Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026914063.2 |
| length | 1008 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 5 |
| gene id | gcsha |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 27710176 ~ 27713570 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0032259 | methylation | biological_process |
| GO:0019464 | glycine decarboxylation via glycine cleavage system | biological_process |
| GO:0005960 | glycine cleavage complex | cellular_component |
| GO:0004047 | aminomethyltransferase activity | molecular_function |
| id | description |
|---|---|
| K02437 | gcvH, GCSH; glycine cleavage system H protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU125432 | lncRNA | upstream | 107442 | 27602158 ~ 27602734 (+) | True | G106064 |
| TU125360 | lncRNA | upstream | 164659 | 27543059 ~ 27545517 (+) | False | ddx11 |
| TU125340 | lncRNA | upstream | 211546 | 27498431 ~ 27498630 (+) | True | G105981 |
| TU125251 | lncRNA | upstream | 475952 | 27229784 ~ 27234224 (+) | True | G105904 |
| TU125136 | lncRNA | upstream | 565145 | 27141845 ~ 27145031 (+) | True | G105855 |
| TU125500 | lncRNA | downstream | 12832 | 27726402 ~ 27729161 (+) | True | G106118 |
| TU125760 | lncRNA | downstream | 384159 | 28097729 ~ 28098001 (+) | True | G106343 |
| XR_004578326.1 | lncRNA | downstream | 520237 | 28233807 ~ 28244868 (+) | True | LOC117597547 |
| XR_004578327.1 | lncRNA | downstream | 520237 | 28233807 ~ 28244868 (+) | False | LOC117597547 |
| TU125917 | lncRNA | downstream | 676628 | 28390198 ~ 28450197 (+) | True | G106477 |
| XM_034304962.1 | mRNA | upstream | 109607 | 27558440 ~ 27600569 (+) | False | iqsec3b |
| XM_026913411.2 | mRNA | upstream | 109607 | 27562467 ~ 27600569 (+) | True | iqsec3b |
| XM_026913412.2 | mRNA | upstream | 113257 | 27562467 ~ 27596919 (+) | False | iqsec3b |
| XM_026914193.2 | mRNA | upstream | 164650 | 27526123 ~ 27545526 (+) | True | ddx11 |
| XM_026914194.2 | mRNA | upstream | 164650 | 27526123 ~ 27545526 (+) | False | ddx11 |
| XM_026914112.2 | mRNA | downstream | 133248 | 27846818 ~ 27854765 (+) | True | nob1 |
| XM_026913763.2 | mRNA | downstream | 146458 | 27860028 ~ 27863418 (+) | True | nip7 |
| XM_026914289.2 | mRNA | downstream | 176191 | 27889761 ~ 27891260 (+) | True | LOC113526868 |
| XM_026914104.2 | mRNA | downstream | 189201 | 27902771 ~ 27915940 (+) | False | pdpr |
| XM_026914105.2 | mRNA | downstream | 189201 | 27902771 ~ 27915940 (+) | False | pdpr |
| trnal-caa_9 | other | upstream | 149679 | 27560387 ~ 27560497 (+) | True | trnal-caa_9 |
| trnal-caa_8 | other | upstream | 151230 | 27558836 ~ 27558946 (+) | True | trnal-caa_8 |
| TU125244 | other | upstream | 495606 | 27211389 ~ 27214570 (+) | True | G105898 |
| TU124829 | other | upstream | 876749 | 26830978 ~ 26833427 (+) | True | G105569 |
| TU123982 | other | upstream | 2394963 | 25294899 ~ 25315213 (+) | False | G104781 |
| XR_003402810.2 | other | downstream | 231220 | 27944790 ~ 27966308 (+) | True | LOC113526832 |
| TU125656 | other | downstream | 245955 | 27959525 ~ 27961771 (+) | False | LOC113526832 |
| TU125683 | other | downstream | 353342 | 28066912 ~ 28070685 (+) | True | uraha |
| XR_004578358.1 | other | downstream | 432693 | 28146263 ~ 28161869 (+) | False | def8 |
| XR_004578357.1 | other | downstream | 432693 | 28146263 ~ 28161869 (+) | False | def8 |
