RNA id: XM_026914106.2


Basic Information

Item Value
RNA id XM_026914106.2
length 4890
RNA type mRNA
GC content 0.47
exon number 17
gene id pdpr
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27902771 ~ 27918148 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCGTGGCTGTGTGTGGAGCTTTCGAGCTCTGTCCCCAGCCCTGCTCCCTCTGCTCCTCTCCCGCTCTCGGTGCTGTAGAACCCGAGCGGTCTGCCATGGCCTTTGGGGCTCGGTCCAGTTTCTCAGCACGGCTCCGGAAGCCCAGGGCGCGCCTCTACCCAGCCAGGCCCGAGTCGTGATCTGTGGCGGGGGAATTGTGGGAACCTCCGTCGCCTATCATCTGGCGAAGTTAGGCTGGACGGAGGTTGTGCTTCTAGAGCAGGGGAGaCTCGGAGCTGGCACGACTCGGCTGTGTGCGGGGATAGTAAGTGTTGCCAAACCCATTTTTATTGAGAGCCAGATGGCAGACTACTCGAATGCCCTGTATGAGAGTTTGGAGCGGGAGACTGGAGTCAAAACAGCTTTTGCCAGGACGGGATCACTGTGTTTGGCTCAGAATCAGGACCGTTTCCTCTCACTGAAGCGTCTGGCATCCAGACTCAACGTTTTGGGTATAGCCTGTAACATCATCAAACCCAAAGAGGTTTCCAAGCTTCACCCCTTGGTGAACATTCATGACTTGGTGGGCGCTCTCCACCTGCCGGGAGACGCCGTGGTGTCGCCTCCAGACGTCAATCACGCCCTGGCAGTGGCAGCAGCAAGGCACGGAGTCCAGATCCATGAACGAACCAGCGTAAACCACGTTCTTGTGGAAAAGGGTCACGTCAAAGCAGTGGAGACGGACCGAGGCGCCATTGAGTGCGAGTACTTTGTCAACTGTGCTGGACAGTGGGCGTATGAACTCGGCCAGAGCAGTGAAGTGAAAGTGTCTGTGCCTCTACACGGCTGTGAACACTTCTACCTCCTCACTAAACCTCTACAGGAACCTCTGCAACCCACAACACCAGTGGTGATGGATATGGATGGGAGGATTTATATACGGAGCTGGCAGGGTGGCGTTCTCTCTGGAGGCTTCGAGAAGAATCCCAAACCCATCTTTACTGAGGGCCGCAATCAGCTGGAGATCCAAAACATGCAGGAGGACTGGGACCATTTCGAGCCCATGTTGAGCGCCCTGCTGAGGAGAATGCCGAGCCTGGACTCGTGCGAGATCCATCAGCTGGTGAACTGTCCTGAGTCCTTCACCCCAGACATGCGCTGCCTCATGGGCGAGACTCCAGGAGTGCACGGCTACTTTGTCCTGGCAGGCATGAACTCCTCGGGTCTGTCTTTTGCAGGAGGGGCTGGCAAATATTTGGCCGAATGGATGACTTATGGCTATCCAAGTGCCAACGTTTGGCCTCTGGACATCAAGCGCTTCGGTAATCTGCAGAGCAGTCGCACGTTCCTGCGTCATCGTGTGATGGAGGTCATGCCACTTCTGTATGAGCTGAAAGTGCCAAGATGGGACTTCCAGACGGGCAGACAGCTGCGCACCAGCCCCCTTTATGACCGTCTGGACACGCAGGGGGCTCGCTGGATGGAAAAGCATGGCTTTGAGAGGGCCAAATACTTTGTTCCTCCGGGAAAGGATTTGCTGGCCCTGGACCAGAGTAAAACCTTCTACAAGCCGGACTGGTTTGACATTGTTGGTGCTGAGGTGAAGTGCTGTAAGGAGGCGGTGTGTGTCATCGACATGTCCTCCTTCACCAAGTTTGAGCTCACATCGTCCGGGGACCAGGCCTTGGAGCTGCTCCAGCGGCTGTGTGCTAATGACCTGGATGTTCCCGTAGGACACATCGTCCACACAGGCATGCTCAACGAGAGAGGGGGATACGAGAATGACTGCAGCGTGGTACGCCTGAGCAAGAACAGTTTCTTCATCATCTCGCCTACagatcagcaagtgcattgttGGTCTTGGATTAAGAGACACATGCCCAGTGACCCACAGCTCCACCTAGAGGACGTCAGCTGGAAATACACTGCTCTTAATCTGATTGGTCCTCGGGCGATGGACGTGCTGTCTGAGCTCTCCTATGTCTCTATGACTCCGGAGCATTTTCCCTCTCTGTTTTGTAAGGAAATGAGTGTGGGCTACGCTAATGGAATCAGAGTAATGAGTATGACTCATACAGGAGAGCCAGGCTTCATGCTGTACATCCCTATAGAGTACGCACTGCACGTGTATAACGAGGTCATGTCGGTGGGTCAGAAGTACGGCATCCGTAACGCAGGCTACTACGCCCTGCGCAGCCTGCGCATCGAGAAGTTCTTCGCCTTCTGGGGACAGGATCTGGACTCGTTCACGACGCCCCTCGAATGCGGTCGCGAGTTTCGCGTCAAATTCGACAAGGACACAGATTTCCTGGGCAGGGAGGCTCTGTTGCAGCAGCGGCAGGAAGGAGTGACGCGCCGCTTCATCATGCTGGTCCTGGAGGATCACGACGCCGAGCTGGACCTGTGGCCGTGGTGGGGCGAAGCCATTTACCGTAACGGAGAACTGGTGGGTGTGACCACTAGCAGCGCCTACAGCTACACGCTGGAGCGCCACGTGTGTCTGGGTTTCGTCAGCTCACCCGGCGCACACGGCGGCGCCAAAGTCATCACGCCCGACTTCATCAACCGCGGCGATTATGAAGTGGACATCGCCGGACACAGATACCCAGCCAAGGCCAAGCTTTACCCGTTCAGCTCGCTCTTCGCCCAGCAGAGACGGCGCAAAGAGGACGTGGAGCTTAGCAACTTTCAGGGCAAGTAAGGGATTAAAGTACGGCTCGGAATAAATAGACCTCAcctttgtggtttttttttccctatatgATCCACAATCAGcgctgtttttttcttactttgctTCCTATGTGCAATACACATCATCATATGTGCAGTAGAATTAATGTTTGTCAGAGTTTATCAGTCCTGTCCTCTGGAACGCCAGCGTTCTCTCTCCAAAGCACATCAATCCGCATTGCACAACCGTCACTATCTGCTCAGGTGTGTTTGGAGGTGAACCAGCTGACGGTCTGAGGACTGGATTGAGAATCTTCTCTATGTTATACTACAAGACTGTAATATAgcctcatttttttgttttcttttcccccctctACTGAACAGTGTGTTGTCTTTGTGAGTCTGCCTTGCTTTAAAAGGAATACAGAAACAGTAGTGGGTGAAAAGGATATTCCGTCCTTTTATCAGCACAGGGAAATGTCACATTTCTTGTCCATGGCTATCGCACATGAGCTAGAGAGCACAGTAGATGGAGATTAGAATGAAAAATGTTGGACTACTCCTTTAAATAATCCGTCCTGTGAACTGATAATGTCTTTACTTTCTGCCTGACAGAAATGCTCTTCTGCTCTGGTGCAGCAGTTTATGGTTCAAATGGTTAAGtctcatttttctttataaCCCTGATACCCTCTGACAATCGAATTCGAATCATTAAGAATCGGTGTCTGAGGCGTTTGTGGTGTTGCACACAACGAGAGACAGGGTGCCATTTATCGTAATATTCAGACGTGTTTTCACAATCTCCAAGCcattttgaaaatgtcaaatacagaaatgtatttttatatatatagtgtacaAAATACCCTTTTGGAATGAAGAGTAGTGTATATAGAGCACGTTTGTGCAAAATGGCTGTTCATATCTAAATCCGTTGCCTGACTGATGCACTTCAGTACAGCATTATAATGCATCGTAGCGCTCTTTGTTGGGACTGAAGCACTGTTGTGAagtctgaagtgtttttaatACTGAATGGTGTATTTACTATTGTTGCACAGCACAGTGAAGGTGAAATGTTCAGTTAAAGAACTGAGGAAAATCTCAGTTGGCTAAATGTCATATATGTGCATTGAAGTCTGGCTTTTATcgcacttttttttgtaatctttaTTACATACACTTCCAGATACAACTATTTCATTATGACAATGAAGAGTCACTTAATCaatgtctctctgtttttctctctgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagacattTCTACACAAGTGGTAGGTTTGTATATAAATGATGATAACACTGCACTGTCAGGactttattataaattttttttccatcattttttcctcatcattGTTATAAATCTCTGATCATTttgaatattacatttaaaagaataaaaattcaGATGGCAGTGTAaatcttaaatttttttgcaacatttgTAAGTTTCTTATCTCTATTTGTTTCCCAGTTAAACATGGGTGAAAAGCGCTAAATGACCTTTCAAATTTGGTAACTTTTGTGACACCgttgtgtgcaaaagtttgtatcccctTAGGACGTCATGAAGAATGTAATTTATAGGTGCTAGGTTTCATAGCTCTTTCTTCACTTAAACAAGCAGCAAATATCGTCCAACAGTGCATTTTAAGACAGTCTCCCTTTCtgaatacaatataaatattctctaataacttgCAGCTCTTTATAACTTCCTCCAActcctctgtttttctgttgacTTTTGTCTCGTGGTTAGATTGTTGtcttgatttcatttttgacattttggaatgttgtgttttgcagataaattgtaaaatctgAGGTACggtttcacatttttttccacccagACTCCatggggtgtgcaaacttttgctctcAGCTGTAAGTAAACACACCCAGGAGAGTGTTtggtatacagtatgtgttggctttgtttgatgtgtgttgtgtaattgaGAAGGGATTTGTGATACATTATTGAGTGCAGAATAACCTGTTCATCATTCTACTgtaaatttgaaaatatttggaaaattgagctgtaaagaaataaaactggTTGTCATTAGCACACAGAGAGTGTTGGACACACTGTTTACGTCTGtactctttttgttttttggctgCTCTAACGTACATATCATTAAACTCCTGTTCCTTTCGTCTTTTTAAA

Function

GO: NA

KEGG:

id description
K17509 PDPR; pyruvate dehydrogenase phosphatase regulatory subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125500 lncRNA upstream 175270 27726402 ~ 27729161 (+) True G106118
TU125432 lncRNA upstream 301697 27602158 ~ 27602734 (+) True G106064
TU125360 lncRNA upstream 358914 27543059 ~ 27545517 (+) False ddx11
TU125340 lncRNA upstream 405801 27498431 ~ 27498630 (+) True G105981
TU125251 lncRNA upstream 670207 27229784 ~ 27234224 (+) True G105904
TU125760 lncRNA downstream 179581 28097729 ~ 28098001 (+) True G106343
XR_004578326.1 lncRNA downstream 315659 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA downstream 315659 28233807 ~ 28244868 (+) False LOC117597547
TU125917 lncRNA downstream 472050 28390198 ~ 28450197 (+) True G106477
XR_003402825.2 lncRNA downstream 511855 28430003 ~ 28448635 (+) True LOC113526961
XM_026914289.2 mRNA upstream 13171 27889761 ~ 27891260 (+) True LOC113526868
XM_026913763.2 mRNA upstream 41013 27860028 ~ 27863418 (+) True nip7
XM_026914112.2 mRNA upstream 49666 27846818 ~ 27854765 (+) True nob1
XM_026914063.2 mRNA upstream 190861 27710176 ~ 27713570 (+) True gcsha
XM_026913412.2 mRNA upstream 307512 27562467 ~ 27596919 (+) False iqsec3b
XM_026914227.2 mRNA downstream 26642 27944790 ~ 27966308 (+) False LOC113526832
XM_026913512.2 mRNA downstream 72416 27990564 ~ 28063149 (+) True LOC113526465
XM_026913513.2 mRNA downstream 84160 28002308 ~ 28063149 (+) False LOC113526465
XM_026914079.2 mRNA downstream 148734 28066882 ~ 28070628 (+) False uraha
XM_034305052.1 mRNA downstream 148750 28066898 ~ 28070628 (+) False uraha
trnal-caa_9 other upstream 343934 27560387 ~ 27560497 (+) True trnal-caa_9
trnal-caa_8 other upstream 345485 27558836 ~ 27558946 (+) True trnal-caa_8
TU125244 other upstream 689861 27211389 ~ 27214570 (+) True G105898
TU124829 other upstream 1071004 26830978 ~ 26833427 (+) True G105569
TU123982 other upstream 2589218 25294899 ~ 25315213 (+) False G104781
XR_003402810.2 other downstream 26642 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other downstream 41377 27959525 ~ 27961771 (+) False LOC113526832
TU125683 other downstream 148764 28066912 ~ 28070685 (+) True uraha
XR_004578358.1 other downstream 228115 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other downstream 228115 28146263 ~ 28161869 (+) False def8

Expression Profile