCAAACACGTGGCCATAGCTATTAGGGACAGTTTGGAGCTCAGTCGGTCTAAAGGCAGGGACCCAGAGAGCAACAAGTGCATTCAGAAGAAACTTCGCTGGTTGGACGAGGTGAATAGCGATggaggagaaaataaagaaatagtgACAAAAGAATTAAGCAAGCAAGCAGAAACTGAAAACAGACTAACTCAACCATCTCAACAGCCTTTAGTGGACCAACAACAGGGATCGTTCCGTTCGTGGTACATAAACATACCCTCAGGCGTACCAAACAACAACAAGCCTTCCTCTGCCCCAGCTGAGCCCAACTCAACCAAACAAGCCTGGTCAGATGTTGGTCCTCAGAAAGGAAAGCAGCAGGAGCACACAGGGGAATCAAGAATGGAAAAAGCAGCTTCCTGCACTACTGGATTTTGGGTTCCCCGGCGGGCGCATTCAGCCAGAACTGGCTCAAGCACCATTTCTTCCCAAGCCCGGAGGGGTACCATGATCAGGCCACAATCTTCCAGTCAGGTGCAACATGTGGTCAGAACCCAAGGGAAGGTCCTGGTGCCTCGGCCTCCTCCAAGATCTGAGGTAACTAGGGGGAACTcaggtcaggcagtgatgtaCATCACCAAGACAGGCAACAGCGATGAGCGTTCCCAAGGTAAAGCACATCTGGCAATGGAGCAGGTTCTTTATAAGGACTATCCAGAAGGTCAGCCTGTACCTCTGCACCACATTCTCAAAACAGATGAAGGCACTATATTGGACCCAGTTCCACCCTCCTATGCCTGCATGTACAAGACTGTGTCTAAAGGCATCTACACCTTCTGCCAGTCAGATGGCCAGGTAGGCAGCGGCAGTAATGGCTTTCAGAAAGGTATCTTGGATCGTACACCAACTGACGAGGAGATCTCACTGCTGTGGCATGGAGTGCGTAGTGCCTTAGCCAGCAAAGATGATGACTCTCGAAGCTTGCAGACTCACAATGGACCGTTGTCTGCTTTGCCTCAAACTAATGCCAATTTGTCCCATGTTACCATCAACGGTGATAGCCTGTTCAGCGGTGTCAAAGCAGTTGCAAGAATGGATGGCTTTTTACTGTCATCTTCCAATGTCAGGAGTCCACTGAGAAGACCTGCTCTGGAGAATAATATAGTGAAAAAGAGAACTGCAGCATTAGGTGACAGGAAACCCCCTGTCCTTTATCAGGCTACAGTGCCAATAACTGCAAGCAAAACTGACCAGATTGTGCATGATGAAGGTCCTGAGGTGATAGATAGTCATGAACAGGTTGCTGTAGACTTGTCTCAGTTCCAAAGAGCTGCTGAGTTCCTGCAGACACAGCGAGGCCTCAGTGCTCTCTCCCTGGAGGAACAGAAACTCCTGCAATCAATCGATAGACTCAACCACCGCCTGCAGTATGTGCAAGATGCGGCCGCAGGAAACACAGCACTGAAGGGTATCGTTGCCTTGGACCCTGCATATAGCTGGTCCTCAGCCGGAAAAAGGTGTTTGGTTCCAGCACCCAAATGTTGCAGGTCTACAATCAAGAACCAGTGAAGTCAGATATAATATCGTTGaaCCAGTCTCCCCAGCCTAGCGAGCGTTCATGTGCCACCCCGCGCAGGTACCGTGGCGGCTCAGCTGACAGCCGCACCCGCCCACACAGACGCTACTGACTTCAGCTCCCAGGATGCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122944 lncRNA upstream 613819 23749063 ~ 23754260 (+) True G103896
TU122937 lncRNA upstream 625764 23739688 ~ 23742315 (+) False cstf3
TU122936 lncRNA upstream 625819 23739651 ~ 23742260 (+) False cstf3
TU122932 lncRNA upstream 629326 23729878 ~ 23738753 (+) False G103889
TU123375 lncRNA downstream 96746 24480365 ~ 24484022 (+) False G104257
TU123377 lncRNA downstream 96746 24480365 ~ 24484096 (+) True G104257
TU123404 lncRNA downstream 181013 24564632 ~ 24571887 (+) True G104284
TU123458 lncRNA downstream 191873 24575492 ~ 24634405 (+) True G104325
TU123569 lncRNA downstream 379023 24762642 ~ 24764112 (+) True G104429
XM_026914312.2 mRNA upstream 18783 24339635 ~ 24349296 (+) False si:ch211-71n6.4
XM_026914313.2 mRNA upstream 18783 24339699 ~ 24349296 (+) True si:ch211-71n6.4
XM_026914329.2 mRNA upstream 33014 24323720 ~ 24335065 (+) True pex16
XM_026914405.2 mRNA upstream 492034 23856438 ~ 23876045 (+) False wt1b
XM_026914057.2 mRNA downstream 8679 24392298 ~ 24427128 (+) True yap1
XM_034305054.1 mRNA downstream 10673 24394292 ~ 24427128 (+) False yap1
XM_026914032.2 mRNA downstream 64722 24448341 ~ 24461703 (+) True six5
XM_034305318.1 mRNA downstream 79207 24462826 ~ 24467476 (+) True six9
XM_026913862.2 mRNA downstream 79209 24462828 ~ 24466786 (+) False six9
TU122935 other upstream 625764 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 738356 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 1093570 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 1094621 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 1095871 23272058 ~ 23272208 (+) True LOC113527010
TU123976 other downstream 911280 25294899 ~ 25306811 (+) True G104781
TU123982 other downstream 911280 25294899 ~ 25315213 (+) False G104781
TU124829 other downstream 2447359 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 2827770 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 3175217 27558836 ~ 27558946 (+) True trnal-caa_8

Expression Profile