RNA id: XM_026914241.2


Basic Information

Item Value
RNA id XM_026914241.2
length 1710
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC113526844
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28133842 ~ 28141732 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGGTCCGCGCTGTCCGAGTTTTCCGCCGGCAACTTGCAGGAGACagagaacagcacacacacatttgcacacacacatacccacacacacacacaccctgaggaTGAGAGAGATTGTCCACATTCAAGCCGGTCAGTGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGTTATCAGTGATGAACATGGCATCGACCCCACTGGAAACTACGTGGGTGACTCAGACCTCCAGCTGGAGAGGATCAGCGTTTACTACAATGAAGCTTCCTCCTCCAAATATGTTCCCAGAGCCATcctggtggatctggagccaggCACCATGGACAGTGTACGATCTGGAGCCTTTGGCCATCTCTTCAGACCTGATAACTTCATTTTTgGTCAGAGCGGAGCAGGGAACAACTGGGCTAAAGGCCACTACACAGAAGGAGCAGAGCTAGTGGACTCTGTCCTGGACGTGGTACGGAAGGAATGCGAGAACTGCGACTGCCTCCAGGGTTTCCAGCTCACCCACTCACTCGGAGGAGGCACAGGCTCTGGCATGGGCACACTGCTGATCAGCAAAGTGAGAGAAGAATATCCCGACCGCATCATGAACACCTTCAGTGTGGTCCCTTCCCCCAAAGTGTCCGACACAGTGGTGGAGCCCTACAACGCCACGCTGTCCATCCACCAGCTGGTTGAGAACACAGATGAGACATACTGCATTGATAACGAAGCCCTATACGACATCTGCTTCCGCACACTCAAGCTGGCCACACCCACTTACGGTGACCTCAACCACCTGGTCTCGGCTACCATGAGCGGAGTCACGACCTCTCTGCGCTTTCCAGGCCAGCTGAACGCTGACCTGCGCAAGCTGGCTGTCAACATGGTACTTCCCCGCCTGCACTTCTTCATGCCTGGATTCGCTCCTTTGACAGCACGTGGCAGCCAACAGTACCGTGCTCTTACTGTCCCTGAGCTCACACAGCAGATGTTTGACGCCAAAAACATGATGGCCGCTTGCGATCCACGTCACGGCCGCTACCTCACTGTGGCCACCGTCTTCCGAGGCCGCATGTCCATGAAGGAAGTGGATGAGCAGATGCTGGCCATCCAGAGCAAGAACAGCAGCTATTTTGTCGAATGGATCCCCAACAATGTGAAGGTTGCTGTGTGCGACATTCCACCCAGGGGGCTCAAGATGTCCTCCACCTTCATTGGCAACAGCACGGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACGGCCATGTTCAGGCGTAAGGCTTTCTTGCACTGGTACACTGGTGAAGGCATGGATGAGATGGAGTTCACAGAGGCTGAAAGCAACATGAACGACCTGGTGTCTGAGTACCAGCAGTACCAGGATGCCACGGCTGAGGAAGAAGGAGAGATgtatgaggatgatgaggaggagtcAGAGGCCCAGGTTCAAAAGTAAACACTCACGAAGTAGCCATTATAGTATACAACAACCCTTCTCTAAAACCGACCTCTTATCACGCAGCCGGCAAAAATATCTTAATCTTTCACTTCTCTTACAGGTAGATTAAACTTCATGTTAACCATTTGTGCCAGTTACAGCTGACATTCTGTACTTTACTGTGCCATAACAGCTTCTTGATGGTACTGTATTTGTTGTATAGTGTTGTTCACTGACCAATCCTAAATAAACCAGTGTTCCAAATGGACCTCA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125760 lncRNA upstream 35841 28097729 ~ 28098001 (+) True G106343
TU125500 lncRNA upstream 404681 27726402 ~ 27729161 (+) True G106118
TU125432 lncRNA upstream 531108 27602158 ~ 27602734 (+) True G106064
TU125360 lncRNA upstream 588325 27543059 ~ 27545517 (+) False ddx11
TU125340 lncRNA upstream 635212 27498431 ~ 27498630 (+) True G105981
XR_004578326.1 lncRNA downstream 92075 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA downstream 92075 28233807 ~ 28244868 (+) False LOC117597547
TU125917 lncRNA downstream 248466 28390198 ~ 28450197 (+) True G106477
XR_003402825.2 lncRNA downstream 288271 28430003 ~ 28448635 (+) True LOC113526961
TU125977 lncRNA downstream 427738 28569470 ~ 28571760 (+) True G106531
XM_026914242.2 mRNA upstream 9922 28119024 ~ 28123920 (+) True mc1r
XM_034305483.1 mRNA upstream 9922 28119024 ~ 28123920 (+) False mc1r
XM_026914374.2 mRNA upstream 18881 28098396 ~ 28114961 (+) True tcf25
XM_026914364.2 mRNA upstream 38016 28089378 ~ 28095826 (+) True LOC113526918
XM_026914143.2 mRNA upstream 45417 28080997 ~ 28088425 (+) True mvda
XM_034305485.1 mRNA downstream 4531 28146263 ~ 28161869 (+) True def8
XM_026914253.2 mRNA downstream 7530 28149262 ~ 28161869 (+) False def8
XM_026914254.2 mRNA downstream 9149 28150881 ~ 28161869 (+) False def8
XM_026913727.2 mRNA downstream 21953 28163685 ~ 28181203 (+) True LOC113526563
XM_026914070.2 mRNA downstream 65021 28206753 ~ 28215082 (+) True gas8
TU125683 other upstream 63157 28066912 ~ 28070685 (+) True uraha
XR_003402810.2 other upstream 167534 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other upstream 172071 27959525 ~ 27961771 (+) False LOC113526832
trnal-caa_9 other upstream 573345 27560387 ~ 27560497 (+) True trnal-caa_9
trnal-caa_8 other upstream 574896 27558836 ~ 27558946 (+) True trnal-caa_8
XR_004578358.1 other downstream 4531 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other downstream 4531 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other downstream 4531 28146263 ~ 28161869 (+) False def8

Expression Profile