RNA id: XM_026913603.2


Basic Information

Item Value
RNA id XM_026913603.2
length 2442
RNA type mRNA
GC content 0.48
exon number 6
gene id chrnb4
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26554468 ~ 26565211 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggagcagaagaggaggagaggatcAGGAGCgcaggagaggagaagaggagcagaagaggaggagaggatcAGGAGCGCAGGAGCGCAGTGCTGCTGTGTATTATTACAGGGAGGGGAAAACCACAGCTCTCTGTATTCACGCCGACAGGAAACAGCTGCACGCTCTGAAACCGACCcggtgagtgtgtgggtgtgtgtgcaggtcCGTCCGGTGAAGATAAGGCGCGTCCCCGCTGCGTGTGAGCGCGTGATGGGAGTGAGTGAAGGGAGCGCGCACGGACAACGCGGCGTCGACCATGACACGGACCCTCGGCACCCTCCTTTACGCGTTTACCTTCGTCCAGAGTGCCATCTGTGCAGACTCTGAAGAGCGGCTCATGAACTGGCTCCTGTCAAAGGATCGTTACAACAACCTCATCCGGCCTGCCCTGAACAGAACGGAAAGAGTGACCGTGAAGCTGCAGGTCTCTCTGGCACAGCTCATCAGCGTGAATGAGAGGGAGCAAATCATGACGACAAACGTGTGGCTCACGCAGAACTGGAATGATTACAGACTGTCATGGGACCCGTCCAAATACGATGGAATTGACAAGCTCCGAATTCCCTCCAGACACATCTGGCTACCTGACATTGTGTTATACAATAATGCTGATGGCACATATGAGGTGACAGTCTTCACCAACGCTATTGTGCTGTTTAACGGCACCATCGCCTGGCTTCCTCCTGCCATCTACAAGAGCGCCTGCAAGATTGAGGTCAAACACTTCCCCTTTGACCAGCAGAACTGCACACTAAAGTTCCGCTCATGGACGTACGACCACACAGAGATCGATCTCGTCTTAAAGTCCGAAGTGGCCAGTATGGATGACTTCACTCCTAGTGGAGAGTGGGACATTTTAGCTCTGCCAGGAAGGAGGACAGTCAACCCTCAGGACCCGACTTATGTGGACCTGACGTATGATTTTATCATCAAGCGCAAACCTCTCTTCTACACCATCAACCTCATCATCCCCTGTGTGTTGATCACCTCTCTGGCCATCCTGGTTTTCTACTTACCATCTGATTGTGGTGAGAAGATGACCCTGTGCATCTCTGTCCTTCTGGCCCTCACTGTCTTCCTCTTGCTGATCTCCAAAATTGTTCCTCCTACATCCCTGGATGTCCCTCTAATCGGCAAATATCTGATGTTCACCATGGTGCTGGTGACATTCTCCATCATCACGAGTGTATGCGTGCTCAACGTGCATCATCGATCCCCAAGTACACATACCATGCCAAAATGGGTGAAGCTGGTCTTCCTGGACAAACTTCCCATGTTGCTTTTTATGCGAAGACCTGAAGGAAACTCATCCCGGCAGAGGCTACACCAGCGGAGACATCTCAAAGATAATAGAGCTCTGCTTGGGCTTAGTTGTGGAGCTCCCTGCAAGTCAGGAATGTCCTCTTCTGCCTCAGTCTTGCTTGCTGCATCTTCAGCATCAGCACTGTCTTCACCAGGACACTTTTACAGCAAAGGGACCAGCTTTTACAGGAAAGGTGATCAGCGACCTACGGAGTTCCTGCCCAATGGCAATGCCTTGAACCAAGGAGACACGAGAGGAGGTGGAGGGCTATCAGACCTGGGGGCTGATGTTCAAGAAGCAGTGGATGGAGTTCGTTATGTAGCTGACCACATGATGGGAAATGACGATGATCAGAATGTTATTGAAGACTGGAAGTACGTCGCCATGGTGGTGGATCGGATGTTTCTGTGGATctttgtaattgtgtgtgtggttgggacGTTGGGCCTTTTCCTTCAGCCAGTCTTCCAGAACCAGACAGTTCCTATCTATCAGCCGAATGCTGAATCCTCTAGGAGGGATGGGATGTAAAGAATGCATCAATATGGGATGACAAATACCAGATCTACATGTCCAAAAAAACGAGCCATGGTAGTAAGGCATTGAGCAAGGACTTGTGGTATAATCTTGAAGACAGTTTTCTTTTGGTATGCAGGATAAATTAGTCTTGAATGatggataaaaataatgaaGCCTTTATAATGGATGGCTAAATGTCTTCAGGATTACAGCACAAGTCAAATCACCTTGACTAACTTCTTTCTTTGCCTGTGAATACCTGAAAAACTTCTATAGACATCCAATCAGGACTAAAAATGTCACCAATTTTTGATTagtcatcatcagcatcatcgaTTAGCCAACATCACCTGCCTTCATAATGATGTCCACTGATATGGACAGCCACTGGTGCTTCAAGGTTATACGATTATATCAGGACACTTCACCTTAATACAAGGTCACTCTTcttctaaaaatattatttcaggCCAATAAACCagtgaattaaatatttattagtcAATGTTTAATGGTTCTCCTCTTTCTTCAGCTGTAGCAGGGCAATACAGCATTTTTACCGCAAATATTCAATTACCA

Function

GO: NA

KEGG:

id description
K04815 CHRNB4; nicotinic acetylcholine receptor beta-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124690 lncRNA upstream 22380 26531335 ~ 26532088 (+) True G105449
TU124691 lncRNA upstream 26661 26525920 ~ 26527807 (+) True G105450
TU124687 lncRNA upstream 37688 26513436 ~ 26516780 (+) True G105446
TU124552 lncRNA upstream 230968 26320009 ~ 26323500 (+) True G105320
TU124338 lncRNA upstream 649180 25903826 ~ 25905288 (+) True G105118
TU124727 lncRNA downstream 45730 26610941 ~ 26611260 (+) True G105479
TU124739 lncRNA downstream 126223 26691434 ~ 26691677 (+) True G105490
TU124808 lncRNA downstream 132767 26697978 ~ 26698178 (+) True G105548
TU125000 lncRNA downstream 498144 27063355 ~ 27063862 (+) True G105733
TU124999 lncRNA downstream 499480 27064691 ~ 27066023 (+) True G105732
XM_026914049.2 mRNA upstream 242966 26303120 ~ 26311502 (+) False ubl7b
XM_026914047.2 mRNA upstream 242966 26303145 ~ 26311502 (+) False ubl7b
XM_034305023.1 mRNA upstream 242966 26303332 ~ 26311502 (+) True ubl7b
XM_026913489.2 mRNA upstream 471195 26009102 ~ 26083273 (+) True insyn1
XM_026913488.2 mRNA upstream 471195 26009102 ~ 26083273 (+) False insyn1
XM_026913602.2 mRNA downstream 3384 26568595 ~ 26578544 (+) True chrna3
XM_026914348.2 mRNA downstream 49611 26614822 ~ 26622142 (+) True LOC113526907
XM_026914349.2 mRNA downstream 49611 26614822 ~ 26622142 (+) False LOC113526907
XM_034305274.1 mRNA downstream 49611 26614822 ~ 26622142 (+) False LOC113526907
XM_034305275.1 mRNA downstream 50420 26615631 ~ 26622142 (+) False LOC113526907
TU123982 other upstream 1239255 25294899 ~ 25315213 (+) False G104781
TU123976 other upstream 1247657 25294899 ~ 25306811 (+) True G104781
TU122935 other upstream 2812153 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 2924745 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 3279959 23274359 ~ 23274509 (+) True LOC113527008
TU124829 other downstream 265767 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 646178 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 993625 27558836 ~ 27558946 (+) True trnal-caa_8
trnal-caa_9 other downstream 995176 27560387 ~ 27560497 (+) True trnal-caa_9
XR_003402810.2 other downstream 1379579 27944790 ~ 27966308 (+) True LOC113526832

Expression Profile