RNA id: XM_026913949.2


Basic Information

Item Value
RNA id XM_026913949.2
length 3722
RNA type mRNA
GC content 0.49
exon number 23
gene id prdm10
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19801828 ~ 19835429 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atatatatatatatacatattttatttatttaaaatatatatatatatatatatatataaaatcattacTCCGATTGGCGTTTGTTGCTAGGCAGATTATGTTAATGCGCGGCCATCTCTGCAGCTACCATTCCGAGACTTTTCCCATTTTAGTGTATGACCTGGCTGCTCGTTGGTGGCTGAGTGAGTGGGTGCAGTACAGGATTTGAGGCTGTCCTCAAAATATGGCCATGGAGGACCAGGAATCATCCTCTGTGTGGAATCAGAACCCCAGCAATGACGCCAACAATCCAGCTCAGGTGCATTTTGAGGGTGGAACGGTGGCTCAAATTGTGTACAGTGGAGAACAGCCAGACAGAGGACAGCAGCAGGTTGTGTACGCCGCGGATGGAAGTTCCTACACCTCAGTGGAGACTGCTGAACACACATTGGTGTACATACACCCTGCTGATGGAGCACAGGCTGTGTTTACGGACCAGCCCCAAGTGGCATACATTCAGCAGGATGGTACAACTCAACAGGTCACAGTGTTATTGCCAGGTGGCCAGAACATGAATGCTGCAAATCTACATGTGCTCAGTAATGTAGCAGATGCCCCTCAAGCTATACTAGAGCCTGTGTCACAGAATCAGCTGCCCAGTAGTACTCTCCCTACCATCACAGAGCCATCAGTCAGTCCCTTGGCAGCTACAGACTCTACTGTGGACTCtgaggatgaagaagatgatgatgaagataatAGAGATGATTCAGAACTGGATGATTGGGAACCCAGGCCACCTCAACCCTTCACACCTCAGCATCTCTggTGTGAGGAATGTAATAATGCCAACCCGGGCGTGTGCTTGAAGCATGGTCCTCTCTACCCAATTGTTAACAGACCTGTGATGTCCAAAGCTCGTGCTAGCCTTCCTCTCATTCTCTACATTGACCACTTCCAGGGAGGCGTCTTCTCCAAGAGGCGCATTCCCAAACGTACTCAGTTTGGACCCGTGGAGGGGCCACTGGTACCACAGAGTGAACTGCAGGACACCCACTTTCAGCTTAAGTTATGCATGTTGGACCCTCAAAAAGACAGCGAGAGTTCGGAGGACTTGTGGGTAAACCTGTCTGATGAAGATCGCTGTAACTGGATGATGTTTGTCCGTCCTGCTGAAAACCACCTGGAGCAGAACCTGGTGGCCTATCAGTATGGCTCAGACATCTTCTACACTACTATCAGAAACATTCCACCAAAACAGGAGCTTAAGGTCTGGTATGCTGCATCATATGCAGagtttgtgaataaaaaaattcacgAAATcacagaagaagagaggaaggTACTACGAGAGCAGGAGAAGAACTGGCCATGTTATGAGTGTAACAGGCGTTTCATGAGCTCAGAGCAGCTCCAACAACATCTTAACATGCATGATGACAAACTGGACCTCATACAAagGCCAAAAGCACGTAGGCGAGGAAGGGGCAGGAAAAGGTTCAGTACTGGAAGACGCCCAGGCAGACGACCTAAATTTATCCGTCTGGAAACTCCAGCAGAGGGTGCAGATAAAAGCCAGGACTTTCTGGCATTTTCAAAACTCCCTTATGAGGAACAGGCAGGAAGGGTTATGAACGGGTTGAAGGTGGATGAGTTGGGAGAAGATACTGTGGAAACTGCTACAAGTGGCACATTAGAGACCCGAGCAGGACAGACTGACACTCTAAATGACGCAAATGCTACTGAATCCCAAATCCCAGCTTCTAATGATTCACAGACTGATAAGGAGGACCAAAATGCATCAGTTTCTACTGATCCTCATCTCACTCCCCAGGACATGAGGCGTGCTCGGAGGATTCGGAATGCTGCCCTTCAGCACCTCTTCATTAGGAAGTCCTTCCGACCCTTCAAGTGCACACTTTGTGGAAAAGCCTTCCGGGAGAAGGATAAACTAGAACAACACATGCGCTACCACAGCCGGGAAGGCTGCCGATACACCTGCCACCAATGCAGCAAAGGCTTTTTGAGCAGTACGGTACTGGAGGAACACCTTCAAATGCACTTGGAGCAGCGCAACTACTCCTGCCTGTTTTGTGCCGAGTCCTATGATAGACTGGAGCTGCTCAAAGAGCATGTCAGTGTTCATTTGGTCAATGGCTGCTACTCTTGTCCATCCTGCAAGAAGACATTCACAGATTTCATACAGGTAAAGAAGCATGTGAGGAGCTTCCACTCAGAAAAGATATTCCAGTGTATGGAATGTGATAAAGCCTTCTGTCGTCCGGACAAGCTCCGGCTGCACATGCTGCGCCACTCTGATCGCAAAGACTTCCTGTGTTCAACCTGTGGCAAGCAGTTCAAGAGGAAAGATAAATTGCGGGAGCACATGCAGCGCATGCACAACCCAGAGCGCGAGGCCAAGAAAGCTGATCGCATCCACCGCACAAAGTCTCTCAAGCAAAAGGAGCCCACCACTGACTTTGAGAGCTTTATGTTTAAATGCCGGCTCTGCATGATGGGCTTCAGACGGAGAGGAATGCTGGTGAATCATCTGTCAAAGCGCCACCCTGAAATGCGAATAGATGAGGTCCCTGAGCTGACGCTTCCCATCATCAAGCCCAACAGAGATTACTTTTGTCAGTATTGTGATAAGGTTTATAAGAGTGCAAGTAAGCGCAAAGCTCACATCCTAAAGAATCACCCTGGTGAAGAATTACCACCCAGCATCCGGAAGCTGCGCCCAGCCAGGCCGGGTGAGCCAGACCCCATGCTGAGCACCCACACTCAGCTAACTGGCACCATTGCCACAGCCCCTGTCTGTTGCCCACACTGTGCAAAGCAGTATAGCAGTAAgACAAAGATGGTGCAGCACATCCGTAAAAAGCATCCAGAATATGCACAGCTAGCCAACAGCATCCAGGCTCCTTTAGCTACAACCGTCATTAACAGCACTCCAGCTGTCATCGCAACCGACGGTACTACAACTGAGGCTGTGGTGACAACAGACCTTTTGACACAGGCAATGACTGAGCTGTCTCAGACTCTGACTACAGACTACCGTACAGTGCAGGGAGACTTCCAGAGGATCCAGTATATACCCGTGACTCAGGCTGGTGGGGGTTTGGCCCAGCCGCAGCACATCCAATTGCAGGTGGTGCAGGTTGCTCCGCCATCAACTTCCCAGTCCCAGCACTCAACAGTGGATATGACCCAGCTGCAGGATCCTCATAGCTTTACTCAGCACTCCATTCAGGTGCAACACATCCAAGTTTCTGAAGCTGTGGGGACTGTGCAGGCCAGTGCACAGGTGACTGGCCAACCTTTAAGCCCTTCCTCTCAACAAGCAGCCCAGGAGTTAAATTCAGGTCGCCTACAAACATCGACCAGTCAAACACAAGGGACAGTGCAGCATGCTTACTTGCCTAGCAACTGGAACTATCGGAGTTACCcctctgaGATACAGATGATGGCTCTGCCTCATGCTCAGTATGTGCTGGCAGATGCTGGCACACCTGTCACTGCAGCAGCTAACAGCAGCCAAGTCAAAACGACTCACTATGTGATCTCTGAGGGGCAGACTGAGCTGGATAATAAACAAGATAATGCCCCATCCACCACCAGCGAGGTAAACACTGACCCTTTGGAGCAGCCATCTGCCAGTCAACAGGCTACCACCCAATACATAATTAAAACCACAACTAATGGATCTGGTGCGAGTGAGGTGCAAATTACAAAACCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120731 lncRNA upstream 94255 19706351 ~ 19707573 (+) True G101990
TU120645 lncRNA upstream 216393 19585185 ~ 19585435 (+) True G101919
TU120627 lncRNA upstream 314546 19486401 ~ 19487282 (+) True G101904
XR_004578348.1 lncRNA upstream 414891 19362733 ~ 19386937 (+) True LOC117597585
TU120567 lncRNA upstream 464834 19336768 ~ 19336994 (+) False LOC117597536
TU120796 lncRNA downstream 19993 19854517 ~ 19854743 (+) True G102050
XR_003402828.1 lncRNA downstream 58631 19893155 ~ 19897283 (+) True LOC113527003
TU120841 lncRNA downstream 89738 19924262 ~ 19928951 (+) True G102091
TU120843 lncRNA downstream 101639 19936163 ~ 19936424 (+) True G102093
TU120840 lncRNA downstream 133257 19967781 ~ 19969787 (+) False cdon
XM_026914346.2 mRNA upstream 13936 19782594 ~ 19787892 (+) True LOC113526906
XM_026914428.2 mRNA upstream 28386 19682060 ~ 19773442 (+) False aplp2
XM_026914298.2 mRNA downstream 1009 19835533 ~ 19845837 (+) True si:ch211-151h10.2
XM_026914000.2 mRNA downstream 85525 19920049 ~ 19968011 (+) True cdon
XM_026914001.2 mRNA downstream 86096 19920620 ~ 19968011 (+) False cdon
XM_034305406.1 mRNA downstream 86341 19920865 ~ 19968011 (+) False cdon
XM_026913610.2 mRNA downstream 169832 20004356 ~ 20053142 (+) False bcl9l
TU120293 other upstream 677951 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 680702 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 1007555 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 1061830 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 1202453 18598714 ~ 18599375 (+) True G101419
XR_003402807.2 other downstream 1191503 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 1952592 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 3118153 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 3328583 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 3437534 23272058 ~ 23272208 (+) True LOC113527010

Expression Profile