RNA id: XM_026913754.2


Basic Information

Item Value
RNA id XM_026913754.2
length 9425
RNA type mRNA
GC content 0.45
exon number 24
gene id LOC113526575
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21340396 ~ 21463432 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGCTGTAGACTGTAAAGGAAAGAGGAGTGTCAAACGAGAGCAGCAGGTGGATTTACAGATgcctaaaataaaacatcaaagTGGATCCATGCGGATCAGCGCCTttGACTCGGTGTGTGTCCTATACTATGCCACGGAGTCCAACATCCAGTGAGGATGAAATGGCTCAGAGCTTTTCTGATTATTCTGACGAGTCCATGTCCGGGAGCTCTAAAGAGGACACCATCTATGAGAGTATAAGAGTGCCGGCTGAGAGGCCGCTGAGCTTCATGGAGGACGTTCAGAGCAACGCAGTTGTCATCAGGGTCATTATTCCAGATCTGCAGCAGACgAAATGTATGAGGTTTGATGTGGAATCGACGGTCTGGGCGGTGAAGCAGCGGATCCTTTGTACTTTGAGTCAGAGCTTAAAGGACGTGCTGAACTATGGCCTATTCCAGCCAGCAAATAATGGCCAAGATGGAAAGTTCCTGGATGAAGAACGTCTGCTCAGTGAATATCCACAAGCAACTAGCAAAAACATCCCAACCCTGGAGTTTCGGTATAAAAGCAGAGTATACAAACAACCCAATGTAGACGAGAAGCAAATTGCCAAATTACATACCAAGGCCAATCTGAGGAAGTTTATGGATTACATCCAAAATCACCAGTCAGAGAAAATCTCTAAAATGTTGGATAAAGGACTTGATCCAAACTACCACGATTCAGAAACAGGAGAGACGCCACTGACGTCTGCTGCTCGCCTGGAGAACATGGTTGACATCATTAAGGTGCTAAAGAACGGAGGAGCTCATCTGGACTTCAGAGCTAAAGACGGCATGACAGCCCTACACCGAGCAGCTCGCGCTAACAACAAGCACACACTAATGACTCTGCTGGATTTGGGGGCGTCACCAGATTATAAGGACAGTCGTGGTTTGTCGGCACTCTATCACACAGCCATGGTGGGCGGAGACTCAGGCTGCTGCGAGCTCCTTCTCCACGAGCACGCCAGCATCAGCTGCCAGGATGAGAACGGCTGGCATGAAGTTCATcagGCTTGTCGACATGGTCATGTCCAGCATCTTGAGCATCTCCTGTTTTACGGAGCTGATATGAGTGCCCAGAATGCATCAGGAAACACAGCAATGCACATCTGTGCTCTCTACAACCAGGATAAATGTGCTCGTGTGCTGCTTGTTCGGGGAGCTGATAAGGAGGTGAAGAACTACAACAGCCAAACTCCATTTCAGGTGGCCATCATCGCAGGAAATTTTGAGCTTGCTGAGCTGATCAAGAACCACAGAGAGAGTGACGTAGtgCCTTTCGTTGAGGCTCCCTCATACTCCAGGAGACGTCGTGCTCCTCATCATTTGGTGCCTCCACGTGTGCTGCTGCGCTCCAATAGTGAAAACCACCTCCAACTACATCCCCAACAAACAACCACACagctacacatacacaccagccCTAACGGCACAGTGAGTACCAGAGCCCCACCACGCAGCCGCTCGCCCTCACTCAGCCGCCTGGGAGAGGAGCAGCATAGACTACAGcacagAGCGAATACAAGTCTTGATGGTTCGGGGTCAAGAAGGAAGCTGTATAGTGCCGTCCCCGGTCGCCATTTTGTCGCAGTGCGACCCTATCAGCCTCAGGCAGAGGGAGAAATCACACTGTATAAAAATgacagggtcaaagTTCTCAGTATTGGTGAAGGTGGCTACTGGGAAGGCAGCGCTCGCGGCCGTGTCGGCTGGTTTCCAGCTAATTGTTTGGAAGAAATTCCTGCCAAAACAAACGAGGACAGACCACagAGCCGAATAGATCGGACAGATAAAAAGAAGCTATTCAGGCATTACACCGTGGGATCATATGACAGCTTTGATGCCTCCAGCGACTGCGCCATCGATGAAAAGACCGTGGTGCTGCACAAGAAGGAGAACGAGGGATTCGGCTTCGTGCTGAGAGGAGCGAAAGCGGACACACCCATCGAGGAGTTTACACCTACTCCTGCTTTTCCTGCCCTTCAGTATCTGGAGTCAGTGGATGAGGGTGGAGTTGCATGGGAGGCGGGGCTTCGGACCGGTGACTTCCTCATTGAGgtgAACCAGGAGAACGTGGTGAAGGTGGGTCACAGGCAGGTGGTCAACATGATACGACAGGGTGGAAACAGACTCGTCATTAAAGTGGTGACGGTCACCAGGAACCTGGACAATGATGACAATGCAAGGAAGAAAGCCCCGCCTCCTCCGAAGCGAGCACCAACCACAGCACTGTCCATGCGCTCCAAATCTATGACATCAGAACTGGAGGACAtggTGGATAAAGATAAAGTGGACGAAGTGCCTCCGTCCCAGAAAAACGCAAGGGACAACGGCTCAGCGGACATGAGAGTGGCCACCATTAAGCCTCGCCCCTCCAGCCGCTGCTTGGTCACGCCTACTGATTTCAATGCCATGTATGAACGGCAAGGTGTAGCTGTCGTTCCTCCCACCGTTCCTAGCGGCCCACAAGGAGCATACTTGGGTATACCAAAGGGAACAATGAAGAGACAGAAGTCCATTGGTATTACGGAAGAGGAAAAGCAGTTCCTGACTCCTCCATTGCTAAAGTTCACACGGAGCCTTTCAATGCCTGATACATCAGAAGACATTCCACCTCCACCTGGCATCTCCCCTCCATCACCCCCTTTTAGCCCCAGTGCCCCCAATAGCCGAGGCTATAGTAACAACCAGCCTGGCTTTATGCAACCCCAAGCAGGCAGAGGGTATGGAAATACAAACACCATCAACAGAGGTCGAGGTGGTTTCCTGCGACAGAACTTAGACCAGTACGACCCTTCAAACTCCATATCAAACCAGCACAATTCCCGAAATCGAAACAGGGCCTCAGTCCCTGAGAACCCATATTCGGAAGTAGGAAATAAGGCACCTTATGTCCCAGCCAAGCCAGCACGCAGGAAAGGGATGTTAGTAAAGCAGCCAAATGTGGAAGATAGTCCCGAGAAGACCTGCTCCATTCCGATCCCCACTATCATTGTCAAAGAACCATCCACTAGCAGCAGTGGAAAAAGTAGCCAGGGAAGCAGCATGGAGATTGAGACAAGCACTCTAGATCATCCAGGCCAGCTGAGACCTGAGGATACACTCAGTGTAAATAATCCTTTTGCAGCTGCTATTGCTGGGGCGGTAAGAGATCGAGAAAAGAGGCTGGAAGCACGTAGGAACTCCCCCGCATTTATTTCCACAGATTTGGGGGATGAGGATTTACCAATGCCCACTCCAACCCCTCGTTTGCGCCAGTCAAAGTCCATTGATGAAGGAATGTTTGCAAATGATGAAGGGCTTCGGACACTCATGGCACCACCTGCTTCACTTCTTACTGCTTCACAAGGAGCTGGAGGTGAGAGTGAAGAAGGTGGAGGAAGTGAGAGTGGTAGTGGGGGCAATGTGACAGACTTTAACACCCCTGAACCTGTGATTGTACGTGAACCTCTGAACACACGAACAAGGAACTGCCCTGATCTGGATAGTCCAGTCAGCCTTCCAGCAACAATAAAGACCTATAGCACCAATGGTGAAGGATACCTACACCCGGTTACAGGTAAAGCTCTTGATCCCAACTCCCCATTAGCTTTGGCTCTGGCAGCCCGAGACAGAGCTATTAAAGAGCAAGCACAACCTCCTCCACCTCCCCCAAAGGTGGAGCCTCACAAACCAGATATCAATCAACCCCTGTTTATTGATACCAAGCTTCGCTCAGGCATTGAGGCCAAATTTGCTGCCTCTGTTTGTACAGGCCGGTCTGGTCTTCGGAGGCAGTTGACAGAGGCTAAATATGAAGCAGAAGGTACAAAAGATAGCAAGCAAGtagaggaaaagaagaacatGGTGATTGACATTGTAGATACATCACAGCAGAAGCCAGCAGGATTGTTGATGGTGCACACAGTGGATGGAGTGAAGGTGgaagaaaataatgtaaatgatgaaGGGAAAGAGGAAATGGCACCTCAACAGGACACAGAACTAAGAGACTCAGATTCCAAGCCGCCTTCAGCTCCCAACCCCCAGACACCTGCCCCAGCCAGAACAAAAAGTATCACAGCAGGTGGATCAGTGGATGAGCCTATCAAACTGCCTTTCCGAATTCCCCCTCCACCACTGGCCTCAGTCGATATTGATGAGGaatttgtgtttgctgaaccTTTACCACCTCCTTTGGAGTTTGCCAACAGTATTGACATTCCTGAAGACCAGGTAGCAGAGATTCTTAAGCAGAGGAAAAACAGTATACCAGGGGGACCTTTGCCTCCATACCACCCCCATGCTCCTCCACCCATCAATGCAGAACTGAAACGTCCTGGGATTTTAAACTGCATTCCCCCTTCCAGCTACCCTCCACCACCTTCTGAGAGCTTTGAGCCAATCACGGACTCTGGAATAGAAATGGATAGCCGAAGTAGCGGAGACCCCCACCTAGAAACCACCAGCACCATCTCTACCGTGTCCAGCATCTCAACACTGTCTTCAGAAGGCAGTGAGGCTTTGGACACCTGCACAGTCTATGCAGACGGGCAGGTCTTCCTGGTGGACCGACCCCCTGTGCCGCCCAAGCCAAAAATGAAGCCCATCATCAACAAGAGCAATGCACTTTACAGGGACCCCTTGATTGAGGAAAGTCCCGAATCCTTCAATCAACCCCCACCTGCACCTCCTCCACTACAATCAGAGCCCCCCAAAACACCCACACAGCGAGCTTCTAAGCTTTGGAGGGAACCTCCTGAGCTCCGCAGCCCCCCCTCATCTAATCCGGATCCTAAGGCAAATGTTATTAGTGAGCTGAGCTCCATCCTGCAGCACATGAATAGGGAAAAATCCCCAAAGCAGGGTGATTCCCTTGATTCTCCAACAGGacccaggagctttacaaacaGgGATTCTGCCATTCCCTCTGTCTCAGGTACCCAGCGCTCCACTGCTCTAACGTTCACCACTCCATCCActcctccctccatccttccttcTGTCACCTCCCCTCCTTCATCAAGTCCCACACCCTCCACACCAGGCCCTGCTTCTTCTCCGGTACCGACCCCACCTCTTTGCCCATTTGGAAGCCGCTCAGCgtctcctctctcactcttgcATTCGTCCTCCTCATCCTCGTCTTCATCCAACTCCAAGCCGTTCTCCAGCAAGCCTGTCCTGCTGTGGTCCAAGCACGACGTCGCTGACTGGCTGGAGAGCCTCAACATGGCCGAACACAGAGACGCCTTCATGGAGAACGAGATCGAGGGATCTCACCTGCCAAACCTGCAAAAAGACGACCTCATCGATTTAGGAGTGACACGCGTTGGCCATCGCATGAACATCGAGAGGGCTCTTAAGCTGCTGATGGACAGATAAAGCAAAGACGAGTGCACTTTTTCTTCCCTTGCCTTCTGTCTCTCCCTACACAAATGCTGAGCAGGAAGGACTATCAGTAAGGACACTCTCGCTTTTCACACGTCCTTCCCAAgcgtgtgaacgagtgtgtgagttaaaaaaaaaaaaacaaaaaacttctgATTCATTTGGGACCACTCAGACTTTTTCAGATCGCCAGCTGAGCTGGAGGCTTTTTTCTATCtttgctagaaaaaaaatatttcatcactATAAAAATGTCCGGCGGTTAACTTTATGGatgcagcaaacacacactggaacAAAAAGACGTGTCAGATTGTCAGgttgtgttctttctttttcctttcttcacttctgtgtgtgtatgtgtgaatgagacCCAAGCCAAAAATGGAAGGACAGTCTGTCTACAGACTGCAGAGCCGTGGTTGTTAGCGCTAAAGAATATAAACATATGacataaatagaaatataactCAGAAATTCTGTCATAAGTTCTTTCAGAATTTCTAGCTTCCTAGTGTTAGGAATGCAGatgtgatcatttatttatttacaaatattactTCAAAATTTGgttaaaatcctgtcaggttagttagctggctaacaaGAAACATGTGCATATACGAAAGCCAATGACcttcttcttcctgtttcaAGACTTCCATGACACACCTTCTTTTTTCATACACAAGCTCAACAACACTGGTGGTCTGTGATCTGCAGACAACCTTGAGAAACCGTCTCAGCTGGGCATGAGCCGATATTCGAGTTTTCAGTATCGCGATAATCAGGACAAACATTTCATTATGGTTTATAATCTTACCActatattgtttttaatgttacacTGCTAAATTGTTATTCCCCAGTCCTGCCAGCTATGgctggtgaacagaattatgcgATTATATTCTTCAACACAGTGCTCTTAGAAGACATCTATCCTCATGCTGCTTTCTGAAAGGGACATTAAGTACTTCATCGCCAAACATGCTGAGTATCTCCTGAATGGAGCACAGGAGTCATGATGATATGTGCTGAATATCGTGATAACTGACATCGGCACATGCCTagtcacagctacacacacacacacacacacacacacacacacacacacacacttatagacCTGTCATATCAGGACAGGATAACCAGTGTAGCAGCCCCTCCTCTGTGTATGGGTGtgggtatgtatgtatgtgtgtgtgtgtgtgtgtgtgcgcgcgcgtgtgtgtatgtgtgtgtttgtccctTTTTTCCTTCTCGTCTTCCTTGTGACTGAAGGGTGGATTTATCCATTTATCAGCTCAGAATAACTCAAAATCAAGTGTGCcactactcttttttttccaaacagacTCTCTCATTTATAATCATGCTATCGCAATAGATTTCTAGAATTGTAGCCGTCtgcattatttatttccatgtatGAGGTACGAGATGATCCCCCTACTACTGTCTTTGTCCATGTCTCTCActtttcttcctccttcctttctctttctctatcagTTTCCCACCCCTATTTTtgccttctctccttctctccctttctttctcttcacaatttcttttcatctcttttctttctctcagttttCCTCTCATGTCTCTCACTCCACATCTCTGATTTTCTGCATTctttcgttcattcattcattgttacATGCTTAGGAAAATGGCTCTTCAAGGGGTTCTCTTGAAGCAACCCTTTCTGATAGCAAATACTCAAGCTGTTGtgggtttttgtgtgtaaaacctTTAAAAGTTCCCCCAaaaggacaaccaaagaacctgAACATCTGAACATTTAAAGAGTGTGATGCTGGTCAAACATAAAACATCAAATTAAAGCACTTAGAATACTTAAAATTCAGTTGTAACAAAAACAACGCACACTGTGCCGATCCACAAAATGAAGTTATATCATTAAATTATCCcattttattataacaaatatgCCCTCATGTCTTAAGATGTCTTAACTGATATTTCATCCATTAAGCAGTGacttctcttctgttctctttcATAATCTTTTTACACATCGTTTTCCAGCTTCCAGCGTTGCATAAGTGAGAAGACACTCTTTCTTATTGCTGTATTTCTCCATCTTTTCTTTCccatttttattgtctttactttctttctgtcttttcttaaTCACTcctttacttttttcccctcatttatGTCTTACTCCATCTCTCtagtcttttctttcttccttccttaaTATAAGCCTAACCTGCCATAAAAGCATTGCTCCAGATTATCCATACAGATTATATTTTTAGAACTGTAAAGTGACCTTGCGTATGAGAAAGGCAGAGTATAAATAGAAAGATTTATCACTGtcattattataaacaaatttattgtTAATCAGGAACATTATAGgggatttttgtgattttatattttgaacAATGTGACCATAGttactgtaaaacaaaatattttatccatttataaaaatacataactagtgcaaaagttttaaCTCCTACTTATGAGTAgacgtgctgatattcagtccTCATATCACCGATTATCACCTATAGTCTTCTCACAGACAAAGAATGAGAGGAATAAGAGAGAGGTTGAGAAATACAGAAAGTGGAGAGCACAGGGTGAGAGGAAGAAAGACGGGGTGGGAGGAGAAGAAAGGTGGGAAATACATGaagtggaagagagagaaggagaaacatGGGGAGAAAGAGCTGGAGAAAGACATGAAATGAGAAGAGAATGGTGGAAAAATTCACAATatactgggggaaaaaagatagggagaaagaatgagacagaaaaatagATACGGGAGGTTAGATAAACGCGTGTGGCGAAAaagcagaagagagagaaagaaggtaTGGAAAGGAGTGTGAGACCGTGACATAgcctttatttctttattaaaaacgTTGCCTACTTAGGCAGATTTCTCCAGACTCAGAACAAATGACAGTGATTATGaagtgttcatttttatttcattcagtgtttttaggttgatttttattttgattctaaacattcctTCACTTTATTCCATCCCAGTAATATTttaacaagtgtgtgtttgtgtgtgaattttcAGATGGaccatgaatgaatgattttagaGATCTActatggattattattattattattattattattattattaatattattattattattattatttgttggGAGTGGAAAGGAAACTTGCTGCCCAAGTCACGCTGCTTTGTGTCGACCCTTTTTAAATagagattattttacaatagAGTACGACAGCAAAAACCTAAAGCAcagtatttttaatgatttctaTAGAAATGTATGGAATTTTATAAAGTTATGGGACTGAAATGGTGCAGTTTGCCAAATTGtgttttagaaatatttaaatgagatgaaatatgtacatttatCTGATTCCTTAAGAagcaatatttatatttatgaatctCCTTGGTTGTGAGTTTCACCAATACATCCTGAAATCTGTGACTGTAAGATCTAAAGATACATATTTTATGATTTTGGAGGTAAAATAGTCTACATTACTAAATCATAACGGTTGAGTTTCTGTAAAATATGTGTATACCTGacatgctgtaaatgtatacaCAGGCCACGTCTACACTCTCTATATAAAGCTATTTAGCAATGGAAAATGTGACACAACATTCACTGAGTGTGAAAATGTAGATTAAAGTAGTAGTTGAATTAAATGAAACGCTGAACTTCACCGTCAGGCCTCACATACCCaacattcagcttttttttttttttttttttttttaatagataagCCTTTTAGCCTCACTctatttttgtgtgttcatgttcttTACGTTGCTGTAATTTTGTGCAGATCCTCTTATTTAGAAagtaacaaaattattattaaaatgtcaaaaagaTCAATTCCTGCgactgcttttttccccctggcCAAAATGTTTCATGTATGGATACCAAAACTAACTACAAGAAATAAATATAGCATTTATAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121596 lncRNA upstream 145997 21149084 ~ 21194404 (+) True G102703
TU121459 lncRNA upstream 335680 21004336 ~ 21004721 (+) True G102585
TU121214 lncRNA upstream 389410 20939413 ~ 20950991 (+) False prx
TU121238 lncRNA upstream 406307 20930187 ~ 20934094 (+) True G102415
TU121205 lncRNA upstream 491063 20847774 ~ 20849338 (+) False irf2bp1
TU121821 lncRNA downstream 41312 21504744 ~ 21505622 (+) True G102903
TU122075 lncRNA downstream 585742 22049174 ~ 22049382 (+) True G103130
TU122086 lncRNA downstream 664937 22128369 ~ 22170834 (+) True G103140
TU122206 lncRNA downstream 1062943 22526375 ~ 22526736 (+) True G103246
TU122232 lncRNA downstream 1228660 22692092 ~ 22692310 (+) True G103270
XM_026913717.2 mRNA upstream 15134 21318185 ~ 21325267 (+) True LOC113526557
XM_026914163.2 mRNA upstream 28895 21255064 ~ 21311506 (+) False LOC113526806
XM_034305267.1 mRNA downstream 127194 21590626 ~ 21618336 (+) False golim4a
XM_034305271.1 mRNA downstream 127194 21590626 ~ 21618336 (+) False golim4a
XM_034305264.1 mRNA downstream 127195 21590627 ~ 21618336 (+) True golim4a
XM_034305268.1 mRNA downstream 127195 21590627 ~ 21618336 (+) False golim4a
XM_034305270.1 mRNA downstream 127195 21590627 ~ 21618336 (+) False golim4a
XR_003402807.2 other upstream 242560 21026027 ~ 21097841 (+) False LOC113526807
TU120293 other upstream 2216524 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 2219275 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 2546128 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 2600403 18738343 ~ 18739998 (+) True G101434
TU122021 other downstream 323684 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 1489245 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 1699675 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 1808626 23272058 ~ 23272208 (+) True LOC113527010
XR_003402831.1 other downstream 1809876 23273308 ~ 23273458 (+) True LOC113527009

Expression Profile