RNA id: XM_026914143.2


Basic Information

Item Value
RNA id XM_026914143.2
length 1601
RNA type mRNA
GC content 0.48
exon number 10
gene id mvda
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28080997 ~ 28088425 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGATGTCATATCATGGCGAcctaaatgtctgtgtgtagtaATTCTTGCTCGCAGGTGCCTGCTGAGGTTGGTGATTGTTTTGTAAAACGTTTTTGCAGggttacattttaatttaactataaatttAAGTATAAATATGCCGGAGACGAGCCAGAATGTCTCGATGATCACGTGCACGGCGCCAGTAAACATTGCTGTTATTAAGTACTGGGGTAAACGGGATGAAGAGCTGATTCTGCCCATTAATTCCTCACTCAGTGTCACTCTGCATCAGGACCAGCTTAAAACGACCACCACAGTCGCGTGCAGCAGAAATTTTCAGGAGGACCGGATCTGGCTGAATGGCAAAGAAGAGGACATCAACCAGCCGAGACTGCAGTCATGTCTTCGCGAGATCCGAAGGTTAGCACGGAAAAGACGGAATGACGAAGACCCTAATGCCGAGGTCACGCTTTCTCATCGGGTGCATATCTGCTCTGTGAATAACTTCCCGACAGCAGCTGGGCTGGCGTCCTCTGCAGCTGGATATGCCTGCCTGGtGTACTCGCTGTCCCGTTTGTTCGGCGTGGACGCAGACCTGTCGGTGGTGGCACGCCAGGGTTCGGGCAGCGCCTGCAGAAGTATGTATGGGGGCTTTGTGCAGTGGAAGATGGGCGAAAGACAGGACGGGAAAGACAGCGTGGCCGAGCAGGTGGCACCGGAGACACACTGGCCGGAGCTCCGGGTTCTCGTCCTAGTAGTCAGTGCAGAGCGGAAGCCTGTTGGAAGCACTTCAGGCATGCAGACGAGCGTGCAGACGAGCAAACTGCTGAAGCACCGTGCAGACAGCGTGGTCCCCGCTCGGATGGACGACATGATCAGGGCCATTCATGGGCAAGACTTCGCCACGTTCGCTGAACTCACCATGAAAGATAGCAACCAGTTTCACGCCACCTGCCTGGACACCTTCCCACCCATATTCTACCTCAACGACACTTCCCGCAAAGTCATCAACCTGGTGCATCGCTACAATCAACACTACCGAGAGACCAGAGTGGCGTACACTTTTGATGCAGGCCCTAATGCGGTGATCTACCTCCTACAAGACAACGTGCCTGAATTTGTCCAGGCTGTTCGGCATTTCTTCCCTCCGGAATCCAACGGCGGAGAGTTTGTAAAAGGACATCCTGTGCCCTCCGCCTCGCTGTCTGATGAGCTGATAAGAGACATCGGCATGGAACCAACGCCAAGAGGCATCAGCTACATCATCAGCACTAAGGTTGGCCCCGGTCCTTGTGCAGTGGACGATCCAACGCTTCACCTGTTAGGTGCAGATGGACTTCCCAAGAAATCTACCTGAGTGTTAATGGACTCAGTGCAGAATATCGAACTTCCtcagaataaaaaaagcaatgaaGATATAACTGATTTAAACcaagagttattattattattattattattattattattattattattattactgaacaCTTTTGTGTCCAGATTTTGTACCATCTTGTGTATTGACttctatttacattcatttttgtgTAGATTTCTTAAGTATATTTTTCTAGTTTTGAAAAATTGCTATttgaaaatacatttattgATGGCA

Function

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0004163 diphosphomevalonate decarboxylase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01597 MVD, mvaD; diphosphomevalonate decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125500 lncRNA upstream 351836 27726402 ~ 27729161 (+) True G106118
TU125432 lncRNA upstream 478263 27602158 ~ 27602734 (+) True G106064
TU125360 lncRNA upstream 535480 27543059 ~ 27545517 (+) False ddx11
TU125340 lncRNA upstream 582367 27498431 ~ 27498630 (+) True G105981
TU125251 lncRNA upstream 846773 27229784 ~ 27234224 (+) True G105904
TU125760 lncRNA downstream 9304 28097729 ~ 28098001 (+) True G106343
XR_004578326.1 lncRNA downstream 145382 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA downstream 145382 28233807 ~ 28244868 (+) False LOC117597547
TU125917 lncRNA downstream 301773 28390198 ~ 28450197 (+) True G106477
XR_003402825.2 lncRNA downstream 341578 28430003 ~ 28448635 (+) True LOC113526961
XM_026913309.2 mRNA upstream 2110 28071684 ~ 28078887 (+) True pdcd5
XM_026913310.2 mRNA upstream 2110 28071715 ~ 28078887 (+) False pdcd5
XM_026914079.2 mRNA upstream 10369 28066882 ~ 28070628 (+) False uraha
XM_034305052.1 mRNA upstream 10369 28066898 ~ 28070628 (+) False uraha
XM_026914080.2 mRNA upstream 10369 28066902 ~ 28070628 (+) False uraha
XM_026914364.2 mRNA downstream 953 28089378 ~ 28095826 (+) True LOC113526918
XM_026914374.2 mRNA downstream 9971 28098396 ~ 28114961 (+) True tcf25
XM_026914242.2 mRNA downstream 30599 28119024 ~ 28123920 (+) True mc1r
XM_034305483.1 mRNA downstream 30599 28119024 ~ 28123920 (+) False mc1r
XM_026914241.2 mRNA downstream 45417 28133842 ~ 28141732 (+) True LOC113526844
TU125683 other upstream 10312 28066912 ~ 28070685 (+) True uraha
XR_003402810.2 other upstream 114689 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other upstream 119226 27959525 ~ 27961771 (+) False LOC113526832
trnal-caa_9 other upstream 520500 27560387 ~ 27560497 (+) True trnal-caa_9
trnal-caa_8 other upstream 522051 27558836 ~ 27558946 (+) True trnal-caa_8
XR_004578358.1 other downstream 57838 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other downstream 57838 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other downstream 57838 28146263 ~ 28161869 (+) False def8

Expression Profile