RNA id: XM_026913946.2


Basic Information

Item Value
RNA id XM_026913946.2
length 1260
RNA type mRNA
GC content 0.50
exon number 5
gene id glipr1b
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30711773 ~ 30718146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTATGGCTTGCCCACAGCACGACGCGCGCGCGACTCATCAGTACTCGCTGTACTCAGGCTGCATTaatgctctcacacactctctcacacactcacacactctcacacacattaacacactcacacacactctctcacacactctctcacacattaacacactctctcattctctcacacactctctcacacactcctcagtcCGGGAGAATCTCAGCCTGTTCTCTCTGATCATGGATCTGCTCACCTGTACGCTCCTGTGGATCTCTGCCCTCCTGTCCGGTCCTTCCGGTGCGCGCGCGTTCATGCTGCCGGACATCAGCGAGCCCGAGTTCATCCGCAGGTGCGTGCAGGCGCATAACGTGCACCGCTCACGAGCTCAGCCGCCCGCCGCCAACATGCGCTCCATGTCCTGGGATGATTCACTGGCGAGAGGTGCTCGGTCCTGGGCGAGACATTGCAGGGCATCCCATAATCCTGTGCTGAAGCAGGAGGGCAAGGCCCACCCGGCGTTCCGGCATGTCGGAGAGAACATCTGGCTCGGAGCTCCGTACTCAGCCTTTACAGTCGAGTCAGCAGTCAACAGCTGGAACAAAGAGGGTGCTGATTACACACTTGCAAACAACAGCTGTGCCAGACTGTGTGGACATTATACACAGTTGATGTGGGCGACGAGTTATAAAGTCGGCTGTGCCGTCCACGTCTGTTCCAGAGGAATTGAAAACTTCTCCAAACATCCCGAGTCGACCATTTTTGTGTGTAACTATGGTGACGCTGGGAACGTGTTCGGGTTCACGCCGTATATCGTGGGTCTGGCCTGCAGCAAGTGCGGCATGGAGAAATGCAGGGACAAGCTTTGCAGATATGACTGGGTGCCGGGGTGGGATCTCGGCCCCAGCGGTTCAGCTCAGGCgatctctgattggctgaacgGCTCTAAACTGCAGCTCCTGGCTGGATCGTTCTGGCTTCTTTACTTTTATGCAATGCACTGAAATCACTCAATAAACCGAATTCCATTTTAATCAAGACTTAGATCAAtgcgattattattattattattattattattattattttatttcgaACCGTAACAGAGAGCTGACGTGGCGTAAATCCCTGCTGTGTAGGACTGGTGCTACCCTGCATCATATTCACATATACTGTCATATCATTATGATATTCTTATAAATAATCTTTTCACCTTTcatatgaatacatttaaaaaaaaataaacacaactccGTATATTTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127154 lncRNA upstream 148875 30557623 ~ 30562901 (+) True G107591
TU126897 lncRNA upstream 213461 30394495 ~ 30498315 (+) False dnaja2b
TU127204 lncRNA downstream 10688 30728834 ~ 30729657 (+) True G107629
XR_003402817.2 lncRNA downstream 109930 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA downstream 109954 30828100 ~ 30829657 (+) False LOC113526871
TU127254 lncRNA downstream 129813 30847959 ~ 30848474 (+) True G107657
TU127256 lncRNA downstream 132395 30850541 ~ 30854105 (+) True G107658
XM_034305022.1 mRNA upstream 12394 30689935 ~ 30699382 (+) True cers3b
XM_034305560.1 mRNA upstream 24057 30668276 ~ 30687719 (+) True LOC113526339
XM_034305561.1 mRNA upstream 24057 30668276 ~ 30687719 (+) False LOC113526339
XM_034305152.1 mRNA upstream 45051 30628412 ~ 30666725 (+) True vwf
XM_026913947.2 mRNA downstream 2706 30720852 ~ 30727955 (+) True si:dkey-30c15.17
XM_026913943.2 mRNA downstream 15313 30733459 ~ 30738572 (+) True syt1b
XM_034305095.1 mRNA downstream 42039 30760185 ~ 30774967 (+) False terb1
XM_034305094.1 mRNA downstream 42231 30760377 ~ 30774967 (+) False terb1
XM_034305096.1 mRNA downstream 42236 30760382 ~ 30774967 (+) False terb1
XR_004578358.1 other upstream 2549907 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2549907 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2549907 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2641091 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2750005 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile