RNA id: XM_026914057.2


Basic Information

Item Value
RNA id XM_026914057.2
length 4022
RNA type mRNA
GC content 0.46
exon number 8
gene id yap1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24392298 ~ 24427128 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCCAAAAGTTGCTGAAGAacttcagagaaaaaaaagtttggtcAGTGAATGCGCAGTGATTTTCAGTGCCTAGAAATCGCTTTGCAGATGTCTCTGGAAGTGGTACTCCACTTACTGGAAAAGGTGTCCAGCTTTCAGATTAAAACTTTTTGAAACTTCGATTCCTGGAGGTTTTTggaagaagtttttttttttttaatcgggAAAGTTTGGGAAGATATGCGCGTTTCTACACTGGGCAGTGGGTCCTGGCCGAGCGGAAAAATAAACCGTCGCCGTGTGTTTATTTTCGCCAGGCTTGGATAGCGAGTTTACGCCAGTATTTGGATAAGTAGCGCGGCGCGCGGATGAGTTTAGACTCGTTCAGATTGATGCAGTTCGGACTTTCTGCGCGCGGTTGACGCGTCTTTGAGCGCTTCAGTCAGATAAGTGATTActgcttgttgtttttttaaataaggagGTTTTTTTTGGGTCTTTGCTTCTTGATTTGAAATCATGGACCCGAGCCAGCATAACCCCCCCGCAGGACACCAGGTGGTCCATGTCCGCGGAGACTCGGAGACCGATCTGGAGGCGCTCTTTAACGCCGTGATGAACCCCAAAAGCGCCGCTGTGCCCCCATCCGTGCCAATGAGGATGAGGAAGCTGCCAGACTCCTTCTTCAAACCACCCGAGCCCAAATCCCACTCCAGACAGGCGAGTACAGATGCAGGCACGGCCGGTACGCTCACTCCACAGCATGTCAGGGCGCACTCCTCGCCTGCCTCCCTGCAGCTGAGCGCCGTCACATCCGGCACGATGAGCACCCTGACCCCAGCAGGCACCTCCCCCCAGCACCTGCGTCAGCCCTCCTACGAGATCCCTGATGATGTGCCCCTTCCTCCAGGCTGGGAGATGGCCAAGACCCCGTCTGGCCAGAGATACTTCCTTAACCACATTGACCAGTCAACCACCTGGCAGGACCCTCGCAAGGCCATGCTCCAGATCACCCAGCCGAACTCAGCCAGCCCTGTCCCTGTTCAGCAGCAAAACCTCCTGAACCCGGCCTCAGGTCCTCTTCCTGAAGGCTGGGAGCAGGCAATCACAGCAGAGGGAGAGATCTACTACATCAACCACAAGAATAAAACAACATCCTGGCTGGACCCACGGCTCGACCCACGCTATGCTCTGAACCAGCAGCGAATTACCCAGAGTGCTCCAGTAAAGCAGGGCACCCAGCTCCCCTCCAGCCCCCAGAACCCAGCCGTCATGGGAGGGAACAACCAGATGAGACTGCAGCAGCTGCagctggagaaagagagactgagactTAAACACCAGGAGCTGCTCCGCCCGAGACCACAGgagctggCTTTGAGGAACCAGCTGCCCACCAGCATGGAGCAGGACAGTGGCACTCAGAACCCGGTGTCGTCCCCTAGCATGGGACAGGACGGTCGCAGCATGACCACCAACAGCTCAGACCCCTTCCTCAACAGcgGAACATATCACTCCAGAGATGAGAGCACAGACAGTGGCCTGAGCATGAGCAGCTACAGTGTCCCGCGCACTCCAGACGACTTCCTGAACAGCGTAGATGAGATGGAGACAAGCGACTCCCTCGGCCCTGCGTCCTTGGCGACCCAGCCAAGCCGTTTCCCAAACTACCTGGATGAAATCCCAGGCACTGATGTGGACTTGGGCACCCTGGAGGGCGAGAGCATGGCAGTGGAAGGCGAGGAGCTGATGCCGAGCCTGCAGGAGGCGCTGAGCTCCGACATCCTGAACGACATGGAGTCTGTGCTGGCTGCGACCAAGATCGACAAAGAGAGCTTCCTGACCTGGCTATAGATCAGCTTTAACACGCACTCCGCCTCCGCTATCTTCACACTGAACTGCTGCCTAGGCCAATCTGTGAAGGATGTGTAGAtgctttgagttttttttttttttggtggtttttAAAGAGACATTTCACTCTCTTAAGACtttgattgcatttttttttcccactcacATTAAGCATTAATCACGGTTGGACTGGTTTCATTGGGGGCTTTTGCCTGTAATATATAAACCGCACTTGGCCGAACTGGTTTTACAAGcagatttaatttcttttatttcttttcccctcccatcaccttttttttttcatgtctgcATCCTCAAGGCTGGCCCATGAACAGACAATTATTCACCCTCTCCTCTTATACACGTGTGTATGGCTTTGACAAAGTGTTGAACCCTCATCACTCTCGTATACAACCTCATCCTCGCCCACGGCCTGAACTGCCGTTTCCCTCTTTCCTTCATTCACTACAAGCCTGGCAAACCAAAAACACTCACGAGGGCTGCTTGCATGTGTGTGGATCATGATGAGATCTCAATGAGCTTGAGCTGGAGATCTTGAGGGTTGAACCTGTTGCTTTAGGAAGGCTGATCACCCTGCTCGGCTGTGCCAGCATATCAAACTGTAATCGATACAAGTGCCTTCGGTTTGATCTCATAGTGCAGCAATTAAAACACTACTTTTtaacactatatatatttacGAACAATTCTGACCGCGCTCTTTTCTATTTACAGTTTTCATTAATCGAAAATGTCTTTtaaagtttatataaaaatgcattttgttggATTTTTCTAAACTCTAGCCTCAGTCTTatgactgactttttttttccatgtatgATAGATCAGATTCTTTTCTCATGGTAACTGGTTTGTTATCTAACAAGGTTGCCTTCCAGCATGCTGCCACTGTTTAATCATCGCAGAATAGATGGAACTGATTATTACTATTACCTAGTAATCAGCAGAAATGATCAGGCTAGATTCAGAGAGCTGTTTTTGTATGTTAATATGTAGGTTTTCaatcattattaatgtatttttgccTAATCAGTGACAGTATCGTTCGAAAGCAAGGAGCAGAATGTCAGAGTAACTTTTATCAGTGACAAGCTGAGGAAGAGGATGGACGCCCGTTggcatggaagtgattggagcGGTGGATTTGCTATGTTTTAAGCTGGATAAATAAGCACGTCTCGAGGGTTTGCGGTTTAGAGCGGAGGGTAGCTGGTACTCGATTTGGTAATCACGATTAAGAACGATAGTGTTGTAGAGTTTAATGGAAACAATCAGCGATAACTTGTCAggattttttatttgcttttgacGAGGCTTCCAAAGAGTTTAATgagtctttttctcttttaaaaacaaaataatttatccTATTctttgtgtgtatacatgtagCATAAGCTAATGAGAGAATGTCCAGCTGATGATTAGTCAGTGGATATGTGATGACTGTCACAAATCTCCCATACTAGATACTCGATGAGCAAGTTACCAAGAGCAGCCTTGTTGTCAGTCGTTTACATTGTTGCAGAGCGATAGAACACTACAGACGTTAAGCGATAATGCTGTTGTAGATCCTTTATATAGAGACACAATGTGTATCTTAAGATGTTTACAAGATTATTACCCCCTACACTACTCAGATGATGATCCTAcactttaaatgtgattttattttttaaaagtaaaggTTTGTTAATGAAATAACAGTTTATTTGATGTACTTGTATTCCTTCAGGAGTCAACATGAACaaggcatgtgctgataatgGCTCATATGATGTATCAATATTCAAAACACTGCAAAACGATCAAAATGCCACTTCCCTTGCATTCCATTTCCGAGGCAGCTGCCAAAGTAGGCAACATTTTTTTGGGGACATTTGTGCTCCTGAGGTAAAGTCTCTCATTCAgaatttctaatttaataaaaaatatcataatgTCAGATACCATgataaaatgtaagaaaatattgtgatatgaaaATTGAATATCAGCACCTGCCTTATGTGAACAAAGATCAAAACCTGTGATCAAACTTCGTCGCTGTGACCTGAACAAATAGTGGAAAACAAGACCCAGGTAGTATGTTTAGAATAGTATCTATTTTTACAGAAGTATGGTGTTGGACACTAGTTGGAATAAACAGTGTTGGAGATA

Function

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K16687 YAP1, Yki; transcriptional coactivator YAP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122944 lncRNA upstream 638038 23749063 ~ 23754260 (+) True G103896
TU122937 lncRNA upstream 649983 23739688 ~ 23742315 (+) False cstf3
TU122936 lncRNA upstream 650038 23739651 ~ 23742260 (+) False cstf3
TU122932 lncRNA upstream 653545 23729878 ~ 23738753 (+) False G103889
TU123375 lncRNA downstream 53237 24480365 ~ 24484022 (+) False G104257
TU123377 lncRNA downstream 53237 24480365 ~ 24484096 (+) True G104257
TU123404 lncRNA downstream 137504 24564632 ~ 24571887 (+) True G104284
TU123458 lncRNA downstream 148364 24575492 ~ 24634405 (+) True G104325
TU123569 lncRNA downstream 335514 24762642 ~ 24764112 (+) True G104429
XM_034305020.1 mRNA upstream 7852 24368079 ~ 24384446 (+) False cep126
XM_026913419.2 mRNA upstream 7853 24368079 ~ 24384445 (+) True cep126
XM_034305021.1 mRNA upstream 7855 24373053 ~ 24384443 (+) False cep126
XM_034305019.1 mRNA upstream 8679 24368079 ~ 24383619 (+) False cep126
XM_026914312.2 mRNA upstream 43002 24339635 ~ 24349296 (+) False si:ch211-71n6.4
XM_026914032.2 mRNA downstream 21213 24448341 ~ 24461703 (+) True six5
XM_034305318.1 mRNA downstream 35698 24462826 ~ 24467476 (+) True six9
XM_026913862.2 mRNA downstream 35700 24462828 ~ 24466786 (+) False six9
XM_026913861.2 mRNA downstream 35703 24462831 ~ 24467476 (+) False six9
XM_026913981.2 mRNA downstream 155076 24582204 ~ 24627029 (+) True map3k10
TU122935 other upstream 649983 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 762575 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 1117789 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 1118840 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 1120090 23272058 ~ 23272208 (+) True LOC113527010
TU123976 other downstream 867771 25294899 ~ 25306811 (+) True G104781
TU123982 other downstream 867771 25294899 ~ 25315213 (+) False G104781
TU124829 other downstream 2403850 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 2784261 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 3131708 27558836 ~ 27558946 (+) True trnal-caa_8

Expression Profile