RNA id: XM_026913861.2


Basic Information

Item Value
RNA id XM_026913861.2
length 2226
RNA type mRNA
GC content 0.44
exon number 4
gene id six9
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24462826 ~ 24467476 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAATACTGGAGAAAATCATCAGCAAATTTGCTCAAAAtgattttacattacaaaaaacaGAATTCTACCTGATTTTTAACCAAATATAGTaactggatgattttttttaaagaattgtaTTGTATTCTGGTGCATATGTTTATGGGAAAAATAGTTTTGGGTGAGATGGATGGTTTCACTGAAAAATTAAAGGCACAAACATTAGATGACTGATTTGTAGAAGTGGAAAATTGTACAaatgagaaattttttttttgccaaactttAACGGTTAATCAAGAGCCCAGCAATGGTTCTTGATTGTGTGAGGGTCTTAGTTAATCAGTGTTTTAGTTAATCACCCTTTCTTCACAGATTTTAAAAGGACTATGTCAAATCTGCTGTCTTAGTGCAAAGACcacatttttcaggtgcacATTTGGAGGCAAATGACGTCCATCCCTCTGGCATTCATTACATGTACGCCATGCAGGAGTCATCACTAACCAAATCGGCTTAAACGTTGGTACCCTAATTTGAGTTGGAAATAGGAATGCattcaaatgtaaatgtgtttattttcgATATGTCCCTCACTATTTAAGATATCAGCAAGGCTCCAGGTTAAcaggtttgttttgatttgtgcGTGCATGACTCaaatgcaaagtgtgtgttagtgcttgTCAATGTTTTCTTAACCCACATGGGCTCCGGTTACCTGTGTGTACTTCATCGTGGGCGGATCTGCTCAGGAAAGAACAGGCATAAGTGTGTGAAGCCTCATATGCTTGGATACACTCTCAGTTCTCAGCTTGGCAGGACTTTTATGAGAAACACAAAGGACTACAATGCGATTGACACCTTTCTCTTGAAACCAAACTGAAGGCCATCCTGAGAGAAGACTTTTTACCATGGCAATGGGTTTTTCCCAGGACCaggtggcgtgtgtgtgtgaagttcttCTTCAGAGTGGGTGTATTGACCGCCTATCATCCTTCCTTCGTTCTGTACCTTCTCTCTCCACATACTCTACGTCCTCGTACCTGGGCCCACAGCACAGTGTGGAGAGCGTGTTGAAGGCACGGGCAGCTGTGGCCTTCCACCAGGGTCGGTTCAGCGAGCTCTACGCTCTCATCGAGGGCAACATGTTCTCCCCACGCAGTCACTCACTTCTCCAGCAGCTCTGGCTCCGGGCACGCTACCTGGAGGCTGAGCTGCAGCGAGGGCGCCCTCTTGGAGCTGTGGGCAAATACCGCATACGGCGTAAGTTCCCCCTGCCTCGAACCATCTGGGATGGAGAAGAGACAAGCTACTGCTTCAAGGAGAAGTCCCGGTGTGTGCTGAGAGAGTGGTACTGCAGGAAGCCCTACCCCTCACCCAGAGAGAAGCGGGATTTAGCCACAGCAACTGGTCTCACAGCCACTCAGGTCAGCAACTGGTTCAAGAACCGCCGTCAGCGGGACAGAGCTGCTCAGGGCCGCAAAGGGCAAATGGAGGATGCTGTGCCAGAGTGCTTGGGCTCAGACGACACTAGAGGTTCACTCCACAGGTCTGACGATGACCTTTCACCTCCACCTAGCCCCAACTCAAGAGGAGAACTGTTGCCCTGCTCTCAGCTCTCCTCAGCTCAGCCTCCACCTCTCAGGCACCTGGGAGCTGTGCACTACTTTCCCTACTGAGGCGACTTGAGCCTTCAGTGCAGACTAAACACTGTGAGCTGGAGAATGAGACAGTGAGCTGGAGAATGAACATGGACAGACAGCTACTGCCCCCCAGTGATGAAAAAGCAGAATTCCCTCACTCTGAGTAGTCTGTTGGATACACTTGTACATGCCTTATCAAAAAGACATAAAGAAAGTGTCTTATTATGCTACAGGAAATTGCTACAtgtttcaaaatattaatttcctCCTTATCTACTTGTATTTTGTAACAAACCACATTTACTTTATATTCCAGGACCGTAAAATGTTTTTGCCCTCAAGAAGGTGGTGTAACTTCTGCAGCAAACTGATGTATATGTATTTCACTTCCTCTGTTACTTTTACTTAGCTACCATTTTGTtactttataaagaaaaaaaatatgttgtctTTACAATTGTCTATTTTAGGCATTCTTTTCAGTATATAGTGCACTGCACTGGTTTTACAATGACATTATgttacaccctatgtagtgagcatatgtagtgaataggaagccatttggccTGAGGCAGAGGagcttaattaaaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122944 lncRNA upstream 708571 23749063 ~ 23754260 (+) True G103896
TU122937 lncRNA upstream 720516 23739688 ~ 23742315 (+) False cstf3
TU122936 lncRNA upstream 720571 23739651 ~ 23742260 (+) False cstf3
TU122932 lncRNA upstream 724078 23729878 ~ 23738753 (+) False G103889
TU123375 lncRNA downstream 12889 24480365 ~ 24484022 (+) False G104257
TU123377 lncRNA downstream 12889 24480365 ~ 24484096 (+) True G104257
TU123404 lncRNA downstream 97156 24564632 ~ 24571887 (+) True G104284
TU123458 lncRNA downstream 108016 24575492 ~ 24634405 (+) True G104325
TU123569 lncRNA downstream 295166 24762642 ~ 24764112 (+) True G104429
XM_026914032.2 mRNA upstream 1128 24448341 ~ 24461703 (+) True six5
XM_026914057.2 mRNA upstream 35703 24392298 ~ 24427128 (+) True yap1
XM_034305054.1 mRNA upstream 35703 24394292 ~ 24427128 (+) False yap1
XM_034305021.1 mRNA upstream 78388 24373053 ~ 24384443 (+) False cep126
XM_034305019.1 mRNA upstream 79212 24368079 ~ 24383619 (+) False cep126
XM_026913981.2 mRNA downstream 114728 24582204 ~ 24627029 (+) True map3k10
XM_034305013.1 mRNA downstream 524306 24991782 ~ 25011741 (+) True b3gat1a
XM_026913405.2 mRNA downstream 524306 24991782 ~ 25011741 (+) False b3gat1a
XM_026913987.2 mRNA downstream 568037 25035513 ~ 25038677 (+) True exosc5
XM_026913986.2 mRNA downstream 568041 25035517 ~ 25040089 (+) False exosc5
TU122935 other upstream 720516 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 833108 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 1188322 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 1189373 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 1190623 23272058 ~ 23272208 (+) True LOC113527010
TU123976 other downstream 827423 25294899 ~ 25306811 (+) True G104781
TU123982 other downstream 827423 25294899 ~ 25315213 (+) False G104781
TU124829 other downstream 2363502 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 2743913 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 3091360 27558836 ~ 27558946 (+) True trnal-caa_8

Expression Profile