RNA id: XM_026913513.2


Basic Information

Item Value
RNA id XM_026913513.2
length 1972
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC113526465
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27990564 ~ 28063149 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTGACCTGTGGGGCTTTAATATACGCTGCCTTTGCTTCTCCTTTTAACCAGCAAGGAAAAATAAGCTCAATGGGTTTAGTCAGTTTGATTGAGACATGAGCATGACCGGAGAGCTGAAATCAAGCCGCTCGAAGACAGGAGGAGTCAAGAGGCCGAGCAGTGCTGTGTACGGATCAGAGTACGAGCTGGACTACGACTGCTACCAGGAGGAACTGTATGACAGGGTGTTTGATTACCAGCGTGTCCCGTCGGCGGTGCCTGCtctgcctcacagttccagcCTGGCCAAGAGAGCACGCTCGTCTTCTTCCAGGCAGAGACGCAGCCGAGACCGCTCGTCCTCCAAGAGCTCCTCCAGACCCCACTCTTCCAGCAGAGCTAAGTtgaaaatggaggagctgcagaCCATAAAGCGAGAGCTGACGATGATAAAGGTTCAGATTGATGGCCTGCTGGACAGTCTGGACAGGATGGACAGACAAAGGCAGGAGCACACAGGTTCTCCATTTTCTCAAGGTGGGAGCTCAGGGGGTTCACCGTACCACCCATCAACCAGCAGTCGAGAGGGATCTCCCAGAACCCCCAGCCCACGCCGCTGCGCCCGGAGAGACACTCCTGAGCTGGGAGAGGCCAGCGACGACGAGCCGCACATGATGAATCATCACAACTCTGACATGGAGGACGAAATGTAAAGAGGCTCAGCTCAGACTGGTCTGCTGAGTGATGTAGCAAGACAGAAGCGCCTCACATGCAGAAGAAGAGCCAACGTCTGTCTCCACGCCGACACGACACTCACGACACAACACATGCAGCATATATAAATAATCCTGGGCCTCATCAGTAAAGTTGGAAGTTGTGAGATCTACATTTAGTTTGTTCTTTATAGCACTCGTGTATTGGCTTTCATTCCTGTTTGTAGTGCCAGGTGTCATTACAGCTACTCCCGTTCTCCTTACAACTCCAATAGCTTTATTAAATTGTATTGGGTGtcatttcaatgttttttttattctaggaATTTAAAAAGGTCTTTATAAGTCCAGTGGTCATTACTGCATATCCTGATAAATTAGCTTTATATGAGTGCAATACTTTAAAGCGTTAAGCCTTTATGTAATGCCAATAGCACCTGCTAAATGTGTGCAGGTTTAATCGTTCTTattctcatttttaataaaaaaattattttagcagTTCAAATGCAATCAGAAAGACAAATGGGATAACGGATACCTGATTTCTGATTGCATTCGGTTTGCACcttcagaatatttttttagtattcCATGGGATGAAGGATACAAATGCATCACATCACAATGTGAGCTGAAGCCACTGAATCAATAGCACCTCTAATGATGGAGGGAAAATAATGGAATAGTGGAATATGGTTTGGTTGACTGCCATCACAAGGCAACGATTTAGAGCTACATTGTAGAGGTATAATATTCCTGTCTTCTCTAGCTCTTCATGctgggttgccaggtctgtgtgacaaaaataaaaaccagcCCAATAACAAAAACCTCAAAATCTGCAGCTCCTAAACCTTATACACTGCTCCAGCATCATGACGatgtttaaatatgtgtttAACAAAGTTTCCCTAATCTGTTGTCTCCTATTATTTCATACTGTCATAAagctatataatataatataatataatataatataatataatataatataatataatataatataatataatataatataatacataaaagCTTAATAACTCATACAGTAATGTGGCTCTGCGGCTCTCAAActttatcagtttttttaaataatgtaatttaataatggctactttttttaaaccactcTTTTAAGTTTGGCTGAAGCAGATTTACTgattctttatttcttccttcattcattcattctactTCCCTgcattctttttctccttccttccttgcttccttccttccttccttccttctctctactttcctgatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125500 lncRNA upstream 273147 27726402 ~ 27729161 (+) True G106118
TU125432 lncRNA upstream 399574 27602158 ~ 27602734 (+) True G106064
TU125360 lncRNA upstream 456791 27543059 ~ 27545517 (+) False ddx11
TU125340 lncRNA upstream 503678 27498431 ~ 27498630 (+) True G105981
TU125251 lncRNA upstream 768084 27229784 ~ 27234224 (+) True G105904
TU125760 lncRNA downstream 34580 28097729 ~ 28098001 (+) True G106343
XR_004578326.1 lncRNA downstream 170658 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA downstream 170658 28233807 ~ 28244868 (+) False LOC117597547
TU125917 lncRNA downstream 327049 28390198 ~ 28450197 (+) True G106477
XR_003402825.2 lncRNA downstream 366854 28430003 ~ 28448635 (+) True LOC113526961
XM_026914227.2 mRNA upstream 36000 27944790 ~ 27966308 (+) False LOC113526832
XM_026914106.2 mRNA upstream 84160 27904431 ~ 27918148 (+) True pdpr
XM_026914104.2 mRNA upstream 86368 27902771 ~ 27915940 (+) False pdpr
XM_026914105.2 mRNA upstream 86368 27902771 ~ 27915940 (+) False pdpr
XM_026914289.2 mRNA upstream 111048 27889761 ~ 27891260 (+) True LOC113526868
XM_026914079.2 mRNA downstream 3733 28066882 ~ 28070628 (+) False uraha
XM_034305052.1 mRNA downstream 3749 28066898 ~ 28070628 (+) False uraha
XM_026914080.2 mRNA downstream 3753 28066902 ~ 28070628 (+) False uraha
XM_026913309.2 mRNA downstream 8535 28071684 ~ 28078887 (+) True pdcd5
XM_026913310.2 mRNA downstream 8566 28071715 ~ 28078887 (+) False pdcd5
XR_003402810.2 other upstream 36000 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other upstream 40537 27959525 ~ 27961771 (+) False LOC113526832
trnal-caa_9 other upstream 441811 27560387 ~ 27560497 (+) True trnal-caa_9
trnal-caa_8 other upstream 443362 27558836 ~ 27558946 (+) True trnal-caa_8
TU125244 other upstream 787738 27211389 ~ 27214570 (+) True G105898
TU125683 other downstream 3763 28066912 ~ 28070685 (+) True uraha
XR_004578358.1 other downstream 83114 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other downstream 83114 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other downstream 83114 28146263 ~ 28161869 (+) False def8

Expression Profile