RNA id: XM_026914077.2


Basic Information

Item Value
RNA id XM_026914077.2
length 3353
RNA type mRNA
GC content 0.48
exon number 9
gene id si:ch211-136a13.1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25250342 ~ 25266857 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtacatgtggcTGGAGCTCAGACTGTTGAATGAGACGGCCTTGTGCGACTTCAATCTGTTCATTCTCTCTCCACCAGAGCACATATccaatgaaagtgtgtgtgtgcatgtgtgagagcGCTGACAGGCATCCAAGTTAGCCCACAAATAATTGAACAGCTAGAGcagaacacacaccaaaaagGCATTCTTTATAATTTGTACCTTTGCCGGCCAGAACTCCTGTTCTTATTTTGCCATGAGTTTAGTAAGACTCTGGAGAGCTGGGCTTCTCCACTTTCTGATTTGGCTCCTCCTGAGCTTCTTGCATGCAGATGCCCACCCGCAGTGCCTGGACTACAAGCCTCCTTTCCAACCTCAAGAGCCGCTGCGCTTCTGCAAAGAGTATGCCAAGTTTGGCTGCTGCGATTTGGAGCAAGACAAACAGATTTCGTACAGGTTTGAACAAATTATGGACTACTTTGATCATTCTGGATTCATGGTCTGCGGGAAGTACATCCGCAGCATCCTGTGCCAGGAATGTTCTCCTTATGCAGCTCACCTGTACGATGCTGAGGATGCGAATACTCCCATGCGTGAGCTCCCTGGCCTTTGCCGTGACTACTGCTCTGAGTACTGGCATCACTGCCGTTACACACTTAGTCTTCTGACAGACAACAACATAACTGCCATCATTGAGGAGGATCTTGATAAATTCTGTGACTATTTGGAGCTCAAGGATCAAGAGTATTGCTATCCCAATGTTCTTTCCAGTGACGAGTTAAATGCTAACCTGGGCAGCGTTCAAGCCGATCCCAAGGGCTGCATTCAGCTTTGCCTACAGGAAGTAGCAAATGGCCTGCGCAATCCAGTGGCAATGGTGCATGCAAATGACGGCACCCACCGCTTCTTCATAGCTGAGCAGCTGGGATATGTATGGACCTACTTGCCAAATGGCTCAAGGATCGACAGACCCTTCCTAAACCTCACCAAGGCCGTGTTGACCTCACCGTGGGCTGGGGATGAACGTGGATTTCTCTGTATCACCCTGCACCCCAGGTTCAGCGTGGTCAAGAAGGCATATGTCTATTACTCTGTGTCTGTGAACAAGCAGGAGAGGATAAGGATCAGCGAGTTCCTTCTGTCAGACACAGACATGAACATGCTGGATCACTCATCTGAAAgGACCCTTTTGGAAGTTGTGGAGCCAGCATCAAACCACAATGGAGGCCAGCTTCTGTTTGGTTTGGACGGCTACCTTTATGTCTTCATAGGAGATGGAGGCAGAGCAGGAGACCCCTTTGGAAAGTTCGGAAATTCCCAAAACAAATCCACTCTACTAGGCAAAGCTCTACGAATCGATGTGGAAAACAATGATGATGGTGCCCCATACAGTATCCCCTCTGATAACCCTTTCCTTGGTGAGAAAGACTCAAAGCCAGAGATCTACGCCTATGGAGTCAGGAACATGTGGCGCTGCTCCATTGACAGAGGAGACCCGATCACAGGCCAGGGACAGGGTCGCATGTTCTGTGGAGATGTTGGCCAGAACAAGTTTGAGGAAGTTGATATCATTGAAAAAGGGGGCAACTATGGATGGAGGGCAAAGGAAGGGTTCTCCTGTTATGACAAGAAACTCTGTTTAAACTCCTCTTTGGATGACATCCTGCCAATTTTTGCTTATCCACATACAGTTGGGAGGTCAGTGACTGGTGGCTACGTCTACAGGGGCTGTGAGATGCCAAATCTTAATGGTCTCTACATCTTTGGGGATTTCATGAGCGGACGACTCATGTCTCTTAAAGAGAACCCAGACACTGGCAAATGGGACTACACAGAAATATGCATGGGCAAGGACAAGACATGTCGCTTCCCAAGACTGATCAACAGCTACTACAAGTACATCATATCCTTTGGTGAAGATGAGGCAGGTGAGCTATACTTCCTAGCCACAGGAACACCAAGTGCAGCTTCCAGAGGGGGAGTGGTGTACAAGATAGTGGATCCATCCAGGCGAGCACCTCCAGGCAAGTGCAGCATCAAGCCCACTCCTGTCCAGATAAAGGGCAAACTGATTCGCTTCCATCCTAAAACAGAGTTTGTGATtgacaaaaaacccacaaccaCTGCTTCCCCTAAGACCAAAGCACCTACTATACCCAGCACAACCATGGTTCAGGCCACAGCAAGAAAACCAACCACTGCATCTCCAAAGCCAAAATTTAGTGGACCAACTCAGAAACCAAGGACACCTACTCAAAAACCACAGACTCTTGCTCCGAAGCCAACTTTCAAACCGGTAATTACAAAGCCTCCTGTTCTCAGGAGACATCAGTCTCCAACTGGGACAGTGCACCCACTCCTTGACCAGATCACTACAGTGAGGCCACAGTATATCACCACTTTGAAAGTGAAATCAGAAACCACACTTCGTAGGACTCCTCCACCAACCACATTACGTCCATCCATCAAGCAACCACATGCTTCCAGCAACACTCATCCATATTGGACTGCCTCTATAACCACCACCACCAGGCCCATATATTGGACTTCAGCCTCCCTGAAGACATCCCTACCAACAGACAGGCCTGGCAAAAGAGGCAGGGGGAAAGGCAGAAAAAATGGGCAGAGAAGAGGTAAAGGGGTTCGCAGAAGGTCTCGAAGTGGGCAGGTGAGGCTTGTTAGTCCTGATCCAAACCGGTCAGATCGTGGACGAGTGGAAATCCTCGTGAGGGGTGAGTGGGGTACGGTGTGTGATGACCTATTTGACAATAAGGCAGCAGCAGTGGTGTGCAAGCAGCTGGGCTTTGCTAGAGCACTGAGGGTGGCGAAGCCTGGCGAAATGGGACGTGTGGCCACTAACCTCCAAATCCTGCTGGATGATGTGGAATGTGAGGGAACAGAGAGGACACTGCTGCACTGCAAACACGCTGTAGTCGGCAAACACAACTGCTCACATGCGGAGGATGTAGGGGTGGTGTGTAGCTCCGAAGAGGAGCATGCTGTCAAGTGATGACCATTTCCCAGTCTACTCTTGAATCACTGAAAACATTGGTCTCACTCTTGATTTGTTTGTTCGTAAAATGGTGGTGAAATACTTCAGCACCATCAATCTCAGCctaatttttaatacttgcagagaattactttttaaatgaatattgaCAGATAGTGATAATGTTAAAGAATGATAATGCTGTTGTGAGGTCACAGTTTTAAAGGGAGGTGTTGATCATCTCAGACTAAGACAAGGCCAAGATAGctaatgttttgtgtttaataagATTCAAGCAAATTCACCTCTtcagaaaagaaagcaagaaggGAAACACTGCTTAGCCTTTTATATTcaagatgacacacacacacaca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123938 lncRNA upstream 4477 25245664 ~ 25245865 (+) True G104751
TU123930 lncRNA upstream 6464 25243481 ~ 25243878 (+) True G104748
TU123921 lncRNA upstream 7037 25242800 ~ 25243305 (+) True G104739
TU123920 lncRNA upstream 10886 25233643 ~ 25239456 (+) False LOC113526839
TU123680 lncRNA upstream 141376 25013112 ~ 25108966 (+) True G104522
TU123977 lncRNA downstream 28042 25294899 ~ 25304404 (+) False G104781
TU123980 lncRNA downstream 28042 25294899 ~ 25304404 (+) False G104781
XR_004578347.1 lncRNA downstream 73766 25340623 ~ 25342308 (+) True LOC117597584
TU124338 lncRNA downstream 636969 25903826 ~ 25905288 (+) True G105118
TU124552 lncRNA downstream 1053152 26320009 ~ 26323500 (+) True G105320
XM_026914236.2 mRNA upstream 10129 25233625 ~ 25240213 (+) True LOC113526839
XM_026913562.2 mRNA upstream 95243 25140152 ~ 25155099 (+) True hnrnpul1
XM_034305166.1 mRNA upstream 110781 25137014 ~ 25139561 (+) True opa3
XM_026913986.2 mRNA upstream 210253 25035517 ~ 25040089 (+) False exosc5
XM_026913987.2 mRNA upstream 211665 25035513 ~ 25038677 (+) True exosc5
XM_026914471.2 mRNA downstream 2036 25268893 ~ 25282220 (+) True yif1b
XM_034305489.1 mRNA downstream 2036 25268893 ~ 25281629 (+) False yif1b
XM_026914476.2 mRNA downstream 2036 25268893 ~ 25281629 (+) False yif1b
XM_034305490.1 mRNA downstream 2036 25268893 ~ 25281629 (+) False yif1b
XM_026914473.2 mRNA downstream 2036 25268893 ~ 25281629 (+) False yif1b
TU122935 other upstream 1508027 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 1620619 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 1975833 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 1976884 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 1978134 23272058 ~ 23272208 (+) True LOC113527010
TU123976 other downstream 28042 25294899 ~ 25306811 (+) True G104781
TU123982 other downstream 28042 25294899 ~ 25315213 (+) False G104781
TU124829 other downstream 1564121 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 1944532 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 2291979 27558836 ~ 27558946 (+) True trnal-caa_8

Expression Profile