RNA id: XM_026914160.2


Basic Information

Item Value
RNA id XM_026914160.2
length 6431
RNA type mRNA
GC content 0.54
exon number 43
gene id trip12
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20573281 ~ 20630604 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTCGCGTGCTGTTGCTGGTAGACACACAATAACAGCCCTTGACTCGTTTCTTGACAGCGTCGCGTACATTTTGAGGTGAATTCTAGATTATTTCccccaaaataaaacacacgtCGCACTTGTCGTTCTAGGCTGCCGGTTGGGGCATTTGCACACGGCTGTGAATGGTAGTGTCTATAAAGGGTATGTCCCTTCAGGAGAGAGGTGCCAATGTCCATCAGGATTAATCACACTGCAGGGGGGTCACTGCGCCGATCACAGAGGAACACACTCGCCACCAGGTTGCAGTCagaacaaaccaaacaaaaaacaaattccCCTCCTGAAAGTAGAAGATCATATACTAAAGCTTCCAAAGCCCCGCCCACGCCTGCAGCTGGCTCCTCGCGTGGCCACGCCCCTCGAAGaaacagtctttctctctcttcactcagtcactctgcGTCTGACCCGGATTCGGAGGCAGCAGGAAGCTCAGGCCAACACGAGCAGCGAGAAGTCAGCAACAACCGTGCCCTCAAACGTAGCTCTGCGCCTGATCACAACAACACCTCCTACTCACCCAGCCCGGCCAAGCGGCCCAAAGCTCCGCCCCTCGAGAGCTCCGAGCAGTCGGAACCTGCTGACCCTACTGCTGACTCCGCCCCCGAGCTCCCACCCACAGCCAGGTCTAAAAAGCGACGTTTGGCATCTGAACATCCTACTAGCAGGACAGTAAACAGGAAGAACAGCACGTGCCCTGCCACCAGCTCCTCCCACAAACGCAAAAAGGCAGACACCCCATTttgctcctcttcttcctcctcgttctcttcctcttcctcattttTATCCGGCTCGAGCAGCGAGCAGGCCAGCCGCTCATCCAAACCCTCCAAACTGGCGTCCAAATCGGCCGCCTCGGCCAAATCCGTGACCGACTCCGCCTCTTCTTCCTCCGCTTCATCTTCCTCtttcacttcctcttcctcctcctcttcttcggTGGTGGTTGCGGGTGCCAGCAGCTGTGCCCCGCCCTCACAGGGCGCCCGGCTCAAGCAGGGTAAAGATCAGAGCAAGTCGCGGCGCTCTCGCTCCGCCTCTTCACCTTCTCCTCGCCGCAGCAGTCGGGATAAAGAGCACAGCAAATCCAGCTCAGCTGCCTCTAAATTTGATTGGACGAGCCGCTTCAGTCCTAGAGTGAACTTACCGAAGCCCAGACTCGCCCTGCCCGGATCCTCCAAGCCCGAAACGCCATCAGGGTCCAGCAAACCCGGCCCGAGCGGACTGCAGGCCAAACTCGCCAgtctgaGAAAGTCCAGTAAGAAGCGTAGTGAGTCTCCCCCCGCAGAACTCCCCAGCTTTAGGAGGAGCACAAGACAAAAGACCACGGGCTCCTGCGCCAGCACCAGTCGGCGAGGTTCAGGTTTAGGGAAGCGTGGTGCAGCTGAAACTCGCCGACAGGACAAAATGGCCGAAAACGACAACAATCAGGACGGAGCCAATTCATCACGCACAGAGGAGACACCGCAGGGAGCttcagCTTCCAGTTCAGTAGCTGGTGCCGTCGGAATGACCACATCCGGAGAGAGTGAATCCGACGACTCGGAAATGGGCCGATTGCAAGCTCTACTGGAGGCACGTGGTCTGCCCCCTCACCTTTTCGGACCTCGTATGTCCCAACTGTTCCATCGTACCATCGGCACTGGAGCAAgttCGAAGGCTCAGCAGCTGCTGCAGGGTCTGCAGGCGACGGGGGACGAGTCTCAGCAGCTGCAGGCAGCGATAGAAATGTGCCAGCTGTTGGTGATGGGGAACGAGGAGACACTTGGAGGATTTCCTGTGAAGAGTGTCGTACCCGCTCTGATCACGCTGTTACAAATGGAGCATAACTTTGATATTATGAATCATGCATCTCGCGCTCTAACCTACATGATGGAGGCTCTGCCACGCTCTTCTGCTGTAGTTGTAGACGCCATTCCTGTCTTCCTGGAAAAGCTTCAGGTGATCCAGTTTATCGACGTGGCCGAACAGGCTCTCACCGCACTGGAGATGCTCTCACGGAGACACAGCAAGGCCATCCTACAGGCCGGCGGGTTGGCCGACTGTTTGCTGTATCTGGAGTTTTTCAGTATTAATGCTCAGAGGAATGCATTAGCCATTGCCGCTAACTGCTGCCAGAGCATCACACCTGACGAGTTTCACTTTGTAGCCGACTCGCTGCCTCTACTCACTCAGAGACTCACacaccagGATAAAAAATCAGTGGAGAGCACTTGTCTCTGTTTCGCCCGGCTGGTGGACAACTTTCAGCATGAAGAGAATTTGTTGCAGCAGGTGGCATCACGCGATCTGCTCACTAACATCCAGCAGCTTCTGGTGGTGACACCGCCGGTGTTGAGTTCAGGCATGTTTATCATGGTGGTGCGCATGTTCTCACTCATGTGCTCCAACTGCCCCAACCTCGCTGTGCAGCTGATGAAACAGAataTCGCAGAGACACTACGTTTCCTGCTTTGTGGAGCGTCTAACGGAAGCTGTCAGGAGCAAATCGACCTCGTTCCCAGAAGTCCCCAGGAACTCTACGAGCTTACTTCCCTTATCTGtgagctGATGCCGTGCCTCCCCAGAGAAGGCATTTTTGCTGTAGATGCCATGTTGAAGAAGGGTAGTGCACACACTACAGAGGCCGCAGTGTGGCAGTGGAGGGACGACCGAGGCCTGTGGCATCCATACAACCGCATAGACAGTCGGATCATTGAGacggCCCATCAGAACGGTGAGGACGAGATCAGCCTCTCAACACTTGGCCGAGTTTACACCATTGACTTCAACTCTATGCAGCAGATCAACGAGGACACGGGAACGGCACGGGGAATTCAGAGGAAACCCAACCCCCTGATCAACCCCAACACTGGTCACGTGGAGGTACGTGGTGAGGACGCGCGTGCAGAGCTGATGCGGGAGGAGGCGGAGCTAGCACGCTGCTTTATTAAGACTCTGTTCGGCGTGCTGTATGAGGTGTACAGCTCCTCAGCCGGCCCCGCCGTCAGACACAAGTGCCTCAGAGCCATCCTACGCATCATCTACTTCTCCGACTCCGAGCTGCTCAAGGATGTGCTGCGCAACCACGCCGTCTCCAGTCACATAGCCTCCATGCTGTCCAGCCAGGACTTGAAGATTGTGGTTGGCTCTCTGCAGATGGCGGAGATCCTCATGCAGAAACTACCtgatgtgttcagtgtgtacTTCAGGAGAGAAGgtgtgatGCACCAGGTTAAGAACCTGGCAGAGAGTGAGTCGTTCCTCCCCAGTCCGCCCAAGGCGTGCACGAGCGGCATCACTGCGGCAACCACCACTATCACCACGGCAACCACACCGGCCGCCTCCAGTGTCACACCAGATTTGGGCTCACCGAGTTTTCATAACAACATGGAGGACTCGCTGGACCTCAGCCCGCAGGGtcGTCTGAGTGATGTTCTGAAGAGGAAGCGCCTTCCTCGCAGAGTACCACGGCGTCCCAAATATTCTCCACCCCGAGATGATGACAAAGTGGACAATCAGGCTAAGAGTCCCACTACCACTGCGTCTCCCAAATCGTCCTTCCTGGCGAGTCTTAACCCCAAAACTTGGGGAAAACTTGGTGCTCAGAACAATAGCACTAACTCTGAGCCATCTCGCACAGCCGGGGTCAGCGGCCTCGCACGCACAACTAACAAAGACTCAGTCTCTAATAACAGGGACAAGATTAAGGCATGGATAAAGGAGCAGGCCAGTAAGTTTGTGGAGCGATACTTCAATTCAGAGAACGTGGACGGCAGCAACCCAGCACTGAACGTTCTGCAGAGACTGTGTACTGCTACAGAGCAGCTCAGCCTGcagGTGGATGGCGGTGTGGAGTGTTTAGTGGAGATCTGCAGCATTGTCTCAGAGTCGGATGTGTCCTCATTCGAGATTCAACACAGTGGCCTGGTGAAGCAGCTGCTACTCTATTTAACCTCCAACAGTGAGAGAGACGTCGTCAGCAGGGACGAGAGGATCAAAAGATTCCTGCACATTTTCTACGGCGGTCCTGTTCCAGGGCAGGAGCCACTGTTCCGGTTGGAGCCAACAGAGAACGGGCCACTGCTGGCACTTGTGCACAAAATGAACAGCTGCTTGAGTCAGATGGAGcagtttcctgttaaagtgcaCGACTTTCCCAGTGGTAATGGCAACGGCAGCAGAGGTTCTCAAGCACTGAAATTCttcaacacacaccagctgAAGTGCCAGCTCCAGAGACACCCAGACTGCACCAACGTGAAGCAGTGGAAGGGGGGACCAGTTAAAATTGACCCCCTTGCACTAGTACAGGCCATTGAGAGATACCTTGTtgtcagagGATACGGCCGAATcagagaggaggatgaagacAGCGACGATGATGGATCAGATGATGAAATTGACGAGTCACTTGCGGCTCAGTTCCTGAATTCAGGCAGTGTGCGCCACCGGCTACAGTTCTACATTGCTGATCACCTGCTGCCCTACAACATGACTGTGTACCAGGCGGTGCGTCAGTTCAGCCTGCAGCCAGAGGAGGAGCGTGAGAGCACTGACGATGAGGCCAACCCTCTCGGTCGTGCCGGCATCTGGACCAAAACACACACGATatggtataAGCCGGTcagagaggatgaggatggCTGTAAGGACTCTGTAGGAGGGAAGAGGGGTCGAGCACAAACGGCTCCCACTAAAACCTCACCACGTAACGCTAAGAAACAGGACGAGCTATGGCACGATGGTGTGTGTCCGAGTGTCAGTAACCCGTTGGAGTCGTACCTCATATCTGAACCTCCCGAGGGCATTACGTTCGACGACCCCTCGCTGGAGGTCATTCTGCTGTTGAGGGTTCTGCACTCCATCAGCAGATATTGGTTCTACCTCTACGATAATGCTGTGTGTAAGGAGATCATTCCCACTAGTGAGTTCATCAACAGTAAACTGACAGCAAAAGCAAACAGACAGCTGCAGGATCCGCTTGTGATCATGACTGGAAACATCCCACCCTGGCTCACTGAGCTGGGCAAGacctgtCCATTCTTTTTCCCGTTTGACACGAGGCAAATGTTGTTCTACGTCACTGCGTTTGATCGTGACCGCGCCATGCAGCGTCTACTTGACACCAACCCTGAAATCAACCAGTCAGATTCGCAGGACAGCCGCGTAGCACCCCGCCTCGACAGGAAGAAGCGGACGATAAACAGAGATGAGCTGTTAAAGCAAGCAGAGTCGGTGATGCAGGATCTGGGCAGTTCCAGAGCCATGCTGGAGATTCAGTATGAGAACGAGgTGGGGACTGGTCTTGGTCCAACCCTGGAGTTCTATGCTCTTGTGTCTCAGGAGCTGCAGAGAGCTGATCTGGGTTTATGGCGAGGAGAGGAGGTCACCCTTGCCAACCCTAAAGGGAGTCAGGAGGGCACCAAGTACATGTTCAGCTCCAGGGGCCTCTTTGCTGTGCCTTTTGGTCGCAGCACCAAGCCAGCTCACATCGCCAAGATCAAGATGAAATTCCGCTTTCTGGGGAAACTCATGGCTAAAGCCATCATGGACTTCAGACTGCTGGATCTGCCCCTGGGCCTGCCCTTTTACAAGTGGATGTTGAGAAATGAGTCGTCAATAAGCTCTCACGATTTGGTGAACATCGACCCCGGTGTGGCCAAATCCATCCAGCACCTGGAGGACATCATTAGGCAGAAGAAGAGACTAGAGCAAGACAAATCCTATaCAAGAGAGACACTACAGCAGGCTCTGGAGAGTTTAAATATGAATGGCTGTTCAGTGGAGGATTTAGGGCTGGACTTCACACTGCCAGGATTCCCGAACATCGAGCTGAAGAAGGGAGGCAAAGACGTCCCAGTCACCATACACAACCTGGAGGAGTACCTGAGGttgGTGGTGTACTGGACCTTAAATGAGGGTGTGTCCCGGCAGTTCGAGTCATTTAGGGAAGGGTTCGAGTCCGTTTTCCCCCTCCACCACCTACAGTACTTCTACCCAGAAGAGCTGGACCAGTTGTTGTGTGGCAGCAAATCAGAGACATGGGATGTCAAAACTCTGATGGAATGCTGCAGACCGGACCACGGTTATACACACGACAGccGGGCGGTGCGATTCCTTTTTGAGGTGTTGAGTAGTTTTGATGCAGAGCAGCAGAGACTCTTCTTGCAGTTTGTGACTGGGAGCCCGAGACTGCCAGTAGGAGGTTTCCGGAGTTTGAATCCTCCTCTGACAATTGTGCGCAAGACGTTTGAGTCAACGGAGAACCCAGACGACTTCCTGCCGTCGGTGATGACGTGTGTAAACTACCTGAAGCTTCCGGATTATTCCAGCATCGAGATCATGAGGGAAAAACTGTTAATGGCGGCACGGGAGGGCCAGCAGTCTTTTCACCTGTCCTGA

Function

GO:

id name namespace
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121110 lncRNA upstream 97161 20475804 ~ 20476171 (+) True G102327
TU121108 lncRNA upstream 99595 20473342 ~ 20473737 (+) True G102325
TU121068 lncRNA upstream 108700 20463045 ~ 20464632 (+) False G102286
TU121064 lncRNA upstream 112317 20460261 ~ 20461015 (+) False G102286
TU121067 lncRNA upstream 143044 20422021 ~ 20430288 (+) True G102286
TU121172 lncRNA downstream 9435 20638760 ~ 20686188 (+) False pid1
TU121171 lncRNA downstream 37819 20667144 ~ 20686188 (+) False pid1
TU121203 lncRNA downstream 218449 20847774 ~ 20849338 (+) False irf2bp1
TU121205 lncRNA downstream 218449 20847774 ~ 20849338 (+) False irf2bp1
TU121238 lncRNA downstream 300862 20930187 ~ 20934094 (+) True G102415
XM_026914235.2 mRNA upstream 213137 20358213 ~ 20360195 (+) True ttc36
XM_026914098.2 mRNA upstream 457915 20097695 ~ 20115417 (+) True treh
XM_026914100.2 mRNA upstream 457915 20097695 ~ 20115417 (+) False treh
XM_026914147.2 mRNA upstream 480400 20076965 ~ 20092932 (+) True ddx6
XM_034305142.1 mRNA upstream 520190 20035968 ~ 20053142 (+) False bcl9l
XM_034305532.1 mRNA downstream 5703 20635028 ~ 20657916 (+) True dner
XM_026914123.2 mRNA downstream 34313 20663638 ~ 20686186 (+) True pid1
XM_026913988.2 mRNA downstream 144279 20773604 ~ 20819328 (+) True sphkap
XM_026914092.2 mRNA downstream 215349 20844674 ~ 20848380 (+) True irf2bp1
XM_026913314.2 mRNA downstream 231457 20860782 ~ 20864194 (+) True foxa3
TU120293 other upstream 1449455 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 1452206 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 1779059 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 1833334 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 1973957 18598714 ~ 18599375 (+) True G101419
XR_003402807.2 other downstream 396702 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 1157791 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 2323352 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 2533782 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 2642733 23272058 ~ 23272208 (+) True LOC113527010

Expression Profile