RNA id: XM_026914105.2


Basic Information

Item Value
RNA id XM_026914105.2
length 2985
RNA type mRNA
GC content 0.54
exon number 18
gene id pdpr
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27902771 ~ 27918148 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACTACATAGGGAACCTTTGGGATTCACACGATGGTTGAACACTTGAACAGGGGCGCTGGATTTTCTCATATCAGCCTGCAGAGGAAAAGAAGAGCTAAAGTCCATTATTAATGACTACAGCAGGATCATTATCTAGAGACATGTAACACTAAGTACCTAGCAACAAGACTAATTCAACTCCGGGTTAAAAGTCTCAGCTTTCATCTGTCATCTAGttataaatcataataatagaGGGTAAAAGTAACGCTAAACggaaaaaaatattctgtttggAGTTGGAGCGGGTGAACCAGGTGCCATGCGTGGCTGTGTGTGGAGCTTTCGAGCTCTGTCCCCAGCCCTGCTCCCTCTGCTCCTCTCCCGCTCTCGGTGCTGTAGAACCCGAGCGGTCTGCCATGGCCTTTGGGGCTCGGTCCAGTTTCTCAGCACGGCTCCGGAAGCCCAGGGCGCGCCTCTACCCAGCCAGGCCCGAGTCGTGATCTGTGGCGGGGGAATTGTGGGAACCTCCGTCGCCTATCATCTGGCGAAGTTAGGCTGGACGGAGGTTGTGCTTCTAGAGCAGGGGAGaCTCGGAGCTGGCACGACTCGGCTGTGTGCGGGGATAGTAAGTGTTGCCAAACCCATTTTTATTGAGAGCCAGATGGCAGACTACTCGAATGCCCTGTATGAGAGTTTGGAGCGGGAGACTGGAGTCAAAACAGCTTTTGCCAGGACGGGATCACTGTGTTTGGCTCAGAATCAGGACCGTTTCCTCTCACTGAAGCGTCTGGCATCCAGACTCAACGTTTTGGGTATAGCCTGTAACATCATCAAACCCAAAGAGGTTTCCAAGCTTCACCCCTTGGTGAACATTCATGACTTGGTGGGCGCTCTCCACCTGCCGGGAGACGCCGTGGTGTCGCCTCCAGACGTCAATCACGCCCTGGCAGTGGCAGCAGCAAGGCACGGAGTCCAGATCCATGAACGAACCAGCGTAAACCACGTTCTTGTGGAAAAGGGTCACGTCAAAGCAGTGGAGACGGACCGAGGCGCCATTGAGTGCGAGTACTTTGTCAACTGTGCTGGACAGTGGGCGTATGAACTCGGCCAGAGCAGTGAAGTGAAAGTGTCTGTGCCTCTACACGGCTGTGAACACTTCTACCTCCTCACTAAACCTCTACAGGAACCTCTGCAACCCACAACACCAGTGGTGATGGATATGGATGGGAGGATTTATATACGGAGCTGGCAGGGTGGCGTTCTCTCTGGAGGCTTCGAGAAGAATCCCAAACCCATCTTTACTGAGGGCCGCAATCAGCTGGAGATCCAAAACATGCAGGAGGACTGGGACCATTTCGAGCCCATGTTGAGCGCCCTGCTGAGGAGAATGCCGAGCCTGGACTCGTGCGAGATCCATCAGCTGGTGAACTGTCCTGAGTCCTTCACCCCAGACATGCGCTGCCTCATGGGCGAGACTCCAGGAGTGCACGGCTACTTTGTCCTGGCAGGCATGAACTCCTCGGGTCTGTCTTTTGCAGGAGGGGCTGGCAAATATTTGGCCGAATGGATGACTTATGGCTATCCAAGTGCCAACGTTTGGCCTCTGGACATCAAGCGCTTCGGTAATCTGCAGAGCAGTCGCACGTTCCTGCGTCATCGTGTGATGGAGGTCATGCCACTTCTGTATGAGCTGAAAGTGCCAAGATGGGACTTCCAGACGGGCAGACAGCTGCGCACCAGCCCCCTTTATGACCGTCTGGACACGCAGGGGGCTCGCTGGATGGAAAAGCATGGCTTTGAGAGGGCCAAATACTTTGTTCCTCCGGGAAAGGATTTGCTGGCCCTGGACCAGAGTAAAACCTTCTACAAGCCGGACTGGTTTGACATTGTTGGTGCTGAGGTGAAGTGCTGTAAGGAGGCGGTGTGTGTCATCGACATGTCCTCCTTCACCAAGTTTGAGCTCACATCGTCCGGGGACCAGGCCTTGGAGCTGCTCCAGCGGCTGTGTGCTAATGACCTGGATGTTCCCGTAGGACACATCGTCCACACAGGCATGCTCAACGAGAGAGGGGGATACGAGAATGACTGCAGCGTGGTACGCCTGAGCAAGAACAGTTTCTTCATCATCTCGCCTACagatcagcaagtgcattgttGGTCTTGGATTAAGAGACACATGCCCAGTGACCCACAGCTCCACCTAGAGGACGTCAGCTGGAAATACACTGCTCTTAATCTGATTGGTCCTCGGGCGATGGACGTGCTGTCTGAGCTCTCCTATGTCTCTATGACTCCGGAGCATTTTCCCTCTCTGTTTTGTAAGGAAATGAGTGTGGGCTACGCTAATGGAATCAGAGTAATGAGTATGACTCATACAGGAGAGCCAGGCTTCATGCTGTACATCCCTATAGAGTACGCACTGCACGTGTATAACGAGGTCATGTCGGTGGGTCAGAAGTACGGCATCCGTAACGCAGGCTACTACGCCCTGCGCAGCCTGCGCATCGAGAAGTTCTTCGCCTTCTGGGGACAGGATCTGGACTCGTTCACGACGCCCCTCGAATGCGGTCGCGAGTTTCGCGTCAAATTCGACAAGGACACAGATTTCCTGGGCAGGGAGGCTCTGTTGCAGCAGCGGCAGGAAGGAGTGACGCGCCGCTTCATCATGCTGGTCCTGGAGGATCACGACGCCGAGCTGGACCTGTGGCCGTGGTGGGGCGAAGCCATTTACCGTAACGGAGAACTGGTGGGTGTGACCACTAGCAGCGCCTACAGCTACACGCTGGAGCGCCACGTGTGTCTGGGTTTCGTCAGCTCACCCGGCGCACACGGCGGCGCCAAAGTCATCACGCCCGACTTCATCAACCGCGGCGATTATGAAGTGGACATCGCCGGACACAGATACCCAGCCAAGGCCAAGCTTTACCCGTTCAGCTCGCTCTTCGCCCAGCAGAGACGGCGCAAAGAGGACGTGGAGCTTAGCAACTTTCAGGGCAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125500 lncRNA upstream 173610 27726402 ~ 27729161 (+) True G106118
TU125432 lncRNA upstream 300037 27602158 ~ 27602734 (+) True G106064
TU125360 lncRNA upstream 357254 27543059 ~ 27545517 (+) False ddx11
TU125340 lncRNA upstream 404141 27498431 ~ 27498630 (+) True G105981
TU125251 lncRNA upstream 668547 27229784 ~ 27234224 (+) True G105904
TU125760 lncRNA downstream 181789 28097729 ~ 28098001 (+) True G106343
XR_004578326.1 lncRNA downstream 317867 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA downstream 317867 28233807 ~ 28244868 (+) False LOC117597547
TU125917 lncRNA downstream 474258 28390198 ~ 28450197 (+) True G106477
XR_003402825.2 lncRNA downstream 514063 28430003 ~ 28448635 (+) True LOC113526961
XM_026914289.2 mRNA upstream 11511 27889761 ~ 27891260 (+) True LOC113526868
XM_026913763.2 mRNA upstream 39353 27860028 ~ 27863418 (+) True nip7
XM_026914112.2 mRNA upstream 48006 27846818 ~ 27854765 (+) True nob1
XM_026914063.2 mRNA upstream 189201 27710176 ~ 27713570 (+) True gcsha
XM_026913412.2 mRNA upstream 305852 27562467 ~ 27596919 (+) False iqsec3b
XM_026914227.2 mRNA downstream 28850 27944790 ~ 27966308 (+) False LOC113526832
XM_026913512.2 mRNA downstream 74624 27990564 ~ 28063149 (+) True LOC113526465
XM_026913513.2 mRNA downstream 86368 28002308 ~ 28063149 (+) False LOC113526465
XM_026914079.2 mRNA downstream 150942 28066882 ~ 28070628 (+) False uraha
XM_034305052.1 mRNA downstream 150958 28066898 ~ 28070628 (+) False uraha
trnal-caa_9 other upstream 342274 27560387 ~ 27560497 (+) True trnal-caa_9
trnal-caa_8 other upstream 343825 27558836 ~ 27558946 (+) True trnal-caa_8
TU125244 other upstream 688201 27211389 ~ 27214570 (+) True G105898
TU124829 other upstream 1069344 26830978 ~ 26833427 (+) True G105569
TU123982 other upstream 2587558 25294899 ~ 25315213 (+) False G104781
XR_003402810.2 other downstream 28850 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other downstream 43585 27959525 ~ 27961771 (+) False LOC113526832
TU125683 other downstream 150972 28066912 ~ 28070685 (+) True uraha
XR_004578358.1 other downstream 230323 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other downstream 230323 28146263 ~ 28161869 (+) False def8

Expression Profile