RNA id: XM_026914098.2


Basic Information

Item Value
RNA id XM_026914098.2
length 2031
RNA type mRNA
GC content 0.45
exon number 15
gene id treh
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20097695 ~ 20115417 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGCTACTCCATGGAGTTGCACAGCAGACACACTTGAAAGATTGTTTCTGGCTGAAGAATTCATAGTTTAATAGAATGTTCTGGCTATCTGGGGGGatcacctttctttttttatgtcatgGAGCTGCTCTTCCTCCACCTTGTGACAGTGAGATCTACTGCACAGGAGAGCTGTTAAGACAGGTACAGATGGCCAAACTGTTTGATGACAACAAGGCCTTTGTGGATATGAAATTGACTGCAGCACCTGATATTGTTTTAGATGCCTTCTCCAACCTAACACAAAAGTTTCCAAATGGGACTGTTCCTCATTCAGCTCTACAAGAGTTTGTGAATACGTACTTTGCGAATAGTGGGAAAGAGTTTGAACCGTGGAGTCCTCCAGACTGGCATGACAAACCAAAATTGCTGTCCAAGATATCTGACGCAAAACTTCGCAGCTGGGCTGAGGAGTTGCACGGTTTGTGGAAATCACTTGGCCGAAAGATCAGTAATGATGTGAGAGACAATCCTCAAATGTATTCTATGATATACTGTCCATATCCAGGCATTGTACCAGGCGGACGCTTCACTGAGTTTTACTACTGGGACTCATATTGGGTGCTAAATGGTCTCATATTATCTGAAATGATGGAAACAGCCAAAGGAATGATCCAAAACTTCCTACACATGGTGGACAGGTATGGTTTTGTACCAAATGGAGGGAGAATTTACTATGAGCGACGCAGCCAGCCACCCTTCCTACCACTAATGGTGGAGAGTTACTATGAGGCCACTAAAGACGTAGAATTTCTCAGAAAGGCTTTACCGTTGTTGGAAAATGAGTACAGTTTTTGGATGGGGAAACGCTCCATTGTCGTGGAAGTGAATAGCGTCAAGCATGTCATGAATCGTTATTATGTACAAGTCGGTCAGCCCAGGCCAGAATCTTATACACATGATGCAGAGCTGGCAGAGGGCTTACCTGCAGAGGCTCAGGAGAAGCTGTGGACAGAACTGAAAGCAGGAGCCGAGTCTGGTTGGGATTTTTCCTCACGCTGGTACATTAACAACTTGGGCCAAAACAATGGCTCATTCGGGGACACGAGGACCAGCTCCATCGTGCCTGTCGACCTCAATGCTCTCATTTGTCGCAATGAGCGTGTCCTGGCCACCTTCCACAGAATTCTGGGTGATGAGGAAAGGGCACGTGTATATGACAGTGCAGTCTCTTTGAGGCTGAAGGCTATAGAGAGTGTTCTATGGGATGCAGAGAAAGGAGCGTGGTTTGATTATAACTTGTTGAGTGGGACCAGGAATTCAGCCTTCTATCCAACTAACCTAAGTCCTCTCTGGGCACGGTGTTATTCTCAGCCTGAGATGGGACAGCAGGCACTACAGTATCTCAGAGGGAGTGGTGCGCTGGACTACCCCAATGGTGTTCCCACCTCTCTGAGTCAGAGTGGCCAGCAATGGGACATGCCTAATGCCTGGCCTCCACTCCAGCACATGCTCATAGAGGGTCTGTCACAGCTTGACTCGACAGATGCCAAAGATCTTGCCTCTGATTTGGCTCAACAGTGGATTCATACAAATTGGCTGGCTTATGTTAAATATGATGCCATGTTTGAAAAGTATGATGTCAGTGGAGATGGCAAACCCGGAGGAGGTGGTGAATATGAAGTTCAGCTGGGGTTTGGATGGACAAATGGTGCTGCTCTACAGCTGCTGGACCAGTATGGAAATAAGCTGACCTCTGGGGGAAGTGTCCTAGGTTCTGGCCTTCAGATTGGACTAATTTACCCAAttgtaaatgccatattttacTATGCACCATTCTGGTAGTTATATTTGGAAAAAGGACATCTTGGATATTAGAATTTTAGAATTCCATTGAAGTCAATATGCTTGTTTGCTCTGGTTGTCTTGAATAGTCATTGCAATAACTCTATTGTGTTAGGACTGCAAGATTATCATTACAACTCTTAAAAAGCTATCACTACAAATCCGGtgatcaaaataaatgaaaatcatgGTGTATTTTAGCATTA

Function

GO: NA

KEGG:

id description
K01194 TREH, treA, treF; alpha,alpha-trehalase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120935 lncRNA upstream 4906 20092399 ~ 20092789 (+) False ddx6
TU120875 lncRNA upstream 42463 20055032 ~ 20055232 (+) True G102124
TU120855 lncRNA upstream 45013 20052310 ~ 20052682 (+) False bcl9l
TU120859 lncRNA upstream 98021 19999392 ~ 19999674 (+) True G102108
TU120857 lncRNA upstream 99612 19997871 ~ 19998083 (+) True G102106
TU121062 lncRNA downstream 280450 20395867 ~ 20397389 (+) True G102285
TU121063 lncRNA downstream 280450 20395867 ~ 20399958 (+) False G102285
TU121065 lncRNA downstream 306604 20422021 ~ 20424905 (+) False G102286
TU121067 lncRNA downstream 306604 20422021 ~ 20430288 (+) True G102286
TU121064 lncRNA downstream 344844 20460261 ~ 20461015 (+) False G102286
XM_026914147.2 mRNA upstream 4763 20076965 ~ 20092932 (+) True ddx6
XM_026913609.2 mRNA upstream 44553 20004358 ~ 20053142 (+) False bcl9l
XM_026914235.2 mRNA downstream 242796 20358213 ~ 20360195 (+) True ttc36
XM_026914159.2 mRNA downstream 457864 20573281 ~ 20629325 (+) False trip12
XM_026914157.2 mRNA downstream 457899 20573316 ~ 20629325 (+) False trip12
XM_026914160.2 mRNA downstream 457915 20573332 ~ 20629325 (+) False trip12
XM_026914156.2 mRNA downstream 458426 20573843 ~ 20629325 (+) False trip12
TU120293 other upstream 973818 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 976569 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 1303422 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 1357697 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 1498320 18598714 ~ 18599375 (+) True G101419
XR_003402807.2 other downstream 910610 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 1671699 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 2837260 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 3047690 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 3156641 23272058 ~ 23272208 (+) True LOC113527010

Expression Profile