RNA id: XM_034305023.1


Basic Information

Item Value
RNA id XM_034305023.1
length 1434
RNA type mRNA
GC content 0.47
exon number 11
gene id ubl7b
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26303120 ~ 26311502 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCAGTAGTACTTGATTTGTACTTGATATAATTTGATTGAATTAGAGATAAAAATCTGACACTATACTTgactacacacatatatttgACACATTGAGTTTTAGTTAGCTAGCAGCATTATTTTCTGACATTAGGCctatttaatgttatgtttaGTAGATGGACAGTTTctgaatctaaaatgtttccAGACTTGTTTTGACATGGAAAATCCTTTTTGGCATCTGTCTCTGAAGCTTCACAACAGGCCGAAGTCAGTGTTGCCTTTCCCTGAGGATGTTGAACCTGGAAGCTACATGGTGGCCACCATAAAGCAGCTGGTCTCAGCGCAGTTACCAGACTCACTGCCAGATCCGGAGCTCATAGagctgGTTCACTGCGGGTGTAAACTAAAAGACGACTTGACATTAGATTCCTATGGGATCAAATCAGGATCTACATTGCACATCTTAAAGAAAGTGTGGCCAGAACCTGCGGTCAAGCCAGAACCAGTGAACAGAAGTGCTGCAGCGAGAGAGTTTAGACTGCTTCAGGCTGCCATGCACTCCAGTGCTGCGTACAGAGAGGCAGTGTTTAAGATGCTGAGCAATAAGGAGTCTCTGGATCAGATCATAGTGGCCTCCCCTGGGCTCAGCTCAGACCCTGTCGCATTGGGTGTTCTACAAGATAAGGATTTGTTTGTGCAGTTCACAGACCCCAATCTgcttgatgtGTTGGTCCGATCTCATCCAGCGCTGGTTAATGCCATCATTCTGATCCTCCACTCTGTGACGAGCAGCATGCCTGGCCAATCAAATGCAAGCTCCTCCCACAATGCCCCTGCTAGTTCCTACAGTGAAATGCCAGGAGGATTTATGTTTGAGGGCATgtctgatgatgaagatgatttcCAATCcGGAAGTCGTGCAGGCTCATCCCAGCGGCCGAGACCTCCAACCAATCTGAGCAGCGGCGGAGCTACAGGGCCTCGACCTATCACTCAGAGTGAGCTAGCTACAGCGCTAGCTCTGGCTAATACACCAGACAGCAGTGCAGTCACACCCATTCTGGGCAGCCAAgacgTGTCCACTGGCAgttcttcagcagcagcagggaCTCCTGTCACTAGCAGTGTGTTGAGTCGGGCACTACAGCAGGCTCTGGAGGCTTCTGGGGTGACCCCTCTGcagGGGCGCTGGCAGACGCAGATGCAGCAGCTGAGAGATATGGGCATCAGAGACGAAGAGCTGGCATTACGAGCCCTCCAGGCTACAGACGGAGACTTGCAAGCAGCACTCGAGCTCATTTTtgctggaggaggaggactCTGAGGCCTAGAGGTCTAAGGATGGAGGAAACTTTTACATTAAAAACTTTAGATATTACATCTGTaatacatcattttttaaattttttggaAATTAGTACTAAATAAATGGAACAAAGTACTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124338 lncRNA upstream 398044 25903826 ~ 25905288 (+) True G105118
XR_004578347.1 lncRNA upstream 961024 25340623 ~ 25342308 (+) True LOC117597584
TU123977 lncRNA upstream 998928 25294899 ~ 25304404 (+) False G104781
TU123980 lncRNA upstream 998928 25294899 ~ 25304404 (+) False G104781
TU123938 lncRNA upstream 1057467 25245664 ~ 25245865 (+) True G104751
TU124552 lncRNA downstream 8507 26320009 ~ 26323500 (+) True G105320
TU124687 lncRNA downstream 201934 26513436 ~ 26516780 (+) True G105446
TU124691 lncRNA downstream 214418 26525920 ~ 26527807 (+) True G105450
TU124690 lncRNA downstream 219833 26531335 ~ 26532088 (+) True G105449
TU124727 lncRNA downstream 299439 26610941 ~ 26611260 (+) True G105479
XM_026913489.2 mRNA upstream 220059 26009102 ~ 26083273 (+) True insyn1
XM_026913488.2 mRNA upstream 220059 26009102 ~ 26083273 (+) False insyn1
XM_026913333.2 mRNA upstream 425132 25872482 ~ 25878200 (+) True LOC113526365
XM_026913863.2 mRNA upstream 464043 25815841 ~ 25839289 (+) False mob2b
XM_026913603.2 mRNA downstream 242966 26554468 ~ 26565211 (+) True chrnb4
XM_026913602.2 mRNA downstream 257093 26568595 ~ 26578544 (+) True chrna3
XM_026914348.2 mRNA downstream 303320 26614822 ~ 26622142 (+) True LOC113526907
XM_026914349.2 mRNA downstream 303320 26614822 ~ 26622142 (+) False LOC113526907
XM_034305274.1 mRNA downstream 303320 26614822 ~ 26622142 (+) False LOC113526907
TU123982 other upstream 988119 25294899 ~ 25315213 (+) False G104781
TU123976 other upstream 996521 25294899 ~ 25306811 (+) True G104781
TU122935 other upstream 2561017 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 2673609 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 3028823 23274359 ~ 23274509 (+) True LOC113527008
TU124829 other downstream 519476 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 899887 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 1247334 27558836 ~ 27558946 (+) True trnal-caa_8
trnal-caa_9 other downstream 1248885 27560387 ~ 27560497 (+) True trnal-caa_9
XR_003402810.2 other downstream 1633288 27944790 ~ 27966308 (+) True LOC113526832

Expression Profile