RNA id: XM_026914242.2


Basic Information

Item Value
RNA id XM_026914242.2
length 1976
RNA type mRNA
GC content 0.42
exon number 3
gene id mc1r
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28119024 ~ 28123920 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGCTTAGTTTCCCTGttctttgtttacatttatacttCTGTGTTAAGGTTCATGCCTGTGTTACCTTTTCTGAGTATGGATATGCTCATGATTACCCTGTCTGGCTGTACCTTGACCCCTGAAGGTTTTCACGATTACGATTCCCggatttcacaaaaaaaatgaagaacacCTCGATTTTACACCGTTGCATCCTGCCTTCTCTAACtgcatgttaaatatttaaaaaaagttatttgtcCAACAGCGCGCGACCCGTCTGCTTGTGGATTTAACCTCAGTATAAAGtttaaagAGACAAACCACTGCTTCACCATGAACACCATGGAGCCCAGCCTGAGTATCGACTACATGGACAATGTTACCCTCAATGTGACATCCAGTGACATGAACATGACAGGCATCGCCCAGATCATGATCCCTCAGGAACTGTTCCTGATGCTGGGCTTGATAAGCCTGGTGGAGAACATTTTGGTTGTTGTCGCCATCATCAAGAACAGAAACCTGCATTCTCCAATGTACTATTTCATCTGCTGCCTCGCAGTGTCTGACATGCTGGTCAGCGTGAGCAACGTGGTGGAGACGATGTTCATGTTGCTCACGGACCACGGCCTTCTGAGTGTGACAGCGAGGATGCTGCGCCACCTGGACAACGTCATTGACATCATGATCTGCAGCTCTGTGGTGTCCTCGTTGTCCTTCCTGTGCACCATTGCAGCTGATCGCTACATCACCATCTTCTATGCCCTGCGCTACCACAGCATAATGACCACACAGCGTGCCGTCACCATCATCGTGATCGTTTGGCTAACCAGCATCACCTCCAGCTCGCTGTTTATCATCTACCACACTGACAACGCAGTCATCGCCTGCCTCGTGACCTTCTTCGGTGTCACGCTGGTTTTCACAGCAGTGCTCTATCTGCACATGTTCATCCTGGCGCACGTGCACTCCAAGCGCATCATGGCGCTCGATAAAAACCGGCGCCAGGCCACCAGCATGAAAGGTGCAATCACTCTAACCATCCTGTTGGGGGTTTTCATCATTTGCTGGGGTCCATTCTTTCTGCACCTGATCCTAATCCTGACGTGTCCAACAAACCCTTATTGCAAGTGTTACTTCAGCCATTTCAACCTCTTCTTAATCCTCATTATATGCAACTCTCTCATAGACCCTTTGATTTACGCATATCGGAGTCAAGAACTGCGAAAGACACTTAAGGAAATTGTTTTGTGCTCTTGGTGCTTTGTTATGTAAGATTCATTAAGAGAAAATAGCAGACATAGTGTACAGTTTACGCCTGTAAAGGCCGTTTGACTGACAGACATTCGACTTCTAAATTTAATTACAGCCTTCATTACTTATCTATTTCAAGGACTAAAAtaaggcacatatgcaaactgaacTGAAGTAAAAGGTCCATTTGTCTGTTACAGAAAGCAGTGTCCCAGTGATTATGGCATAAAAATACTGAATGCTGTCTCACAATTCAACGTCGGCtctaattaaatgtaatgattCAGGTTGATTTTTAATCCAGTTAATCTGCAGGGACTTTTGATGATGTCCATCTATCACAATtcattaagataaaaaaattattatccTCATCAATGTCATCATCCTGACACTCCAGCTGGGAGATTTTTTTGgagatgtatttatttattcttgcaTAGAAATTCTGAATTTTATGTTGCGAAAATCATTCTTAGGATAACCTATTAAACCCTAACAGTAGTCTCTTCACTTCAGTAACTACTGTATTTGGCTCTTATTCAATGTAAAACTTTGTTAAGCTGATGCCTGTCATGTTACTGGTGAttttatgaacaaaaatattatcATGTGATTTTGTACGAGGGAAGAATATTTTATGAAGTAACTGAATTTTAAGGCACGTAGCTCATGATCAAGTTGTGAAAggacattttcataaataagcAGTTACGTTATGTCTGAAAGTCGTGAGTC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004980 melanocyte-stimulating hormone receptor activity molecular_function

KEGG:

id description
K04199 MC1R; melanocortin 1 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125760 lncRNA upstream 21023 28097729 ~ 28098001 (+) True G106343
TU125500 lncRNA upstream 389863 27726402 ~ 27729161 (+) True G106118
TU125432 lncRNA upstream 516290 27602158 ~ 27602734 (+) True G106064
TU125360 lncRNA upstream 573507 27543059 ~ 27545517 (+) False ddx11
TU125340 lncRNA upstream 620394 27498431 ~ 27498630 (+) True G105981
XR_004578326.1 lncRNA downstream 109887 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA downstream 109887 28233807 ~ 28244868 (+) False LOC117597547
TU125917 lncRNA downstream 266278 28390198 ~ 28450197 (+) True G106477
XR_003402825.2 lncRNA downstream 306083 28430003 ~ 28448635 (+) True LOC113526961
TU125977 lncRNA downstream 445550 28569470 ~ 28571760 (+) True G106531
XM_026914374.2 mRNA upstream 4063 28098396 ~ 28114961 (+) True tcf25
XM_026914364.2 mRNA upstream 23198 28089378 ~ 28095826 (+) True LOC113526918
XM_026914143.2 mRNA upstream 30599 28080997 ~ 28088425 (+) True mvda
XM_026913309.2 mRNA upstream 40137 28071684 ~ 28078887 (+) True pdcd5
XM_026913310.2 mRNA upstream 40137 28071715 ~ 28078887 (+) False pdcd5
XM_026914241.2 mRNA downstream 9922 28133842 ~ 28141732 (+) True LOC113526844
XM_034305485.1 mRNA downstream 22343 28146263 ~ 28161869 (+) True def8
XM_026914253.2 mRNA downstream 25342 28149262 ~ 28161869 (+) False def8
XM_026914254.2 mRNA downstream 26961 28150881 ~ 28161869 (+) False def8
XM_026913727.2 mRNA downstream 39765 28163685 ~ 28181203 (+) True LOC113526563
TU125683 other upstream 48339 28066912 ~ 28070685 (+) True uraha
XR_003402810.2 other upstream 152716 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other upstream 157253 27959525 ~ 27961771 (+) False LOC113526832
trnal-caa_9 other upstream 558527 27560387 ~ 27560497 (+) True trnal-caa_9
trnal-caa_8 other upstream 560078 27558836 ~ 27558946 (+) True trnal-caa_8
XR_004578358.1 other downstream 22343 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other downstream 22343 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other downstream 22343 28146263 ~ 28161869 (+) False def8

Expression Profile