RNA id: XM_026913981.2


Basic Information

Item Value
RNA id XM_026913981.2
length 6977
RNA type mRNA
GC content 0.48
exon number 11
gene id map3k10
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24582204 ~ 24627029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGGTGTATCTGGATACAAAGTCAGCTTGAGCTGACAGTGCGATCCATGGACACGGAATACACGGGCTGTGTTTGACAGAAGGAGAAAAACAAGCAGGAGACGTGTGGATCAAACAGGAGAGTGCGGGGGAGGAAAGTGGCCCGATTTCCGTCCAGGACTGGAATAAAGCGTCGTAATGTCACGCCCGAGGCTGCAGTAGTGATGATGGACTGTAAAGGGAACCAAGCAACCACCAACCAGGGATATATGGATCACAAAACAGGCTTTTAACCCAAGGACTGAGGATTACAGATAAAACAGCTGGaggttgtttattattattatcattattattattattattattattattattattattataagatgGTGGAAGGATGCGTCGGTTTGCAGCTTCTCTATCAGCATCAGGTCAGATTTCATCATCCTCGACCTATTACAAGGAATCAGAAGCACAATAATTTCCCATTCGAGCGATATTAATAGCCCCCTAGGGTTAGTAGAGCGGCGTTAAACCCCTCAGAAGTGGCTGCCTCACTTGTCTGTATAACAGGGATATTCCTCTTTAGAAATGACTGCATGGGGACAGTAAGGACAGCAATGCCACGGAGAAAAGGAGGACACGGTCTATGCAGGCATCTATGCAATGCATATTCAAGATAAAGAAGGTGCAGTTGGAGGATGTGGATTGTTGGATGCTTCCCTGGCTTGAACATGGATGGACCTGCAGCCTGTTTCCATAAATCGCACAGGTAATCGAATTAATGCCCGACCTGTGGCCTCTAGCACTAGATGTGGACCCAAACCAAAGACTTTAAAATTGTTTCCACCATTATGACCGAGACCTGAGCTTAAGGATGTGCCGAATGGAAACATGCGAGAATGACTGTCTAATCAGATGGAGGGAGAAGGTGCTGTGTCTGATCTGAGATAGTCGTAGTAAGATTAAACTATAATCGTATACCTCGGTTGCTTGTGATTGTGATAGATGTATGAACAGAATGAATGACTGCATTAATGACTGCGAGAAAAGCATGCCATATCATGTCAAGTCTGCCTACAGATCTATAAGACTAATAGGATAGAAGAGATGCGAGAGATGCAGGCCCTGTGATGATGCTCCAGTGGAGGAAACCAAGACAACCTTTCTCATGCATCCTTGGTGCTGAAGGAAGCACCCAAACTGCTAGatgatcatttaaaatcagTCAAAACACATGACTTCATTCTATTTAATAGTAGAAAATTAAGTCATAATGATTTCAGACACCTGTTTGAAAGTGCCTTTATAGATGCTAGTACACAGAGACTGTAATTCTGCTAAAAATAGCTTTCCAGCACATAAGAATAGTGCTTTTTGCAAGAGATTTAACACATCCCTCCAGTTAAAAAGGCCTGAATTTGGTTGATGTGTTCTGCATGGATTTTGTGCATGAGTTGACCGAGGTTCTCCCCCAGCTGTTGAAACCACACCGCTGACTCAGTTATTTTGGAGATGGACCCAAATTCAACACTAAACAGTATGGGTAGTGGAGGAAATGCCACCCCACTACCCTGCACTGGGTGTGGAGGTTCCTGTGGAGCACCACCCCCCTCCATCGTGCTACCAAACACGAATCAGACTCCCTGTCTCACTCATGCAGAGAACGGCAGCAGCTGGAATTCCTCCACCCTGTCCTCCTTGGTCAGCTCCCCTGATTCTCACATCCACCAGCATCATGGAGCCTCCAACCCTTACTGGACAGCCGTGTTTGACTATGAAGCGGCGACGGAGGAGGAGTTGACCCTAAGGCGTGGGGATCTGCTGGAGGTGCTTTCCAAGGATTCAAAGGTGTCTGGAGATGAGGGATGGTGGACTGGTAAGATCCAAGACAAGGTGGGCATCTTCCCCAGCAACTATGTGACACGAAGTGACACCACGCTGCCCACTGGAGGTTTACTGGTGGGTGGTGAGAGTCCTCTGGAGATCGACTTCTCAGAGCTGTGCTTGGATGAGGTCATAGGAGCGGGAGGCTTTGGGAAAGTGTATAAAGGCGTGTGGAGGGCTGAGGAGGTGGCTGTGAAAGCAGCACGCCAGGACCCCGATGAGGACATCAGCGCCACGGCGGAGAGTGTGAGGCAGGAGGCACGGCTCTTCTGGATGCTCAGGCACCCTAACATCATTGCACTGAAGGGCGTCTGCTTGAAAGAGCCTAACCTTTGCCTGGTAATGGAATATGCTCGTGGTGGGGCACTAAATCGGGCACTGGCGGGGAAGAAGGTTCCTCCTCGGGTCCTGGTTAACTGGGCAGTGCAGATCGCTACTGGCATGGACTACCTGCACAACCAGACCTTTGTTCCCGTCATCCACAGGGATTTGAAGTCCAGTAACATTCTGATTCTGGAACCGATAGAGAGAGATGACCTGAGTGGTAAGACACTAAAGATCACAGACTTTGGACTGGCACGGGAGTGGCATCGTACCACTAAGATGAGTGCGGCGGGCACCTATGCCTGGATGGCTCCAGAGGTCATTAAGCTGTCGCTCTTCTCTAAAAGTAGCGATGTGTGGAGTTTTGGGGTACTGCTGTGGGAGTTGCTGACTGGTGAGGTGCCGTATCGGGAGATTGATGCCTTGGCTGTGGCCTATGGAGTCGCCATGAACAAATTGACCCTCCCTATACCATCCACCTGCCCTGAAGCCTTTGCTCAACTGTTGGGAgAGTGCTGGAGCCCGAACCCTCACAGTCGTCCCTCCTTTACTAGTATACTGAAAAGGTTGCTGGCCATCGAGCAGTCCTCCATGTTCCAGATGCCACTGGAATCTTTCCATTCACTGCAGGAGGACTGGAGGCTGGAGATCCAGCAGATGTTTGATGAGCTGAGGGCCAAAGAGAAGGAGCTGCGTTCCTGGGAGGAGGCGCTGGCTCGGGCTGCAGAGGAACAGAGGACGCAGGAGGAGCTGTTGAAGAGACGTGAGCAAGAGTTAGCTGAGCGGGAGATTGACATCGTGGAGAGAGAGCTGAACATCATTATCCATCAGATGTACCAGGAGAAACCACATGTCAAAAAGCGCAAGGGCCACTTCAAGAAGAGCCGGCTGCTCAAACTGGGCCGAGACAGCAACTGTATCAGCCTGCCCTCTGATTTTGAGCATAAGATCACAGTGCAGGCCTCCCCCAGTGTGGATAAGAGGAAAAGTCAGGGCAGTGAGAGCACCACTCCACCAGCCAGTCCAGGTGTTATACCTCGCCTCAGAGCCATTCGATTGACCCCGAGTGATGGGAGGAACACTTGGGGGCGTACAGCAGTGTGTAAGAAAGAAGACCTGACAGGGACAAAAAAGAAGGGCCGTACCTGGGGTCCCAGCTCCACCCACCAGCGGGAGCGGGTTGGAGGAGAAGAGAGGTTAAAGTCACTTGGAGAGGGGAAGGTGTGGTCCTCCAGTGCTCCTAATCTGGGCAAGTCCCCCAAACATGTCCCTATAACTGGTGGCTTCTCCAGTCTCAATGAGATGGAGGAACAGTGTGAGCTCGAGGAGAGATTGGCTCCCGAGGGCAGTAGCAACGGGGCGACGGAGGATGCCAGCCATGCATGGACAGGTGTGGGGCCTGGAGTGGGTTCCCAGGACCCTTTGCGTCGCTGCAATCAGAGGAAGAAGAGTGACATGGTACTGCTGGGCTGCGCCTCCATCTTGGCCGCCGTGGGCTTCGGCACAGATCTGCTCCAGCTGGGACGATTGCAGgtgagtCAGGACGAACAGGATGCACGTGAtgagcaaagaaaaaagaaggaaggtcTGTTTCAGCGCACAGGCCGATTCCGGCGCAGCACATCTCCCCCAAGCCGTacactgtctctgtccctgtcccACAACCGCCATCATCACGAATCTGCACTGCCCTGCCTGGACCCGTCTCCTTCTGTCAcactcctctccctctcctctctttctgaCTGCAACTCCACCAAGTCCCTGCTGCCCTCAGACCCAGACGATCTGATCCCAAGTCCGAGCAGCACCATGCCTTGTCCAGCACCCGCTCTAAACCCCCTGCTGGATCTGCGAGCAGAGAGTTTCAAACGGGAGCCCAACCAGTCGCTCACACCCACCCATGTCTCTGCCACCATGGCTGTGAACCGCGGGCACCGACGCACGCCATCTGACGGTGCCATCAGACCTCGTGCACAGACAGTGACAGAGCACCGACGCACGCCCTCAGATGGCAGCATGCCAATTCCTCCCATCACGCCcactaacacaccacacacagGGTCTCGTGACACTCTAGATATCCCTCGTCTCCCAGACCCATCCACAATCTACCCCGCAGTGCATCGGCGTAAACCTCCTCCTTCTTCAGAGTCCCAGACCGGGACCCTTGAGCGGCCCAAGACATTGGAGTTTGCCCCCCGTCCCCGCCCCACCCCGGCCCGAGCGCGTCCAGACCCGTGGAAGTTGTCGTCACTGTCCCGGACACTCAGCTCATCTCCGGGGAGCAGCTGTGACAGTCCACTAGGCTCTGGGGACAGCGGGGTCAGCGCAGGAGCCACCGCTGGCCGCCAAACTCTGCTGGACATGGACATGGAGGGGCAGAGCCAAGACAGCACGGTGCCTCTATGTGGGCAGCATTCACAAGCCACACTGTGTGGGCAGCACTTCTCATAAATTCCCAGGAAACCTCCATTATAACCAGGGCTGCCTGGCCTAATTTACATAGCCAGCATATTCCCTAGACACAAAAGGAGCCATGAAAGTCCTGGCTCCGTCCTGCATATCTCATGGAGGCCATTGTGGTTGGTGTCACTATTAGACAGAGTATCCCAGAAACCACGGCTGTCCCAACACAGTGAGTGTGAACGAAGtactcaacaacaacaacaacaacaaaaaaaatcacctggagggctgtggattatttttcataGCCACTGCAGTGAACCACAGTCTTAGACCTGCAGCACTTTTATGAGCTCCATAAAAGTAAAGGTCAAGTCCTACTGCTTGCATCATTCCCCTATAGATTGTTCAATAAAACTCTCTTTTTTAATAACCAGGTAATATGTATGTGATGAATTGCATTGGCAAAGCCATTCCTTTGATACTGTATTTTCTGGACAATAAGTTGCTCATGTTTTTTAAGACAGACCTCCCttcattatgaagaaaaaatgatATATACTTAAGTTTGCTATTTATGTCACATTAATAgataagacatttttattttacaaataactGTACTCTCCTCTAAAATGGAACATACAATAAGAGACCCATACTGTAATAGTGTGCTTTAGCTTTTGTCCCTTACCACAGTTCAGGGCCATATTgtgtaagctttttttttttttcaaaatgtttgctATACTCCTGATTCCTCTGTCACAATATCTGTCTGAGGTCATTATATAGCAATGTTTTATGCTGAAACCTACATGCCTCAGCCTGCATTCAAAATACTGCACAGCACAGCAATTAGATATTGCATATAATCCAGTAACTAggaagcaaagaaaaacattcaaGTCTGATTTTATCCGTTCACAGTCTtcgaaaaacaggaaaaaatattCTACCGTTTCTTACAGGAGCTATAATGGCTGTCTGGGGGATTAGCGTTTAGCTTTTCCAATGTCAAGCTAATAACTTGAGTAATTTAGCCATGTTTGGTGGTATTTTTAGTTTGTAATTTCTTCATTTcgttgtttcatttttatattgtcctttatttattgatttttttctgtatatttttccaAATCCTAAACGGCCTCTTTTTTGGAAAATGGGTAATATTTTACTCTCTCACTGAAGCTTCTGAGATGTCAGCTCTCCTGTTTGCATACAGTTTGCTCAGAAAGCGTCTCCCATGCTTATTTACAATTATAAATTGGCCAAGATATTTTTAGGGGAGGAGCCTTGTGAACGGTTTTAGTGTCTAAAATCTGCCATTAGAACACAGTTCATGTGCATACGGCTCAAATATTTCCAGTTTGATACAATTCTAAGGTATGGCAATTACCATACGTCCAACATAAAGACACTAACAACTGGCTATATTACAACTAGGCTACAAAATGATGATAAGAGGACAAAACTGTGGGTCTTATAGTCCAGAAAATATGGTAGATCtaagcatatttttttattcttctgtttTTGAGGAGAAGACTGACCATCTCTGGCTCTCTGCAGAACCTAATCAGAAAGCAGGAGCTGTTTTAATGTGAAGGCCTTGTTTGTCAGCAAATCCTGATGTACAGTACATATTGCCTGTGTGTAAGTATGTAAGcaagagtgtgtgcatgtgtctatCTGTGAGGAAGTGTCATAGGAGTTAGAACGACTGAGAACTGGTCTCATCAGCTGTTTCCGGTTTAAATGCACTCTCACTTCCATTTTCCTCAGTAAACAGGAACATTATGGGCCTGGAGAAAGGGAAGGACTGTTATGGTCAAACGAGCATCTCTGTCCATTTGCAATAAAATACGAAACACTGTACCATAATGTACTACCTGTATtcaaacatacacacttttTTACCTCTTCAAATGAGACCATGGAAGATCTTCCTCCACCTACACACTGATCTGAGAGAAAGGAACTGCgagatgcagtgtgtagtgcttttctttattttgatgCCCTATGAAATGCCGCTGTAATCAGTCACAAAGAGAAGGATGCGTGATGACATCATTCCATTCAGAACAAGGAGCCCTTGACCTTGTGTTTATGACGTTGAATTGTATGACGCCGGAACACACTTTTTTGCTCGAAGGTTCAACCTGGTAATCGACAGTATTTTTTAGACTGTCTGccggtgagtgtgtatgtgcgtgaatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgttcttattgTTATCATTTGTATGGGGTGACTCTGTGGAGGGATGAGACACAAAGCCGTCCCCTATTTCCTGTGTGAAAAGAACTAAgagtatttattaaaattattgttatGATTGAA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0005524 ATP binding molecular_function
GO:0004709 MAP kinase kinase kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K04417 MAP3K9, MLK1; mitogen-activated protein kinase kinase kinase 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123404 lncRNA upstream 10317 24564632 ~ 24571887 (+) True G104284
TU123377 lncRNA upstream 98108 24480365 ~ 24484096 (+) True G104257
TU123375 lncRNA upstream 98182 24480365 ~ 24484022 (+) False G104257
TU122944 lncRNA upstream 827944 23749063 ~ 23754260 (+) True G103896
TU122937 lncRNA upstream 839889 23739688 ~ 23742315 (+) False cstf3
TU123569 lncRNA downstream 135613 24762642 ~ 24764112 (+) True G104429
TU123667 lncRNA downstream 199737 24826766 ~ 24827147 (+) True G104509
TU123681 lncRNA downstream 308547 24935576 ~ 24935879 (+) True G104523
TU123678 lncRNA downstream 384887 25011916 ~ 25012779 (+) True G104520
TU123680 lncRNA downstream 386083 25013112 ~ 25108966 (+) True G104522
XM_034305318.1 mRNA upstream 114728 24462826 ~ 24467476 (+) True six9
XM_026913861.2 mRNA upstream 114728 24462831 ~ 24467476 (+) False six9
XM_026913862.2 mRNA upstream 115418 24462828 ~ 24466786 (+) False six9
XM_026914032.2 mRNA upstream 120501 24448341 ~ 24461703 (+) True six5
XM_026914057.2 mRNA upstream 155076 24392298 ~ 24427128 (+) True yap1
XM_034305013.1 mRNA downstream 364753 24991782 ~ 25011741 (+) True b3gat1a
XM_026913405.2 mRNA downstream 364753 24991782 ~ 25011741 (+) False b3gat1a
XM_026913987.2 mRNA downstream 408484 25035513 ~ 25038677 (+) True exosc5
XM_026913986.2 mRNA downstream 408488 25035517 ~ 25040089 (+) False exosc5
XM_034305166.1 mRNA downstream 509985 25137014 ~ 25139561 (+) True opa3
TU122935 other upstream 839889 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 952481 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 1307695 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 1308746 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 1309996 23272058 ~ 23272208 (+) True LOC113527010
TU123976 other downstream 667870 25294899 ~ 25306811 (+) True G104781
TU123982 other downstream 667870 25294899 ~ 25315213 (+) False G104781
TU124829 other downstream 2203949 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 2584360 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 2931807 27558836 ~ 27558946 (+) True trnal-caa_8

Expression Profile