RNA id: XM_026913526.2


Basic Information

Item Value
RNA id XM_026913526.2
length 7559
RNA type mRNA
GC content 0.51
exon number 21
gene id LOC113526468
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 22985409 ~ 23099891 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaaacacacacaaaaaaacacagcacataaGTCAACCTTAATGATGTCAGAATCACGGTGAGCACACTGGTGTCGCAAAGAAAGATGCGTTCACGCAGAGACGCTCTCAGCTTCCGAAATGGGATTTACTTTGGGCAAACTTTCTGTGGAGTTCAACAAGTTGGAAGCTTGCTGGTCAGACTTTGAGCCTCTTTTCCTCCTTCATGGATGGAAATCAAGCGGAAGGAAAGCAATACTGGGAAACTCGCGCTTGCGTCAGTTTCCCTAAGGTGTAAAGTTTCGTAAAGTTTCGTAAAGTTTCCTAAGTTTGTTGTTGTGTAAAAACAGAGCCGGGTCAATGGGGACGCGGCGTTAGTTTACAGGTTGTAAAAGCAAAGacgcaaaacaaaacaaaacaaaaggctgTGGATCTATCGAtgaactaaaaacaaacaaaaaacaacaacaaaaacgaGGGAGTTTAGACGCCAGAAAGTCGGGAGGGAAGACAGACGCGATGGCAGAGAAGGAGACGCAGAGCAAAGCTGCGGTTTACCGGAGTGTCTCTTTCAAAAAGCTGCACAATTGGAAGGCCAATAAAAGCGGCTCGGGAGCCGAGGATCAGCGCCACGGATCGGAGGATTTGGAGACTGGAGGAGCCCTTCCCCCTCCGGCTGCACAGCCCTCGGATATGCGCAGTGCTGCTGTGGCTAGAAAAGTTTCCAAAATCTCAGCAGCCAGCCTCTCGAGGGCAGAGCTGAAGAAGGGTTCCACTCATACCATTTCACCCTCAATCCGCCAGCTCTCAGAAAAGTTTGGAACAAACACAAATTCAGGCAGCACTTCAGTCCTTCAGTCTGCAGTTTCACACAGGATTAGATCTCCAGATGGACCGTCTTCCCAGGATATTTCAGGATGTTTCCCTGATCAGGGCAAAGATCTTTCAGGAACCCTGACCGACAAACTTTTGGATCATAAGTGTCAAGAATCCGTCTCTGGCTCGGATTCGGATAGAGGTCATAAACGGAGGGTTCGAATGATCGGAGGTGGCACACAGGCAGGAATTTCAACATGCAAGTCTCATCGCCACCATCGCTCTTCCCTAGGCGAAACTATTCATGTTGATTCAAGCTGGCCGAGCGTTACAAAAATTAGAGAGCTTTTTGGGGATGGTCACAGAAAGAAGCACAAGTCAATGTCAGATGGAGAGGACTTGAAATCTGATGACTATCACCTTCACCATTCCTACAGCACAAAAGACGGCAACACGTCCTCAGACAAGAGCGACAGGCAGTCGCCACTGCAGCCAAGAGGACACTGGCAGAATACAAACAGCTCAGATCATGATGCTAACAGACATCAGGGTATGGACTCTGCTTTTAGCACAGAAAAGCATTCTCATGATGGTGATCTTAGCTCTGTGACGAGAAAACTGTCAACGGATAGAAGTAGAGTTGAGACTCACAAAAGTAGCAGAAAGGGCTGGACGGACAGTGACCCCCGACCCACTCCACCCACCCCTCCACCTCGCAGTAGTTCTGTTGCACTGCCTCTCAGGTCCCATTCGTGTGCTCACAGTGAGCAGCTGCAGGAGCAGAGACAGTGGGCGAAGCAGCCGCAGCCATCAGATAGTTTGCATTCCTCGCATAGTTCCTCAAAACCACAGACGGGCTCCTCCGTGGAATCGGTCAGCACTCGTGAGAGATTAAGCTCTGGAGAAGAGGAGGACGAGTCTGGAGGGCAGACAGGTAGAAAAACACTCTCATTTGTGCACAGCAGTGAAGGAATTGGCACACACATTTCAAGGAACAAGCATGATGCCTGGGCCAAACTCTCTCATAGGTCTTCAGGTAGTGAGGAAGACAGCCCAGCAGGATTAGCTCATCAAGTTCGACGTCGTTCtttgaggaaaaagaagaaaagcaatTGCAGTAGAGAGAATGAGGAGTCTGATGACAGTGACGACCAGCATGTGATGATGGAGCACCTGGAGCGCAACCAGCGTTCATGTGATTCCCAGATGGAGGGACATAGGCTTGACAGCTTACGGTCTAAGGCCTGCTGTAGTGGGCAGATGTGGGAGAGAGGGCACACGGCTCGAGGTTCCTCTGTGGTTCAGGACAGTTATAGGCGCCTTTGTAAAGCTTCTGAGGGTCAAGTTGGCACCAGTAATGTCCCATTTGTGTCACGTGTATCAAAGGTAACCATTCCCTCATTTCTCTCCACACCCTTGGGGTCACGCTGTAGCAGCAGATATTCCAGTACTGAGACTCTGAAGGCTGAAGATCTTGTGAGTTCAACGTCCAACAGAGCCTCATCTTCTGTCCTAAGCAAAACATATCATGGCAATGCTACTATGTACCGCTCACCTAGTTTTGGGCATGGAGACAATTTTTCTCGTGCCCCTGTCCGTGTTCGTCCCTGGTTGGTGCCTAGCTTGAAACAAGGAGAAGGCATTCGTAATGCTGCAGAAAACAGACTTGGACGCCGTTCTGTCAGTCATGAAAAAGATAAAGACAGAATATCCATGTCAAATCCTGATATTGCTTCAGAAACTTTGTCACTGCTGAGTTACCTGAAAACTGATTTATCAGAGCTAAGGATGAAGAAGAGAGGCCAAGATGGTGAGGAAGGTCTGAACTCCAGCCTTCAGGGTGCTCAAAGCGTATCAAATATGTACAGAATGGGCTCAAGAACCTCAGGGTTGAACTCCAGAAGGCCCTCGCTAAAGGATCTCACTGCTACTTTGAGGAGGACCAAATCTTTCACTTACTCAGAGAAACCATTAGGGTCAGCTATGAGGAGTTCCTCTGAGCAAAGACTGGACTGTGAAAGTGATGGAGATCGAGTAGTCATCTCTGATAGagaggtggagagtgatgattgCAGAGGTTGTTATGACTATGAAGAGCAAATGCCAACCCCTCTACAAGATCGCTACGTTCAAGAAGCAAGACAGGTAATAAGGGATATTTGTCAAATGAGTGCTAACAaggattatgatgatgatgatattgaaGGCTTTAAAAGAAATGGGACTTTTGATGTGGTGGAAGCTAATAAAGAAACTAATATGACAAAGCAAGTGgagaggatggatggacagattgtagatactgtaaacaaaaaacaggcTGATATAGAAAGTGGAAAATGTTTACCAAGGGGAAATTCAGAGGAGAACATGTTTGGTGATAAGTCATTGGATGAACTTTCAGGACATGAATCAAGTCTGACAGATGAAGGAATTGTCACAGAGCCGGAGGCTGGCTCATATGGAGGGCTGTCCTCTGGCACAGACTTGCTAGGCCAGACGCTCACTGTTTGGACTCAGTCTGGACTGTATGAGGAACAGTCATCCAACATGACGCCGGAGAAGTCTCTTTCCGCTCCTGCCCCATCTGTGAGGACAGAATATGAGGCAGTAGCTATAGGAGGAGATGTAAGCATCAGTAAAAACGTAAACCAGGCTTCTTTAGAGGCTCCGCCTACTCCCAGCGCTCTTCGAAGACGGAGAAAATTCTCCACAGCTGCCAACAATGGCTCAGACTCCAGCAATGGCAGTAATGGGGAGTCAAATGGTGAGTCTGCTTACCGCTCTCTCAGTGATCCCATGCCACACCGAAGTCGCTCGGTGGCAGAGGATGGCAGTAACAGCTTTTCTATGGACAGCAATCTACTTGGCTCACTCTCTCTAAACTCAAAGGTGGGTGTAAGTGCAGACTCCTCTGCAGCAGATCTGTCAGAGTGTACCGGCAGTGCAGCTAGTGACCTGTCAGTGTATAGTGACTCTCTGCGGGATTACAGCACTGTGATACAGAGCATAGTGCATGAACCAGGTGCAATGGACAAGCTCATTGATGAGAAGGCAAACGGAAAAgcagtgaaaaagaaaagctttagTGACCCCAGCAGACGGGGAGAACTGGCTTCTCCTGCCCTTGAAGTCAGGAAACATCCTAACGAACCTATTAACGAGTTAGAGCAGCCCATTCCTCCTTCCAGCAGTGAGCCGATCTTGTCGGAGCAAAGAGATGAGTTGTGGGAGCTGAACAGTGAGCAATGTCAGCCATATTCCAACAGGAGGACTCGATCCCAATCAGAGCATGTTTTGCCCTGTCATCTTGACCGCAATGGAGTTAATAAAGATGGCAACGAGGAGCCAAAGTTGCCCTTTGACCCAAAGCTGGCCCAGGTGTTGTCTCCTTGCATAAGTCGTCGCGGTTACAAGAAACGCACACACCGAGTGACACATCAACAGTCTTGTGATTATGGGGACCAGTTAGACGAGCAGCAAGAGGATCAAAACTTTGAAGATCATCTGGATCCTTCCAATCCCTCCATCCCGCCTCAGCTTTCTGTACCTAAAATAAGGCCCAAACACGTACGCCATGCCAGTGAGCCTGCAACATTTGTGCCCATTACACCATCTAACCAGCCGCGTAGCAGCTCCCAACACCTCTCAAGACACAGACAAGAAGAGGGAACTCCGTCTTTGGAGGATGTGACGGAACAGTACATTCTGGCCTTGAATTCACCTGAGGGATCTTCAGAAGCCCCCACTGATGGAGCTGTTGTGGAAGGTACCAGCTCTGCTCCTGCAACAGCCACCACTGACCCCAAACTGCAGAGGAAATCCAGCGATGAGCTGACCCAGGCCCCGCTTAAAACCAAACCACGAGTGGACATGAGAAGACATGTCATGATGACTCTACTGGACACTGAACAGTCATATGTGGACTCTCTGAGAACGCTGATTCAGAGCTACATGAAGCCACTGAAGCAGGCGGAGAACTCGCCGCTCTGCGATCCGTCTCTGGTGGACGAGATGTTCTACCAGATCCCTGAAATCCTGGAGCACCACGAGCTTTTCCTGGAGCAGGTGATCAGCTGTGTTAATGACTGGCATGAGCGCCAGACCATCGGCGACCTCCTCGTCCTGTCGTTCTCCAAAGAGGTGCTGGCTAACATTTACTCGGCATACATCGACAACTTCTTGAATGCCAAAGACGCAGTGAGGATCGCTAAAGAAGCCAAACCTGCTTTCATGAAGTTTTTGGAGcaaagtATGCGAGAGAATAAGGAGAAGCAGGCTTTGGGTGATCTGATGATCAAACCTGTGCAGCGCATCCCGCGCTATGAGCTCTTAGTCAAAGATTTGTTGAAACACACTCCAGAAGACCACCCAGACCACCCACACCTGCTGGATGCTCAGAAGAACATAAAGCGATTGGCTGAGAGGATCAATAAGGGACGACGTAACGCGGAGGAGGTGGAGCGAGAGACGCGGGTCATGCAGGAGATCGAGGCACACATAGAGGGGGTGGAGCATATCCTGAATCCTCAGAGGAAGTTCCTGAGACAGGAAATGGTGATGGAGGCGAAATCGGTAGGAGGGAAGAAGGATCGCTCTCTCTTCCTGTTCAGTGATTTGCTGATTTGTACCACTCTGAAGAGGAAGTCGGGTTCTTTGCGTCGGAGCTCCATGAGTCTATATTCTGCTGCTAGTGTCATTGACACCTCCAGTAAATATAAGTTCCTGTGGAAATTGCCCTTGGAGGATATCGAGGTAGTGAAAGGCTCGAATCAGGCCACCAACAGGGATACAATCCAGAAAACCATCAGCCGTCTCGATGAGGACCTCAGTACACTCGGCCAAATCAGCAAGCTATCAGAGACGCTCAGCTTTCCTCACCAGAGTCTGGATGACGTGATAAAGGACCTGATGGCGTCGGTTCACAGGGAATTAGCAGAGAAACAGTCCCTGGCTTTCAGCATGACCTTCTTGCCCACTAAACTGGAGCTGAGCACGGCGTCTGCAGACAGCACGTTCATCTTCGAGTTCAGCAGTCCAGACGCACGCAGCAACTTCGAACAGGCCTTTGAGGAGGCCAAAAAGAAGCTTGCTATGAATAAAGACGAGTGGGACCCTGAGTTCCTGAAAGCCATCCCCATCATGAAGACCCGCAGCGGCATGCAGTTCTCCTGTGCCTCACCAAGCCACAGCAGCCCGGAGAACGTGTGtgaggtgtgggtgtgtaaTAGTGACGGCTATGTAGGCCAAGTTTGCGTGCTGAGCATCAGGGCCGAGCCCACCGTGGAGGCCTGTATCGCCGTCTGCTCTGCACGGATCATCTGCATCGCAGCTGTGCCAGGACTCAAGAGCAGGGAGCGTGTGGAATCGAGGCACTCTGCCCCTGCGGCACCGTCCGAGTCACTGCCGGCTCCTTCTGTCCAACCTCAGCTCCACATCTCCATCTCTCGTTCCTCTCCGGAGCTCAGCGACCCTCCTGCTCCCACAGCGCCTGAGCTAGGGCCCTTTGAAAGTGACGACTCGGATGATGAAGACTCACCGAGCCCCTCGTCCACGCTGCAGAGCCAAGCATCACATTCCACCATCTCATCCAGCTATGGCAATGATGAGGGAGCAGGCTGTAAGGACATGGCCCCTGAGACTACCAGTtcagaggaggagcaggagTTCTCCAGCGGGTTTGGGCCACAGCGACTGAGCGTCGACAGCCCAATGGACGGCCGTGCCATGCGCAGATCCAGCCGAGGCTCCTTCACCCGTGCCAGCCTGGAGGACCTGCTGAGCATCGACCCGGAGGCCCACCAGAGCTCAGTGTGGCTGGGCACCGAGGACGGCTGCATCCATGTTTACCAATCGTCAGACAACATCAGGAACAGGAAGAACAGCATGAAGATGCAGCACTCAGCCTCCATCTTGTGCATCCAGTATCTCGACAACAAAGTCTTTGTGTCCCTTGCTAATGGAGAAGTGATTGTGTATCAAAGGGAAGCAGGGAGCTTCTGGGATCCTCAGAGTTCTCAGACGTTGTGTTTGGGTTCCCCGAGCAGTCCCGTCACTAAGATGGTCCCAGTGGCAGGGAAGCTGTGGTGCGGCTGTCAGAACCGGATTCTCATCATCAACACCAGCACTTTAACacaagagcaCTCGTTTGCAGTGGGCCAGGACAGCGGGCGGTGTGTGACCTGCATGGTGAGCTATGGTCAGGGTGTGTGGGTGGCTCTGCAGGGCAGCGCGCAGGTTCGTCTGTACCACTCCACCAGCTATGAGAGCATCGCTGAGGTGGACGTGGCACCTGCTGTTCACAAGATGCTCGCAGgctcagATGCCATTATCCGCCAGCACAAGGCTGCATGTCTGAGGATCACAGCTCTCCTGGCCTGTAGAGACGTGTTGTGGATTGGGACGAGTGCCGGGGTAGTGCTCACTCTGCCAGTCCCACCTGTGACCTCCACCGTAGGGACAGTTCCATTGCGGGCTCCGCTCGTGCCCACTGGCTCTGCCCACGGCCACACTGGCCACGTCCGCTTCCTCACCTCCATTGAGCTGCCTGAGGGCTTTGATGTCCACTTTCCCTCCCAGACAGAGTCAGAGCTGAGTACTGACGGAGGAGTGCAGCAGCGCCGATCCTCCACCCTCCTCACAGGTAAATCCACTCTGCTGGTGATCAGCGGTGGAGATGGCTACGAGGACTTCAGGCTGAACAGCAGCAGCGAGACGGTGGGACGAGACGACAGCACCAACCACCTGCTGCTGTGGCGCGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122270 lncRNA upstream 1912 22942709 ~ 22983497 (+) False LOC113526422
TU122267 lncRNA upstream 85972 22899063 ~ 22899437 (+) True G103301
TU122262 lncRNA upstream 116126 22866740 ~ 22869283 (+) True G103297
TU122232 lncRNA upstream 293099 22692092 ~ 22692310 (+) True G103270
TU122206 lncRNA upstream 458673 22526375 ~ 22526736 (+) True G103246
TU122293 lncRNA downstream 7169 23106142 ~ 23106241 (+) True G103327
TU122322 lncRNA downstream 41874 23140847 ~ 23148816 (+) False relt
TU122343 lncRNA downstream 76578 23175551 ~ 23259191 (+) False LOC113526573
TU122349 lncRNA downstream 88179 23187152 ~ 23187663 (+) True G103376
TU122607 lncRNA downstream 316522 23415495 ~ 23416103 (+) True G103606
XM_026913425.2 mRNA upstream 1810 22952581 ~ 22983599 (+) True LOC113526422
XM_026913424.2 mRNA upstream 1810 22952581 ~ 22983599 (+) False LOC113526422
XM_034304967.1 mRNA upstream 1810 22953375 ~ 22983599 (+) False LOC113526422
XM_026913426.2 mRNA upstream 1810 22974443 ~ 22983599 (+) False LOC113526422
XM_034305148.1 mRNA upstream 51384 22883294 ~ 22934025 (+) True fam168a
XM_026914305.2 mRNA downstream 14111 23113084 ~ 23148872 (+) True relt
XM_026914310.2 mRNA downstream 14111 23113084 ~ 23148872 (+) False relt
XM_026914306.2 mRNA downstream 14111 23113084 ~ 23148872 (+) False relt
XM_026914308.2 mRNA downstream 14111 23113084 ~ 23148872 (+) False relt
XM_026914307.2 mRNA downstream 30217 23129190 ~ 23148872 (+) False relt
TU122269 other upstream 4259 22952677 ~ 22981150 (+) False LOC113526422
TU122021 other upstream 1190740 21787116 ~ 21794669 (+) False zbbx
XR_003402807.2 other upstream 1887568 21026027 ~ 21097841 (+) False LOC113526807
TU120293 other upstream 3861532 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 3864283 18957428 ~ 19121126 (+) False sema4ba
trnak-cuu_22 other downstream 64134 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 173085 23272058 ~ 23272208 (+) True LOC113527010
XR_003402831.1 other downstream 174335 23273308 ~ 23273458 (+) True LOC113527009
XR_003402830.2 other downstream 175386 23274359 ~ 23274509 (+) True LOC113527008
TU122865 other downstream 516130 23615103 ~ 23629723 (+) True G103830

Expression Profile