RNA id: XM_026914174.2


Basic Information

Item Value
RNA id XM_026914174.2
length 3726
RNA type mRNA
GC content 0.46
exon number 18
gene id shkbp1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21108913 ~ 21124986 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GgaagtgtaaaataaaaccGGAAGTTTTTTCACTGAAGCGTTTGAGGCATGGTTGGGTGTATTATTTAGGTTGTTAATCTTTTTGTATTTGATTGGAAGCTATGGAGAAGCGTTAATCTGTAAGACATTGGGTTAAATATGTGTTTCCTCTGAACTGGACGCTGTCATGGCTCGAGTGGCTGGagatattattcatttaaacgTCGGAGGAAAGAGgTTCAGTACCTCCAGGCAGACTTTGACATGGGTACCTGACTCCTTTTTCTCAAGCCTCTTGAGTGGCCGGATATCCACCTTAAAAGATGAAACAGGAGCGATTTTCATCGATCGTGATCCTTCACTTTTTGCTCCTATTCTGAATTTCCTGCGCACTAAAGAACTGCATCCCAGGTCTACAGATGTGAATTTACTGATGCATGAAGCTGAGTTCTATGGAATCACACCATTAGtgCGTAAACTGCAGCTGTGTGATGAACTAGATCGCTCATCATGTGGCACAGTGCTGTTTAACGGCTATCTGCCTCCTCCAGtgtatccTGTGAAGCGCAGGAACAGACACAGCGTTGCCGGCTCTCAGTTCGTGGCTGGCCGAGCTGTCCCTCTGGAGAGAGCCATGGTCCGACGCAGCAACACAATGCCACCCAACCtgggcaactcaggcatactggCAAAAACTACTGCTACAGAAGAGAAAATGTCAGGTCAGGGCTCAGATCCAGGAATGGTACGGATCATATGTGGCCACCACAACTGGATTGCGGTGGCTTACGCACAGTTCGTGGTGTGTTACAGggtTAAGGAGTCGACAGGGTGGCAGCAAGTGTTTTCGAGCCCCAGACTGGACTGGATCATCGATCGAGTCGCACTCAATGCTAAAGTCATGGGCGGGTCACTAGGAGACAACGACAAGATGGTTGCGGTGGCGTCTGGGACAGAGATCATATTATGGGCAGTCTGTCctgatggaaatggaaatgagaTTGgtGTCTTTAGCTTAAGTGTGCCGGTGGAGGCTCTGTTCTTTGTGGGGAATCAGCTCATCGCAACGAGCCACACAGGGAAAGTGGGTGTGTGGAATGCTGTAACCAAACACTGGCAGAATCAGGATGTGGTTCCCATAAACAGTTATGACACAGCAGGGTCCTTCCTTATCCTTGGCTGTAATAACGGATCCATTTACTACATTGACGTACAGAAGTTTCCATTAAGGATGAAGGATAATGATTTACTGGTGACAGAGTTGTACAGAGATCCCAGCGAAGACGCCATCACAGCACTTAGCGTCTATCTTACACCCAAAacgaGTGACAGTGGGAACTGGATCGAGATTGCGTACGGCACCAGCTCAGGAGCGGTGCGTGTGATTGTTCAGCATCCCGAGACAGTGGGCTCGGGGCCACAACTCTTCCAGACGTTCAGTGTTCATCGGAGTCCTGTTACCAAAATAATGCTGTCGGAGAAACACCTCATCTCAGTGTGTGCAGATAATAACCACGTGCGTACCTGGACTGTAACACGGTTCAGAGGAATGATCTCCACTCAGCCAGGCTCCACCCCCCTCAGCTCATTTAAAATCCTCTCACTGGATGATATTGATGGACATGCAGGCTGCAGTGCTGGCACCGAGATTGGTccatatggagagagagatgagcagCAGGTGTTTATTCAGCGCGTCGTTCCTGACACTGATAAACTCTATGTACGACTGTCGTCTAATGGCAAAAGGGTGTGCGAGGTGCGCTCTGTGGATGGGACCTCCATCACAGCTTTCGTGGTTCATGAGTGTGAGGGGTCAAGCCGCATCGGGTCACGGCCACGCCGCTTCCTGTTCAGTGGCCATGGCAACGGCAGCATTCAGATGTGGGACCTCACAACGGCCATGGAGATCGCCGCCAAGGTGGACATAAAAGctctGGGAGGCCCTACTGAGGAGGAGCTGTTGGAGTTGTTGGATCAGTGTGACTTGGCACTAACTAGAACACCAGACATGAGTCCTGCTGCATcgctcacacactcttctcGTAACTCTACCtgcagTCTGCAGTCCCAGTTGAGTGAGAGTGCTCGTGTTGGTGTGTCCGGCGTTCGTGGCGTCACTCTTCCACGACCTCAGCAAGCGTTTATAAGAGCACGTGATATTCCTCCTCATCTCGGCCTCAGCATGAGCTCTCTGAGCAGCAGCACGAGTGAACGAGAGAGGGAGCGACAtctggacagagagagagacagagatggccTCTTTGCCCCTCGGAGAGGCAGTTTTGTAGAACGATGTCAGGAACGAGCCAAAATCTCAGACATTGCAGGAACAGAAGCTCGTCTCGGCCTCAGACCACATTTATCATCTTCGGCATCCAGGCGACCTGCCCCCTCTGTCCCAAGCTACGCCTCCTCATCAAGTTTGAGCCCGATCAGATCACAAACACCCACATCTCCACGACGAGGACCCGCGTTGCCCGTAGGTGAAGCCACACCCCCTGACGCAGGGCCTAAACCAGAAAGCCCCTCTTCCCCACCACCCACCAGTCCTAAACCACATATGAATGAGACCAGCTTCTAACTGGCTGACTTAAAATACTGCTTAATTAATGTGCAAGTGGACACACCCACTCAACCATGCACCTGCTGTTCAGGTGAATTAGTGTGAATGAAGAGGTGTATCATTAAGTTTGTATtgctttctcattttctttctctttctcagctttggtctgtttttctttctttttcttattgtttttcgtccttatttcatttctttctttatcatttatttatttcttctttaagATTGTCTtccagggctgtgtgtgtgagagagaatggagCGAGAGAATGGAGCGAGAGAATGGAGCGAGAGAATGGAGCGAGAGAATGGAGCGAGAGAatggagcgagagagagatatcaCTTGGTTTTGATCAATCTACTTTACCCAGTATTTGAAACCTACACAAGAGCTCTGTGCTCCTGATGCATACATTTTCAGGAAATTACtgttttgtaaatgtataataGTATAATGTTACAAAATAAGGAATGATATTATGTTAACTGATGCGTGTTAACCTTCAGTCAGATTTTTCGAGACTTGAACTGATCGCCTGCTGATATTAAATGTTCATATCCTAATAATTGCCTAACATTTTTATCATGGTTTGTGATCTCACTATATGGTGtttaaaaagtgtgaaatgGGTAACTAAGGTCCTAGGACCAGCTTGGTCCTAAATAAGGGCTCCTCCAGGTAGCCAAAAAAATGCTGCCTACCTAGCAGCCTCCTGGCACACACGTTATGAATACTTTTCCTAATATGTATACATGATTTCTTTTTCAGTCACAGGTGTAGGCTTGTGGTGTTCTTATAGATATTTCATCACTGCCATGAATATTGAAAGTTTTGTCCTTTTTGTAGTCTTTTTTTCACTGGATCATGTTGAATAGTGTGTAACCCCTTAAATTCCTGGCTTATTATTCTGTAATTCATCTTAGAGTACATTATACAGCAACTGCTATCAATTATTTAGTAATTCCCGCAAAACTAAGAGGAGAGTTATGTAGTTACGATAGTGAACATTGTAAGTTTGTCTGGCATGTCCTGGGAATTTAAGGGGTTAATATGTATTTAAGTATTCCATATATGTATAAGTATCCATACAATGTATAACTATTTATACGATACAATTCAAGTCAcaacaaattcaaataaatattgtataccAAA

Function

GO: NA

KEGG:

id description
K21953 SHKBP1; SH3KBP1-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121459 lncRNA upstream 104192 21004336 ~ 21004721 (+) True G102585
TU121214 lncRNA upstream 157922 20939413 ~ 20950991 (+) False prx
TU121238 lncRNA upstream 174819 20930187 ~ 20934094 (+) True G102415
TU121203 lncRNA upstream 259575 20847774 ~ 20849338 (+) False irf2bp1
TU121596 lncRNA downstream 24098 21149084 ~ 21194404 (+) True G102703
TU121821 lncRNA downstream 379758 21504744 ~ 21505622 (+) True G102903
TU122075 lncRNA downstream 924188 22049174 ~ 22049382 (+) True G103130
TU122086 lncRNA downstream 1003383 22128369 ~ 22170834 (+) True G103140
TU122206 lncRNA downstream 1401389 22526375 ~ 22526736 (+) True G103246
XM_026914166.2 mRNA upstream 6697 21026028 ~ 21102216 (+) True LOC113526807
XM_026914167.2 mRNA upstream 6697 21026028 ~ 21102216 (+) False LOC113526807
XM_034305209.1 mRNA upstream 6697 21043516 ~ 21102216 (+) False LOC113526807
XM_026914169.2 mRNA upstream 6697 21072332 ~ 21102216 (+) False LOC113526807
XM_026914170.2 mRNA upstream 6697 21072332 ~ 21102216 (+) False LOC113526807
XM_034305203.1 mRNA downstream 130078 21255064 ~ 21311506 (+) True LOC113526806
XM_026914163.2 mRNA downstream 130078 21255064 ~ 21311506 (+) False LOC113526806
XM_034305204.1 mRNA downstream 130078 21255064 ~ 21311506 (+) False LOC113526806
XM_026914164.2 mRNA downstream 130078 21255064 ~ 21311506 (+) False LOC113526806
XM_034305205.1 mRNA downstream 130078 21255064 ~ 21311506 (+) False LOC113526806
XR_003402807.2 other upstream 11072 21026027 ~ 21097841 (+) False LOC113526807
TU120293 other upstream 1985036 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 1987787 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 2314640 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 2368915 18738343 ~ 18739998 (+) True G101434
TU122021 other downstream 662130 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 1827691 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 2038121 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 2147072 23272058 ~ 23272208 (+) True LOC113527010
XR_003402831.1 other downstream 2148322 23273308 ~ 23273458 (+) True LOC113527009

Expression Profile