RNA id: XM_026913943.2


Basic Information

Item Value
RNA id XM_026913943.2
length 1608
RNA type mRNA
GC content 0.48
exon number 9
gene id syt1b
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30733459 ~ 30738572 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCATCACTGTAATCTTTTCCTCTTTGACTCCAGCAGTAATGCAGATCTGACCATCAGACTctgattaaatcattaaatcctGAGCTGAGACACTCACAGGGAAACAGAATGCATGAGAGTGATATGGATCCGGGATCTACCACACCTGTGCAGAAGCTAAATACCTCTGTGGCTCTCACACCTactgaagctccgcccactcagGCTCCACCCCAAAACTCACCTGGAGAACTAATGATCTCCACCAGAAACAAACTTCTGAATGAACTTCACAAAGTTCACTTTCCCTCCTGGGCTTTAGTGGCGCTGGGCTTCatcctgctcctcctcgctctcagctgctgcttctgcatCTGCAGGAAGTTTGTgtttaagaagaaaaaggagaaaccAGGGAAAGAGAAGAGCAGAAAGGACAGCATCGGCATGTCCACTGTGAGAGATGAAGGCATCACGCAGgttcCGCATCATGATCCCAAACCTCAGGAGAAACAGACGGAGAGTAAAGAGGACGTGAATCTGGGAAAACTTCACTTCAGTCTCGACTACAACTTCACTGACAGCACGCTCATTGTAGGAGTGATTCAGGCAGAAGATCTGGCTGCCATGGACATGAGCGGGACTTCAGACCCATACGTGAAGCTCTGTCTCCTCccagacaagaagaaaaaatttGAGACCAAAATCCACAGAAAGACTCTGAACCCCACCTTCAATGAGCGCTTCACTTTTAAGGTTCCGTACGCAGAGCTGGGAGGAAAGACTCTGCTCATGACCGTGTATGACTTTGATCGTTTCTCCAAACACGACGCCATTGGAGCTGTAAGGGTGCCGATGAACCGCGTCGATTTCAGTCATGTGACCGAGGAATGGCGAGAACTGCAGAAGGCGGAACACGAAGAGCAGGAGAAGTTAGGTGACGTCTGTCTGTCCCTGCGCTACGTCCCCACTGCCGGGAAACTCACCATCGTCATCCTGGAGGCCAAAAACCTCAAGAAAATGGATGTAGGCGGTCTCTCAGATCCTTATGTGAAGATCCATCTGATGCAGAACGGCAAaagactgaagaagaagaagacgacgataaagaaaaaaaccctgaatcCATATTACAACGAATCGTTCAGCTTTGAGGTTTCATCTGAACAAATTCAGAACGTTCAGATCATAGTGACCGTCCTGGACTATGATAAGATCGGTAAGAACGACACCATCGGGAAGATCCTGGTGGGAATGAAGAGCTCGGGGACGGAGCAGCGGCACTGGGAGGACATGCTGGCCAGTCCGAGGAGACCCATCGCTCAGTGGCACGCTCTCAGACCTGACGAAGAAGTGGACGCCGAGCTCAAAACGAAATGACGCTTCATATTCCAGTGAGAATCAGCAGGAGCGTGATCATTTATCTGTAACGCAAAGCTCAGCTCTGAATTTTATCCAAGTTTATTGCGTAgatttaatgattaatgaaatGTGACGAAGTCAGTGATGGAATTCTGTCGTTTCAGTCAGTCAGAGAaataagagtcgactcctaAACGACTCCCTGCTGTTCTGTTTTTCCCCAAAACTTGTTCATCTGTTGCTTAAATTGTTCAATAAAATCTTCC

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127204 lncRNA upstream 3802 30728834 ~ 30729657 (+) True G107629
TU127154 lncRNA upstream 170558 30557623 ~ 30562901 (+) True G107591
TU126897 lncRNA upstream 235144 30394495 ~ 30498315 (+) False dnaja2b
XR_003402817.2 lncRNA downstream 89504 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA downstream 89528 30828100 ~ 30829657 (+) False LOC113526871
TU127254 lncRNA downstream 109387 30847959 ~ 30848474 (+) True G107657
TU127256 lncRNA downstream 111969 30850541 ~ 30854105 (+) True G107658
TU127258 lncRNA downstream 116041 30854613 ~ 30859896 (+) False G107659
XM_026913947.2 mRNA upstream 5504 30720852 ~ 30727955 (+) True si:dkey-30c15.17
XM_026913945.2 mRNA upstream 15313 30711776 ~ 30718146 (+) True glipr1b
XM_026913946.2 mRNA upstream 15313 30711776 ~ 30718146 (+) False glipr1b
XM_026913944.2 mRNA upstream 15716 30711773 ~ 30717743 (+) False glipr1b
XM_034305309.1 mRNA upstream 15716 30711778 ~ 30717743 (+) False glipr1b
XM_034305095.1 mRNA downstream 21613 30760185 ~ 30774967 (+) False terb1
XM_034305094.1 mRNA downstream 21805 30760377 ~ 30774967 (+) False terb1
XM_034305096.1 mRNA downstream 21810 30760382 ~ 30774967 (+) False terb1
XM_034305099.1 mRNA downstream 21811 30760383 ~ 30795802 (+) False terb1
XM_034305102.1 mRNA downstream 21811 30760383 ~ 30795794 (+) False terb1
XR_004578358.1 other upstream 2571590 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2571590 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2571590 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2662774 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2771688 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile