RNA id: XM_026914232.2


Basic Information

Item Value
RNA id XM_026914232.2
length 2106
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC113526836
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27105466 ~ 27107571 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCCAGTCGCATTTATGTACCAGTGCTGCTCCTCTCTGCATCTTTGAAAGGGACTGGAGTGCTGACTTTGTCACTTGAAAAACCTTAAGATAATGCGGTGCATGTCCCAACCAAGCCTGAACCTGCCAGCAGACTAAGGAAGAAAGCGATCTTTCAATCTGAGATGCTGCTTCATGGTTTTTAGACAAGGAGAAAAGAAGACAAGAGAGCAAGGAAGAGGAGCAGAGGGCACTACAAAATAGTAAAGTTACATCTTGACCAAAATTTTACTGAAGATTAAATGAGAGTTATTTGCCTAAATGATGGCTAATATCCTGTAATCAGCCTTCAGTTTTGAAGAAAGAAGAACCACACAAGAGGAGTGGTTCTAAAGTTCATCAGAAGATCACATCatgaaatttgtttttgttagcaAATCTTCGGGACTCTAAAGAAGAGGTAATATCTTTCAGTTTGCAGATGGAGGACATTTGCAGCACTGCGTTAAGATCTTGCAAATCAATTCTGCCTGAAATTGCTGTTTGATTTGTCCTTGTTTGTTAGAATTCTTTGACAAGCAGTTTTGGGTGGTCTTATTAGCACCTAACTGATTGGGTGATGTTTACAGCCATTAATGTTTTTCAGTGTAATCACTACTGCTCATGATAAACTAAGTAAAACTTGATTGTTCTTCTTTggagagagaatttttttttacaaatagaGAAATCAATGAGCTAGTTGGAATCTGAAATGCAGGAATGATTGCAGCATGCACATGCTCCAGGCGTTTATGGCTGGAATCGTTGCAGAGACTCATCTTGACTGGTTAAAGCTCCTGAGGATACAGAAGAAGTGTGCTTATGGATCTGAGCACCGCGCATGATGAGCATCTATCCTTCCCGGGTGAGACAACTACTGCTCACCACACCTCTGCACCTCCTGCCCTGCCCTCCCACAGCCCAGTCCTGAAGCAGGGTCTTGCGGCTGGCTTTAAGAGAGTGTGTCGGACAGAGGAGGATAGCCCGTGCCCGTTTCCAGGGCTGCTCCCAGGCGTGTTGGAGATGCGAGTGAAAGAAGGAAGCAAGATCCGCAACCTGATGGGCTTCGCAATGGCACGGATGCAGTGCGAAGAAGGAAACAGCAAACAGGTCGGCCTGAGGCAGGTGGTGTTCACCGGTTCGGGCCGAGCAGTCACCAAAACCATCACCTGTGTCGAGATAATGAAGAGGAAAGTGGGTGGACTCCACCAGCTGACTAAACTGCGCTATAAAGGTGTTCGGGAGGTGTGGGAGAGTCAGGAAGGAGGCAGTGCCAAAATGACCGTCCACAGGACTGTGCCATCTATCAGTATCCTTCTCTCCAAGGACCCTTTGAACCCCCTTGAGCCAGGATATCAGCCCCCTGAGATGCAGAGCACTCTCTGGGAAGAAAGACAAGAtagtgatgcagtgtgtagtgatGCAGGAAAAAGGCAATTTGACTACACTGTCATACCGAGTGAAACACAGTCAAAAAGATTCTGTCCTCAAGGTGGAATCTCTATAAATTAAGCATTCGGGCTAATGGGGAGATCAGAACCACTTGCTGAAACTGCAAAGCTGTTGCAAAGAAAATCTGAAGGTAGTTTGTTTGCACATGTTATTGTAATATCATATATTGTGCTTTTACCTGATCGAAATGGTATCTGTCGAGCCTTGAGATGGACTGGATGAGTTCATCTGATCACTTCTGTTACAGTGTATGTCCGCTTGCAAATCATCATATAGTGCCACCACTTCTTTCTGCTCACTGCGAGTGGGCATTTCCTTCATGTTTCTGTGGATTTGATTAATGTTAAAAGTCGTCTCTTTTATAATCAACTTCTGAATACCCTTATTTAATTGGCACAAACTGTTTTGCATTGAGTGCACTGTTGAACTCGTCACCACACCATGAGTGGATTtcacaaggaaaaaaataaaaaataataataataaagataaataaatgagtagaCTTATAGGTGAGCTGTCACTATTATAACACTGTAAATGCACCAACATAACGACAGACAGAAAATGAATACtatgttaaatgaataaatgaataatttgttGTTTCCATGAAGACAATAAATTATGAAG

Function

GO: NA

KEGG:

id description
K14525 RPP25; ribonucleases P/MRP protein subunit RPP25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124999 lncRNA upstream 39443 27064691 ~ 27066023 (+) True G105732
TU125000 lncRNA upstream 41604 27063355 ~ 27063862 (+) True G105733
TU124808 lncRNA upstream 407288 26697978 ~ 26698178 (+) True G105548
TU124739 lncRNA upstream 413789 26691434 ~ 26691677 (+) True G105490
TU124727 lncRNA upstream 494206 26610941 ~ 26611260 (+) True G105479
TU125117 lncRNA downstream 21777 27129348 ~ 27129629 (+) True G105841
TU125136 lncRNA downstream 34274 27141845 ~ 27145031 (+) True G105855
TU125251 lncRNA downstream 122213 27229784 ~ 27234224 (+) True G105904
TU125340 lncRNA downstream 390860 27498431 ~ 27498630 (+) True G105981
TU125360 lncRNA downstream 435488 27543059 ~ 27545517 (+) False ddx11
XM_034304945.1 mRNA upstream 42405 26913328 ~ 27063061 (+) True si:dkey-205h23.2
XM_034304949.1 mRNA upstream 42405 26913328 ~ 27063061 (+) False si:dkey-205h23.2
XM_034304947.1 mRNA upstream 42405 26913328 ~ 27063061 (+) False si:dkey-205h23.2
XM_034304951.1 mRNA upstream 42405 26913328 ~ 27063061 (+) False si:dkey-205h23.2
XM_034304952.1 mRNA upstream 42405 26913328 ~ 27063061 (+) False si:dkey-205h23.2
XM_026913265.2 mRNA downstream 12614 27120185 ~ 27128413 (+) True LOC113526324
XM_026914193.2 mRNA downstream 418552 27526123 ~ 27545526 (+) True ddx11
XM_026914194.2 mRNA downstream 418552 27526123 ~ 27545526 (+) False ddx11
XM_034304962.1 mRNA downstream 450869 27558440 ~ 27600569 (+) False iqsec3b
XM_026913411.2 mRNA downstream 454896 27562467 ~ 27600569 (+) True iqsec3b
TU124829 other upstream 272039 26830978 ~ 26833427 (+) True G105569
TU123982 other upstream 1790253 25294899 ~ 25315213 (+) False G104781
TU123976 other upstream 1798655 25294899 ~ 25306811 (+) True G104781
TU122935 other upstream 3363151 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 3475743 23615103 ~ 23629723 (+) True G103830
TU125244 other downstream 103818 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 451265 27558836 ~ 27558946 (+) True trnal-caa_8
trnal-caa_9 other downstream 452816 27560387 ~ 27560497 (+) True trnal-caa_9
XR_003402810.2 other downstream 837219 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other downstream 851954 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile