RNA id: XM_026914166.2


Basic Information

Item Value
RNA id XM_026914166.2
length 10045
RNA type mRNA
GC content 0.48
exon number 37
gene id LOC113526807
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21026027 ~ 21102216 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCGCCGGCACAGCGCGGTAGGGAGGCGGGCTTGTGAAGCGGGGAGTCGGTATAGCTACTATTCGATACAACACTACAGTGCGGGATAAGTGGATATCCGACTACACCGGCTGCTATCCGACTGTGCAGTTtgaccgcacacacacacacgcacacgcatacacacaagcgcgcgcgcacacacacatactcatacacGTTTTCTGTTACCTCTTCACCCTGCTCTCCTCGCGCACGGTCACTGCATCCTCCTCTTGCCGGTGggctttttttccttcttgcaCTGCAACGATGCAGAGCGCAGCGGCTCCTTCCCAGCATCACTGACCGCATCAGGTTTTCTAAAAGCGCAAGACAGGCATCCTCAGGGCTGGGGCTGCAGGGTTTTTTTGGGAAACAGGCACAATGGCCAATGCCGCGACGGATCTGGACAATGCTGAAGCCCAGAGacaattaaacaacaacaaccggCCCAGCAGCACAGGATTCTGGGAAAGCGAAAGCACTAGTGCTAAACTGTTCGAATGCTCACGCATTAAAGCACTAGCAGATGAAAGGGATGCGGTGCAGAAGAAAACCTTCACTAAGTGGGTGAACTCTCACCTGGCTCGCGTCTCCTGCCGCATCTCTGACCTGTATAATGATCTGAGAGATGGTTACATGCTCACCAGGCTACTGGAAGTGCTTTCAGGAGAACTACTGCCCCGACCTACGAGAGGCAGAATGCGAATACACTGTCTGGAGAATGTGGACAAAGCCTTGCAGTTCCTTAAAGAGCAGCGAGTTCATCTGGAGAACGTTGGATCTCACGATATTGTTGATGGCAACCATCGTCTTACGCTCGGCCTCATCTGGACCATTATCCTTCGCTTCCAGATCCAAGTGATTAAAATTGAGACAGAGGACAACAGGGAGACACGCTCGGCTAAAGATGCGCTGTTACTGTGGTGCCAGATGAAAACAGCAGGGTATCCTGAAGTGAACATTCACAATTTCACCACATGCTGGAGAGATGGATTGGCTTTCAATGCCCTTATACATCGACACAGGCCTGATTTGATTGAATTTCACAAGCTGACCAGATCGAATGCCACATACAATCTGCAGCAAGCCTTCAATATCGCTGAGCAGAGTCTCGGACTCACTAAACTTCTTGATCCAGAGGATGTGAACACTGAGAATCCAGATGAGAAGTCTATTATAACATACGTTGTGTCCTACTACCACTACTTCTCCAAAATGAAAGCTCTTATAGTAGAGGGCAAAAGAATCGGAAAGGTTTTGGATAACGCCATAGAAGCTGAGAAGATTATTCAGCGTTATGAAGCTCTGGCCTCAGATCTGCTGGAGTGGATTGAAAAAACCATTAGCATCATTAGCAACCAGAAGTTTGCTAACTCTCTAACAGGAGTACAACAACAGCTGCAGGCCTTCACAACCTACTGCACTATTGAGAAGCCTATAAAgTTCCAGGAGAAAGGGAATCTTGAGGTGCTGCTCTTTACCATCCAAAGCAAACTCAGAGCCAACAACCAGAAGCCATATGTGCCTCATGATGGAAAGCTCATTTCTGACATCAACAAGGCATGGGAAAGGCTAGAGAAGGCAGAGCATGAAAGGGGTGTGGCTTTAAGGAAAGAGCTGATTCGTCAGGAGAAACTGGAGCTACTTGCTCAGCGGTTTGATCACAAAACCACCATGAGGCAGGCTTGGCTTAATGAGAACCAGCGGCTTGTTTCTCAGgATAATTTTGGCTATGATCTACCAGCAGTGGAGGCGGCAATGAAGAAGCACGAGGCTATTGAAGCTGACATCTCATCATATGAGGAGCGCATGGGTGCGGTGGTGGAGCTGGCCATGGAGATGGAGAGTGAAGGATATTACGATATCAGACGCATTATGGCTAGGAAAGACAACATACTAAAACAATGGGATCTGCTGAAAGAGCTCGTGACGGCTCGAAAAACACGGCTAGAGAAAAACCTAGCACTGCAAAAAACCTTCCAGGACATGGTCTACATGATTGACTGGATGGAGGAAATGCAGATGAAACTGCTTTCTAAAGACTTTGGGAAACACCTGCTGGAGGTGGAGGACCTGCTGCAGAAACACACTCTACAGGAGGCGGACATCACTGTACAGGCAGATCGTGTGCAAACACTCAACGCTGCTGCGCTTAAATTTACCACCATTGACGGATACCAGCCATGCGACCCTCAGGTGATCTGTAATCGTGTAAATCATGTAAGCACTTGTCTGGAGGAACTGAAACAGCTAGCAGCTAAACGTCGCTCTGAGCTAGAGGATTCTCGTGAGCTCTGGGTTTTCTTCCAGGAAGTAGAAGAGTGTGAGTGCTGGATGCGTGAAAAGATCTCAATCCTGAATACACAGAGCTGCGGGAAAGATCTGAGTAGTGTCCTGAAGCTCCTGCAGAAGCACAAGAGTCTAGCTGGTGAGCTGTTAGCTCGACGTGCGCTTCTCCAGCAGACTatgaaaaaaggaaagcaaATTCTCACGCAAAAACGGTTGCACTCAGCTGGGATAAATGACAAGTTGATGGAGGTGAAGGAAGATTGGAAAAGACTGGAGGATCAAGCCGCAATGAGACTTGGCCACCTGCAGGAGGCTCTGGATTTCTTTCAGTTTAGTGCTGAAATGGATGATCAGCTAGCATGGCTTCAAGATGCCTACAGACTTGTTTCCAGTGACGATTTTGGTCATGATGAGTTTTCTACGCAGTCGCTGCTCAAGAAGCATATCCGTGTTCGCGAGGAGGTGGACAAGCACCGGCAGAATGTTGTAGCACTTCGCAAACATGCGGTAGTGCTGCCGCTTCATTATGGAGAGCTAGAGGAAGTAAAGGAGCGGATACAGGAAGTGGAGCGTGTGTATAGTGAGGTGGCAGAGGTTGCGGTGATGCGGCAGCAGTGGCTGAATGATGCTCTTGCTGTCTACCGCATGTTCAGTGAAGTGAATGCATGTGAGCTTTGGATTGACGAAAAGGAAAAATGGCTGAACAAAATGGAGGTTCCTGAGAGACTTGAGGATGTTGAGGTGGTCGCTCACAGGTTTGAGAGCCTGGACCAGGAGATGAACAGCTTGATGGGAAGGATCCTGGATGTGAATCTTATTGTTCAGCAACTCTTGGACAGTGACCATCCCAGTTCCACTGAGGTCAGAGGGTGTCAGGATCACTTGAAcagcagGTGGAACCATATGGTAGAGCTGGTTGAGCAGAAGAAAGATCATTTGGACTCAATCCTTCGCATCCAGAATTATTTACTTGAGTGCAGTGAGATTAAATCACAAATTCAGGAAAAACGCAAAGCCATTGATGCTACACAATATTCGGGCAGTGACCTGGGCAGCGTCTTAGCGCTGCAGCGACGTTTGTCTACCATGGAGGGAGCTCTCGCTGTTCTAGAGCCCAAACTCATCCATTTGCAGCAGGAAGCAGAAGACCTTGCAACCTCTCAGCCACACAAAGCAGAGGAGATCCTTATTCCCTTTGAGGCTGTGAGTGTGGAGTGGGACGAATTGAAACGTACTCTTCAGGGTTGTGAGGATTCGCTGACTGTAGCTGGCCGGCTGCAGCAGTTCATTCAGGATCTGGATTCCTTCTTGACATGGATGGTGCAGAAGCAGACAGAGGCAGCATCTAATGAGCTGCCTGAGTCTTTGGACGAAGCTGAGAGGCTCATCAACCTCCACGCAGCTCTTAATGAAGAAATTCGCAGCTATGAGGAGGATTTCGAGCGACTGCAGGCTGTGAGGGAGCTGTTGGACTCAGAGGACACTCTACTAGCGAATGCTGCACTACACCAGTGGCTCCAAAAACTTAGTGCAGGCTGGAACAAACTGCTACAGATGTGGGAGAGCAGGAGGGATGAGCTAGTGCAGGCACACATCTACCATCTTTTCATGAAAGACGTCAAGCAGGCTGAGGCCTTCCTCAACAACCAGGAGTCCTCATTGGCCCATGTGGAGCTCCCTACCACGGTGGAGACGGTGGAAGCAGCCATTAAGAAACACAAAGAGTTCAGCATGGCGATGGAGCTCAATCTGCATCGGATCAAAGCTGTGATTGAGGCAGGAGAGAGTCTCATCAGCCAGAACAACATCTACTCTGAGCGCATCCGAGATCGGGTGGATTTACTCATTACCAGggggaATCAGAACCGTGAAGTGGCACAGCAATGGCTCAGAAAACTCACCGATCAGTGGGAGCTGCAGAGATTCATGCAGGACTGCCATgagCTGGGTGACTGGGTGATGGAGAAGATGCTAATGGCACGTGACTCAACCTGTGATGACACTCAGCAACTCCATAAGAAATGGCTGAAGCACCAAACGTTCATGGCTGAACTCACACAGAACAAAGAGTGGCTCGACAAAATTCAGAAGgaAGGTGAGCGGCTGATGGCGGAGAAACCAGAGCTGAGTTCCATGATTCAGCAGAAGCTCGGTGAGATTCGTGAGTGTTGGCTGGAGCTGGAAAACCTGACGCAGGTCAAAGCGCTGCAGCTGTTTGAGAACGACCGTGCACAGCAGATCGCTCAAAACTACTCTCGACTGAATGAGCGTGTGCAGCAGCTGGAGATGCAGCTAAGCCACTGCGACCACGGCCACGACCTCACCTCCGTCAACAAGCAGCTCAAAAAGCTCCAGatgATGGAGCGACAAATGGAGGAGTGGTGTAATGAAGTGTGTGATCTGCAAATGCAGTCCTCCTCTCTCCCCGAGGAGTATGTGATGACAGACGCAGTGACCGAGCGTCAGGCTGAAGTGGAGGCGAGGATCGTACGTCTCATCGAGCCTCTGAAGGAGAGACGAAGAATCCTGCTTGCCTCCAAAGAGGTGCACCAAGTGCGCCGTGACCTGCAGGACGAAATTCTGTGGGTGCAAGAGCGCCTTCCGCTAGCTACCTTACAGGAAACTGGGAGTAGTTTACAGGCCGTGCAGCAGCTCATGAAGAAAAATCAGAGCCTGCAAAGGGAGCTGGAGAGCCACCGGGGGCATGTGGAAGAGGTGATGGAGCGAGCGAGTATGTTCTCATCGGTGCGCACGACTGAGGCGGAGTGTGTGAGCGCATTAATGGAGGATCTACACAGCCTATGGGGGACACTGTGGGCTGAGACAGAGCATAAACAACTGCACTTAGACTCCATGTATCATGCTCAACAGTACTACAGCGACATTACAGAGGTGGAGGCGTGGCTCAGCGAACAGGAGCTGCATATGATGAATGAGGAGAAAGGAAAGGATGAATCAAGTACTCTGCAGCTGCTGAAAAAACAGTTAGCTTTGGAGCAGACGATTGAGGATTACGCTGAAACCATCGGGCTTTTATCACAACAGTGCAGACAACTACTGGAGCTCGGCCATcctgacagTGAACAGATCAGTAAACGCCAATCTCAAATCGACCGGCTCTATGTGTCTTTGAAGGACTTGGTGGAAGAGCGGAAGTGCCGGTTGGAACAGCAGTACTGGCTCTTTCAACTCCACAGAGAGGTGGAAGAACTGGAACAGTGGATTGCTGAGCGAGAGATCTCAGCCAGCTCCACCGAACTCGGGCAGGACTATGAACATGTCACGATCCTGCAGGAAAAGTTCACTGAGTTTGCCTCGGAGACAGGAAGTGTGGGTCAGGAGCGAGTGATAGCTATTAATCAGATGGTGGATGAGTTGATTGATTATGGCCATGCGGACGCTGCCATCATTGCTGAGTGGAAGGACGGAGTGAATGAATCATGGGCTGAACTGATGGAGTTGATGGAAACCAGAGCACAAATGCTTGCTGCGTCACACCAGCTTCACAAATTCTTTTCCGACTGCAGAGAGGTGATAACACAGATAGCTGATAAACACCGGAGATTACCGGAAGTGCGTGAGCACCAGGATGGCACAGCAAACACTAGCACACTTCAGAGACTCATGAACACATTTGAACAGGACATCCAGCTATTGGTTGGGCAGGTGAgacagttacaggaaaatgccGCTCAGCTCCGTACTGTTTACGCAGGGGAGAAGGCAGAGGCCATCGCCATGCAGGAATATGAAGTGATGCAAGCATGGAAGATGCTGATCATGTCCTGTGAGGACTGCCGTGTACAGATTACCACAGCATCAGATAAACTGCGATTTTTCAGTGTAGTGCGTGATCAGTTGATGTGGATGGACAGCATCATCTGTCAGATAGGAACGGGAGAGAAACCCAGGGATGTCTCCTCTGTCGAGGTGCTCATGAACTACCATCAGAGCCTGAAGAGTGAAGTGGAAGCACGAAATAAGAGCATGGTGCAGTGTATCGAGATGGGAAAGACACTGCTGGCTGCCAGAAACCCAGCAGCAGAGGAGattaaagaaaaactgGAGAAAGTTCTGGCCAAACAGAGAGAGCTGACAGAGAAATGGGATAAACACTGGGAGGAACTACAGCACATGTTGGAGGTTCATCAGTTTGCTCAGGAGGCGATGGTCGCTGAGTCCTGGCTCTCATCTCAGGAGGCATTCCTGGTCAGTCAGGAACTTGGTGGCAGTGTAGATGAAGTAGAGCAGCTCATTCGCCGACATGAGGCCTTCAGGAAAGCAGCGGCATCCTGGGAAGAGAGATTCAGCTCATTACGCCGCCTCACTACGGTGGAGAAGGTGAAGGCAGAGCAAAGTAAGCTGCCTCCAACCCCTTTGCTGGGTCGTAAGGTTTTTCTGGACCCTCAGGATTCATCTCCAGCACGTAGCAGCCCTTCATCACTTCACAAACAGACCATTTACGAACAGGGGGACTATTGGGGTGAGCGAAACATGGCTCAGCCATCTACACCATCTGGATCTCGGAGACTTGGCTCCACAGTCTCAAACTACACGCCAATTGTGAGTGGATCAGCCATGTCCCGAATCCAGGAGGCAAGAAACACCGGTGTCCTGGGGGTTGCTGCAGGTCTTGGAATGCCCACAGAACATAAAAGCACTCAGATCAAACCAATGCGCGACACAGTGCGCCCTCAAATAGATGTGAATGTAATGGCAGAGGTAGTGCTTCAGGAGCCAGGATGCAGTGGAGGCAGTCGCTCTGAATTGCAGGTGGAGCAGCATCGTCCTCATGTGAAGGAATTGCGTATAGAACGTCAGCTTTCTAACGAGCAGCTGATTCAGGCGAGGAGAGATGAGCTTCCACAGGAAGTATGGAGGGaaagggcagagagagagaggaggctaGAGAGACAGACGTCCAGCGAACAGGAAGTATACGAAACTCGGAGAAGAGACCGACATCGGCTTGAGAGACAAGAAAGCAGCGAACATGAGACGGGCAAAGAACCATCAGATAGACGATCAGGAGGAGGAGAGAAACGGTCTACCTTAGCTGACATTGTGGAAcagcttcaagagagagaagctgcACAGGCTCGAGGAGAAATTCCTCGCCTTCCAAACGGATTTCCAGAGAAGTCGTCACGGCCGGACCGACCCCGAGCTCGAGACCGACCAAAACCACGGAGACGGCCGCGGCCCAAAGATGGGGCACAGGGCGAAACGCGACGCTCACGATCTGCTCCTGCCCAGAGCAGCTCGTCTGTCCCCCAGCCACCTTCCCATCATGCTCAGCGTGAGGGCTTCCTCTTCCGCAAATTAGACATAGAGAGCCAGAAGAAAAGCTCCAACAGCAGATCTTGGGTGAATCTGTACTGCGTACTGAGTAAAGGTGAACTGGGTTTCTTCAAGGACTCAAAGAACACAGCGTCTACATACAATAATGAGCCACGTCTCAATCTGAGCAGCTGCTCCTGCGACATCAACCTTGGctacaagaagaagaaaaacgtCTTCACGCTTAAAACTAAAGATGGGAGCGAGTTCCTATTCCATGCAAAAGATGAGGATGATCTGAATGGCTGGATCTCGAGTATCACCACTAGTATTAGCGAACATGAGGAAATCGCTAAATGGGGGCAGTCTCATCCAACTACCTCATCTACAGACGAAGGCACACGGAGGGAAGGCAGCAGAGCTGAGAAATCAGACAGGGCAGATCGGGGCTCTGAACGCTCGGACAAGGgtgagaaaatggagaaaaagagcggaaaaaagaaatgaagaggcGACTTTCTGCCAGTTTGCATTGCGTTCCACTGGGAGTCTGATGTGACACTAAAattgaagagaaagagagaaaatgctgcactctttctctttctctccgtccTGACTTCTGCCATCCGAGTGGATTTACCCTGAAGGTTTGAAGCATCTCCTGGTGGCCGTTGGAGATTTTCAGTACCGATGCCTGAAGAGCGGTTCTTTGAGAGGCCAATCAAAGATTAATCCAAGAGATGTTACCCTGAGCTCATTATAGTTATTTCTAATTTATACATCTGTTTATGAATGTTTTCAGTTCTCCAGGTCCATTCTGAAATGTCTAGTAGTGGTCAGTAAAAGCACCTGGACATGTGTTATAATCTTATAATCACTCTGACATACTACTgctagacatttttaaatatgttcaaATGAGTCCTATCAGTGTCTATTCACATCTAACATACTGATGAGAATGGAAATATGCCAAAAGTTAATTTGttcttttatataaataatttatttaatgttttttttaaacttctggaCACTTTGTACACCATAACAGCACTGATTGTGTGATTATCAAAGCATGAATTATATATCGGCTTAAATTTACAGACTGAGAAAATAAAGGTATGTATGAAATAAAGTAAAGACAATAACCATGCAGGGGACTGTAAAGCCTGAAATCTGCCTTCCAATACTGCTTTTAACGCCCTCGTAAACATCACCTAATGAGTGTGCATTTGCACTGTGGGGGTGGCGGAAGTGTGTAGGTCACGTTTTTCCCTCTGCAGTGAGAACAATGAAGCTGAAGTGATTTTCTTGGAGATTTACACACAGAGTGTTACACTCTACGCCGAGTCATAACggcattattgcattattaatgTCATTAGTGTGCTAATGAGAtatggtaaaaataaaaacaatagggtGGTTTTCTTGGAAAtttacacactctgtctctgtcacatTTTGTGTAGAGTTTTATTGGCTAGCTAACTACCCAATAAGGCTAGCGTGCTAACTAGCTGGTTTGCTAaacagttactatagaaatatttttattgaaatcattttattgccggtttttatttctatttatttcctttGGTCTACAACATACTAAGTTATAAAGGTTTGGTAACTGGTTATTAACTAACCAGCTACCATGCTAACAGCTACTTGGCTAGTAGAGTAAAGTAGCACTATTCCTTTAGCTGTCATGTACAGATGGAGGAATTGGAGGGATAAAAATCAATCTAAACACAGACAATCAAATGTTAGAGTTTACAGTTTTTATAGTTTACACTTACCAACAGTTCATCcaccattttgaaaaaaataaaataaaattaaaaaaaaaaaaaaacaaatgaaagtgCGTCAAAGAGTGCAGTAATGCCCTCTGGGTAAACTGTGGCCCTGAAGTCTCCAATGTTTTCGATTCAATCCCTCATTTAAAGGTCATCTAAGCAACATCACTCAGCAGCCAGGGAAGGGAAAGATGTTATGGGCGCATTAAAAACAGGATTGGAACAGAGGTTTGTATTTTTGCCTCCTTATTTTTGAGAATAAGCCACAGCATTAATAAAATGCCCTTTTCCTGTTTCAGTGGAATAAGGAAGTGACTGAATTCCTTCCAAAGgtcattacttcctgtttcagtgtTTGCAGGGACAAAAATGTCATGTCTGTGTCTCCCTAAAGTCCACCGTAATGTATGTTCAGACTGGAACAAtaagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttacatcATCCAGGTAATGAGAACTCAGGCATTTGATTTTAAACCCCGTAGTCTTCCTTGTGTCACgcccacgtgtgtgtgttttttttttgtgttaaatgtgcACATCAGTATTTTTCTTAAACTGTTGCAGTATTCAGGCACTGCATGAGAATAAATTGTTTCTTAGTA

Function

GO: NA

KEGG:

id description
K06115 SPTB; spectrin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121459 lncRNA upstream 21307 21004336 ~ 21004721 (+) True G102585
TU121214 lncRNA upstream 75037 20939413 ~ 20950991 (+) False prx
TU121238 lncRNA upstream 91934 20930187 ~ 20934094 (+) True G102415
TU121203 lncRNA upstream 176690 20847774 ~ 20849338 (+) False irf2bp1
TU121205 lncRNA upstream 176690 20847774 ~ 20849338 (+) False irf2bp1
TU121596 lncRNA downstream 46868 21149084 ~ 21194404 (+) True G102703
TU121821 lncRNA downstream 402528 21504744 ~ 21505622 (+) True G102903
TU122075 lncRNA downstream 946958 22049174 ~ 22049382 (+) True G103130
TU122086 lncRNA downstream 1026153 22128369 ~ 22170834 (+) True G103140
TU122206 lncRNA downstream 1424159 22526375 ~ 22526736 (+) True G103246
XM_026914458.2 mRNA upstream 22284 20990984 ~ 21003744 (+) True kcnk6
XM_026913403.2 mRNA upstream 40932 20971589 ~ 20985096 (+) True si:ch211-14c7.2
XM_034304979.1 mRNA upstream 58757 20939416 ~ 20967271 (+) True prx
XM_026914467.2 mRNA upstream 101739 20906063 ~ 20924289 (+) True pld3
XM_026913314.2 mRNA upstream 161834 20860782 ~ 20864194 (+) True foxa3
XM_026914174.2 mRNA downstream 6697 21108913 ~ 21124986 (+) True shkbp1
XM_034305203.1 mRNA downstream 152848 21255064 ~ 21311506 (+) True LOC113526806
XM_026914163.2 mRNA downstream 152848 21255064 ~ 21311506 (+) False LOC113526806
XM_034305204.1 mRNA downstream 152848 21255064 ~ 21311506 (+) False LOC113526806
XM_026914164.2 mRNA downstream 152848 21255064 ~ 21311506 (+) False LOC113526806
TU120293 other upstream 1902151 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 1904902 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 2231755 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 2286030 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 2426653 18598714 ~ 18599375 (+) True G101419
TU122021 other downstream 684900 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 1850461 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 2060891 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 2169842 23272058 ~ 23272208 (+) True LOC113527010
XR_003402831.1 other downstream 2171092 23273308 ~ 23273458 (+) True LOC113527009