RNA id: XM_026913470.2


Basic Information

Item Value
RNA id XM_026913470.2
length 4436
RNA type mRNA
GC content 0.52
exon number 9
gene id hcn4
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26694883 ~ 26789255 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCGCCTTGCCTTGTTGATTATTGACAGCCGATAGGGGGATCTGGAGGCTTGATGCCTCACTAACGTCCATGACCTCCGCGCGTCTCCTCTCCATCCTTCCGGCGCGTGCATGCTGAAGTAGCCccaaagctgctttgttttatttattttattaaggttttttttttttcttttctatgaCTTCTTTATGGTCTTAACGGAATAGAGAAGCACAGTGCCTTGCAACTGGAGTGGGCATGTCCCGACTGAACGGGAGCGCGCAGACCATTTGAGCTGACAGGTTGCATCCTTCCATGCGCAAAAGGCTTTACAGTTTGCCACAGCACGTCGGCCGGAGCGCTTCGACCATGTGCGACGGGGAAGACGGAGACCGGGACGCGCGCCGGAGGAGCATCCGGATGAAGCCGCTGCCGTCTCCGGGCGCCGCTGAGAGCAGCAGGAACGCAGACGCGGCGTCCGTGGCATCGGCGGCGGCGGCGCTCGCAGACCCGGAGGCGGCCCGAGGCGCGAAAAGCAACTCAAACGGTGACTGCAGGAGGTTTCGAGGCAGCTTGTCTTCGCTCGCCGGCCGCCACAGCCACGAATCGGACTCGGCCGAAGAGAAGCGTCTGATCGCCGAGGCAGACCCAAGCCCGAGCGAGGAGAGTCCGCCCGGGGcgagaggaggaggtggaggtagCGGCGCTGGTAGCACCGCTGGTGGAGGTGTGGAACCGGGAGCGCGCGGCACTCCAGAACGGTACCCGGGGTTTGCCAAGCTGGACGGCGGCATTGAACACGTTCTGCCCGACGATGAGAGGTACTACCAGGCGGGTTTCATGCACAGGCAGTTTGGTGCCATGCTACAGCCCGGGGTTAACAAGTTCTCCCTGAGGATGTTCGGGAGCGAGAAGGCTGTGGAGCGCGAACAGGAGCGCGTAAAGTCGGCCGGATTTTGGATTATACACCCCTACAGTGatttcagGTTCTACTGGGATCTCACTATGTTGCTGCTGATGGTGGGAAACCTGATCATCATCCCCGTGGGCATCACCTTCTTCAAGGATGAGCACACTCCTCCTTGGATCGTCTTCAATGTCGTCTCTGACACCTTCTTCCTCATGGACCTGGTGCTCAACTTTCGCACGGGCATCGTCAAGGAGGACAACACGGAGATTATACTGGACCCACAGCAGATAAAGATTAAGTATCTGCGCTCATGGTTTGTGGTGGACTTCATCTCCTCTATCCCAGTGGACTACATCTTCCTTATTGTAGAGACGCGGATCGATTCGGATTTCTACAAGACGGCACGTGCGCTCAGGATTGTCCGTTTCACAAAGATACTCAGTCTGTTACGTCTGCTGAGGCTGTCCAGACTCATACGCTACATTCATCAGTGGGAAGAGATATTCCATATGACCTATGACCTGGCCAGTGCGATGGTGCGTATCGTGAATCTGATTGGCATGATGCTCCTGCTGTGCCACTGGGATGGCTGCCTGCAGTTCCTCGTACCCATGCTGCAGGACTTCCCTCCAGACTGTTGGGTCGCCAAAAACAAGATGGTGAACGATACGTGGGGCCAGCAGTACTCATATGCCCTCTTCAAGGCCATGAGTCACATGCTGTGCATCGGTTACGGCATGTACCCTCCAGTGGGAATGACGGACGTTTGGCTCACCATCCTCAGCATGATCGTTGGAGCAACATGCTATGCTATGTTTGTGGGCCATGCCACGGCACTCATCCAGTCTCTGGACTCCTCACGCAGGCAGTACCAAGAAAAGTATAAACAGGTGGAGCAGTACATGTCCTTCCACAAGCTGCCAGCAGACATGCGTCAGAGGATCCATGATTACTACGAGCACCGTTACCAGGGCAAGATGTTTGATGAGGAGAGCATCCTGGGAGAGCTGAATGAGCCGCTCAGGGAGgaaataatcaacttcaactGTCGGAAGCTGGTGGCATCGATGCCTCTGTTTGCCAATGCTGATCCGAATTTCGTGACCTCGATGCTGACGAAGCTGCGCTTTGAGGTTTTCCAGCCTGGAGACTACATCATCCGAGAAGGAACCATCGGGAAGAAGATGTACTTCATACAGCATGGAGTTGTTAGCGTGCTCACTAAAGGGAACAAGGAAACCAAGCTGTCAGATGGTTCCTACTTTGGAGagatcTGTTTGCTGACGAGGGGAAGGCGTACAGCCAGTGTCCGAGCGGATACATACTGCCGTCTCTACTCCCTGTCAGTGGATAACTTCAACGAGGTGCTCGAAGAATATCCTATGATGAGGAGAGCCTTTGAGACTGTCGCTCTGGACCGCCTCGATCGTATAGGAAAGAAGAACTCTATATTGCAGCACAAGGTCCAGCATGACTTAAACTCTGGTGTCCTCAACTATCAGGAGAATGAGATTATCCAGCAGATAGTGCAGCACGATCGAGACATGGCGCACTGTGCCCACCTGATGCAAAACCAACGTTCCCCAGCTCCTCCATCACCTACTCCGGTCATTTGGGCCCCACTCATCCAGGCCCCTTTACAAGCAGCTGCTGCTACAACATCAGTTGCTATTGCCCTGACCCACCACCCTCACCTGCCTCCCACACTCTTCCGCCCTTCTACCTCCTCTTTGGGTTCAACAAAAGAAGCCCCAAGAAGCAGGTTCCAGGTTGTACCCACATCGACAGCTCCTGGTTCAGCTGGAGACTCGCCTTCGAGCACCCCTCCAAAGCCTCGTACTGGAGTGGACACTCCTCTACTTGCATCCTTCCGGGCTCATCATTCAACAGGGCCACCTGGGTCAGGCAGTGGCAACCACCAGGCCTCCAGAAGCAGCATAAGTGGAGTTTCACATCCTGGGCCTGGTCGGGCTTCTGCATTCCCCACTGGCAATTACTCCAGATCTGCGTCTCCCACATGTAGTACTGCACAGCTCCATCCTCCACCCAAACACAAGCAGCCCTTCCCACCAAGTACCCCACCACTGTCCACTCACCTCCAACAAGGCAGCACAGGTGCTGGGACCTTGTCTGGGGCAGTAGGTGGCGCAGTGAGCATTGCTGTGAGTGGAGCAGTGGGGGATATGTCAAGTGGATTGACCACAAGTGGGTCTCCTGGGGGTCCATTAGTTGGTGCCACATGTGGTCTCTTGACCACAATATCTTCAAATGTTAGCCCTCTTTCAACTGGATCATTCAGCCATGCCCCAAGTCAGCTCCTCCATGGTCAGCAAACACAAAATACCAAACAGACATCTGCATTTCATCAGTTTGCCGGTGGGGGTGGCAGGACTTCTAGTACATTAAACCTCTTCCATACACCCACAACTGGATCCCCGTCCTCCACCCTTTCCCACATTACTCCAGCCCTTGAAGGCTCTCCTTCATCAAACACACAATCCATCAACCTACGgtcctccttttcctcccagCTGCCTTTAGAAAGGTCAGCATTAGCATCTCTTGCTCAATATGGCTCAGCTAATGCTTCTCCCTGCTACACTCCTCTAGCCCCCAGCCCCACAGTCCAAAGTCCTGGAAGAACTTTCCACTACAGTGACCCCTCCAGTGCTGCAGGTTCCCACAGCTCTCTGCTTATGCCCCAGCATTCCTGCCCCGTTCAACTGCCCAGCTGTAACATTTCAGGAACTGAATCGCCGCTGGGCCGCTTCTCTGAAGATATGAAACTGTTGTCTAGCTCTCACCCCTTGCTAAGTGAAGAGGTAGCCCAGGCTGTGGCTCATTCCTCCCCTCGATCATCCATTGAGCCTGGCTGCCGCCTCTCCCCTTACTCTTCCCCGACACTGATGCCTAAGCCGTACAGCTCCATATCGGGGCACTTTGCTTCCCCCTTACAGACTTCTCCCAGTGCACGGCACCACACCCCCTGCATAGGGACGTCACCCTCCCTTCCATTCCGCAGATCCTCAGAGGCCCATCCTTCTGAACTGGAACCCCTTTGCGCCAAACTTCCCTCCAATTTGTGAGGTTAGATCACACCCTCCTGTTCACCTGTGGACCTGTAACTGAGTAATAACAATCCTTTTTTGTgtgacacttttatttcattatttatctagattacactgtgttttaaacttattttagGATATCTAAATAttactgtgatataaaaaaaaatgaaggtgtATCCACGTAAATTAGAAATTTAGATTACTCGTTTTGCTTTGTCATTctctattttttattcattaatatataagtgaaaatatctaTTTAAAGCTATGTTAATCAACCAATAGGAGGGTGTGAAATATTCCATACATAAACATTTGAGACCATccattttccacatttcattggTTTGTGCGTTTGAAACGGACCACACAGAAGGACTATTCTGCAGGAATCTATGCACTGAAACCTGCATTCTGACTTTTTCTGTGTTCAAATCAATCTTTTTAGTAAAAGAGAAAGTCTACACTC

Function

GO: NA

KEGG:

id description
K04957 HCN4; hyperpolarization activated cyclic nucleotide-gated potassium channel 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124739 lncRNA upstream 3206 26691434 ~ 26691677 (+) True G105490
TU124727 lncRNA upstream 83623 26610941 ~ 26611260 (+) True G105479
TU124690 lncRNA upstream 162795 26531335 ~ 26532088 (+) True G105449
TU124691 lncRNA upstream 167076 26525920 ~ 26527807 (+) True G105450
TU124687 lncRNA upstream 178103 26513436 ~ 26516780 (+) True G105446
TU125000 lncRNA downstream 274100 27063355 ~ 27063862 (+) True G105733
TU124999 lncRNA downstream 275436 27064691 ~ 27066023 (+) True G105732
TU125117 lncRNA downstream 340093 27129348 ~ 27129629 (+) True G105841
TU125136 lncRNA downstream 352590 27141845 ~ 27145031 (+) True G105855
TU125251 lncRNA downstream 440529 27229784 ~ 27234224 (+) True G105904
XM_026913539.2 mRNA upstream 13458 26648551 ~ 26681425 (+) True nptnb
XM_026913540.2 mRNA upstream 13458 26648551 ~ 26681425 (+) False nptnb
XM_026913541.2 mRNA upstream 13458 26648551 ~ 26681425 (+) False nptnb
XM_034305272.1 mRNA upstream 50054 26636409 ~ 26644829 (+) True LOC113526591
XM_026913776.2 mRNA upstream 60386 26622446 ~ 26634497 (+) True chrna5
XM_026913392.2 mRNA downstream 31912 26821167 ~ 26827022 (+) True dhdh.2
XM_026913267.2 mRNA downstream 61707 26850962 ~ 26875332 (+) False LOC113526325
XM_026913268.2 mRNA downstream 61707 26850962 ~ 26875332 (+) False LOC113526325
XM_026913271.2 mRNA downstream 61707 26850962 ~ 26875332 (+) False LOC113526325
XM_026913266.2 mRNA downstream 61708 26850963 ~ 26875332 (+) True LOC113526325
TU123982 other upstream 1379670 25294899 ~ 25315213 (+) False G104781
TU123976 other upstream 1388072 25294899 ~ 25306811 (+) True G104781
TU122935 other upstream 2952568 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 3065160 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 3420374 23274359 ~ 23274509 (+) True LOC113527008
TU124829 other downstream 41723 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 422134 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 769581 27558836 ~ 27558946 (+) True trnal-caa_8
trnal-caa_9 other downstream 771132 27560387 ~ 27560497 (+) True trnal-caa_9
XR_003402810.2 other downstream 1155535 27944790 ~ 27966308 (+) True LOC113526832

Expression Profile