RNA id: XM_026913947.2


Basic Information

Item Value
RNA id XM_026913947.2
length 2799
RNA type mRNA
GC content 0.49
exon number 8
gene id si:dkey-30c15.17
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30720852 ~ 30727955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagcatgtgtggGTAAAACACATCTCTGGGATTCATCTTCCATCAGCGTGAAATCAACTGGAGCTCATCATGGTTCGCTCATCGGTCGCTGGAGTAACCTTGCTCGTGCTGGTTTCCATGGCGACGCCAGACTTGGTGTGTGGGGGCCAAGAGAGAGGCAAGGACTCacgactcacacacactcatttcgcACATAATCAGTATTACACgcctcagactggaggagtgaGGAGCATGACTTTCCAAAAGACACCACGTAATGACATATTGGAGAATAATCACTACAGTGTGCAGATTTCTGAGGCTGAATTAGGTGACGTAAACCCTCGGCCTGAAAATAAACCTGCGATTAGAATTCCTAACTCTGCTCAGTTGCATATGGAACTCTCAGATGATAACGAGTGTAATGACATTAAGTGTAATGACTATGTAAGTGATGGAAAAGGTCGATCTGGTGTGGAGTTTAACAGAGTCACGTGGGATGAAGTGTCAGATGTTACGCCGAAGTCCACTGAAGTCCCtgccgtgcacacacacactgaaggccctgccgtgcacacacacactgaaggcCCTgtcgtgcacacacactccggtCCGGTTCGTGGACTGACGCTGGAAAAAGCTCATGTGTTTTATGGGATTCCGTACGCAGCCCCGCCAGTGGGCCCAAAACGGTGGGCCGCTCCTGAACCCGTGTCTCAGTGGACGAAGCCGTATGACGCCACGTTCCCTCGGCCGGCGTGCATGCAGGCTTGTGCGGGGGAATTCTCTGAAGAGTGTCCTCCTAAGGTGAGTGAGGACTGTCTGTACCTGAACGTGTATGTTCCTGTGAGTGTGGATCTCTCAGAGAAGACCGCTGCTCAGCTTCCTGTCATGGTGTGGATCCACGGAGGTGACTTCATCGCAGGCTCCGCCTCCAAACCGCTGTACGACGGACGCTTCATCAGTAACTATAGCAACACTGTGGTGGTAAACATGGAGTATCGCCTGGGAGCTTTTGGGTTCCTGGTGACGGGAAAAGATCCTGAGAGATCTGCAGTGGGAAATTACGGAATTCTGGATCAGCAGGCGGCACTACGCTGGGTCCAAAAGAACATCGCCGCATTTGGTGGAGACccagtgaaggtgactCTGTTTGGCGAGAGTGCTGGTGCtcagtcagtgtgtttacacCTGATGATGCAGAGCAGTGAAACTCTGTTCAGACACGCTACCATACAGAGTCAGCCTTTCTCCATCCCCCTCAAaaccagGTGGGATGCCATGAAGTTGGGCAGGAACTTTCTGATACATACGACTTGCTCAGCGTCTGACATGCAGTGTCTCCGCTCCCTCAGCACACACACCGTCCTGCAGGCCCAGGTTcaagcagGTTCTAAAATCATCAACCCGTTCCGCTTCCTGGAGGTGTTTGAGACGTGGGGGCCGTATGTGGATGGAGAACTGATCACGGAGCAGCCGATTGCAGCTTTCCAGAAGGGTCACTGGCAGAGTTATAAACCTGTTATAATGGGAACTACATCTGAAGAAGGCGTGATCTTTGTATATGGAGCTTTCAAtggctcagtgtcagtgctggaGTGTATAGTCTACACCACTGCCATCTTCAAGCAGCACACACTCAAAGTCCTACAGAAATACCTTCCCGTCTACCATAAAGTGGACAAACGGACGATGCTGTCTCAGATCGTCACGGATTTCGTCTTCCTGTGTCCGGCGCGATGCTCCGCTCGTGCAGCGCTGAGTATGGGCGGAGCCGTGTGGATGTATGTATTTGACCACGCCCCTTCGGATCACAAAATATGGGCGGGGCTGACTTTCTGTTACGATCACGCCTGCCATGGGGCGGAGCTCCCGTTCCTGTTCGACTCGGCTCCTGTGGCGAACTTCAGCTTCACGGCTCGGGAGAGTCGCCTGGCCAATCAGATGGTGTGTTACTGGGGGGCGTTCGCTCACTCCGGAGATCCGAACTCTCACAGAGAACACACATCTTTCTGCAGGAACCAGAGGCTCGCACCGTGGCCCAAATACACGCCTGCTCGGGGATGGCCAGTTCTGAACTTAACTCTGCAGTCTCACCTTCAGCGCGGAAACAGAGATCATTTCTGTGACTTCTGGGATCGTCTGGATATTTACTGACGGAGGAAGTGACGCAATAACTAATGACAGGATTGATTTATGAACCACAAGcctggaaaaatatatatataattgaaaaATGTGCCttaattgtaatcatttttaGTCTCCTTGAGGAAAGTATATAAATTACTTAGCCGTTTGTTTTAAATCTGCATAACCTTTTAAAGTGTAAAAACTACACATTTATTAACGTTAGATTAATCTTATTGTAATCTTGAACAATTACACTAACTCTGACAAAACTAAGATAAaattcatttgtcttttttatagAATAAATTACTGTAGAATTAGTACTTTTATTAGTGTGGTGTTGAATATAAGTTGAAAATGAACACATCTTATTCAGCTAATAAACCTGCAGCACTCCCTCACTGTGTTTGGGattgtagtgtttgtgtgtttgtgtgtttacagtaagTCAGGGATCTGATTCCAGCCAAACAGGAGCCTGACAGCTGACAGCTGATTAGAGACGAAGATGAACTAATTAAACACGTGGAATCGGGTGTGACTCCTGCCTGCAGCCGCACCGACCCTCTGCGGAGAGACTGAAGACTCCTGCTTTAAgtggtcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggttattTGAGTGTTTGCGTGGC

Function

GO: NA

KEGG:

id description
K03929 pnbA; para-nitrobenzyl esterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127154 lncRNA upstream 157951 30557623 ~ 30562901 (+) True G107591
TU126897 lncRNA upstream 222537 30394495 ~ 30498315 (+) False dnaja2b
TU127204 lncRNA downstream 879 30728834 ~ 30729657 (+) True G107629
XR_003402817.2 lncRNA downstream 100121 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA downstream 100145 30828100 ~ 30829657 (+) False LOC113526871
TU127254 lncRNA downstream 120004 30847959 ~ 30848474 (+) True G107657
TU127256 lncRNA downstream 122586 30850541 ~ 30854105 (+) True G107658
XM_026913945.2 mRNA upstream 2706 30711776 ~ 30718146 (+) True glipr1b
XM_026913946.2 mRNA upstream 2706 30711776 ~ 30718146 (+) False glipr1b
XM_026913944.2 mRNA upstream 3109 30711773 ~ 30717743 (+) False glipr1b
XM_034305309.1 mRNA upstream 3109 30711778 ~ 30717743 (+) False glipr1b
XM_034305022.1 mRNA upstream 21470 30689935 ~ 30699382 (+) True cers3b
XM_026913943.2 mRNA downstream 5504 30733459 ~ 30738572 (+) True syt1b
XM_034305095.1 mRNA downstream 32230 30760185 ~ 30774967 (+) False terb1
XM_034305094.1 mRNA downstream 32422 30760377 ~ 30774967 (+) False terb1
XM_034305096.1 mRNA downstream 32427 30760382 ~ 30774967 (+) False terb1
XM_034305099.1 mRNA downstream 32428 30760383 ~ 30795802 (+) False terb1
XR_004578358.1 other upstream 2558983 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2558983 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2558983 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2650167 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2759081 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile