RNA id: XR_004578357.1


Basic Information

Item Value
RNA id XR_004578357.1
length 2966
RNA type misc_RNA
GC content 0.44
exon number 13
gene id def8
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28146263 ~ 28161869 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgactcAGCTAGGATTGACAGGGATGATGTTTTTGTGGTCGGTGGACGCAGAAACTGTCACCTCTGTGCAAAGATGGAAGTCGAACACTAATTCATTTTGCTAACTATTTCCAGGATGAATGAAATCTTTGAATAATATGCTGGTGTTAAATCAATATGAGATGTAACCAGCGATATGGAATACGATGAGAGACTTGCACGCTTTCGCCAGGGTCACGTCAACCCGTTTGACAGGAGTGAAAGTGATGGCACCCCAGACAGGCAGGATCCTCCGAAACAGGAGGTGAGACCGGAGCTCTTCTCTGCGGAGACGAAAAGCCAAAACTCCGACCGAACCATGGACCTAGGGCTGGCTGAGGACCATTTCTCACGACCTGtgGGTTCTTTCGTGGCATCAGACATCGAGCAGCTGAAGCAGGCTATAGAGGAGTGTAAGAAGCTGATCTTAGAGCTGCCGGAACattcagagagacagaaggacacTGTGGCCAAACTCATCCACCTGCGCCTTAAACTCCAGGAACTGAAGGACCCGGAAGAGGACGAGCCCAACCTGCGGATCCTGCTGGAGCACCGCTTCTCTAAGGAGAAGAGCAAGAGCGTCAAACAGACGTGTGACAAGTGCAGCACCATCATCTGGGGTCTTATTCAGACCTGGTACACGTGCACAGGTTGTTACTACCGTTGCCATAGTAAGTGCATGAATCTCATCACAAAGCCATGCGTGAGGTCTAAAGTGAGCCACCAGTCGGAGTACGAACTAAACATCTGCCCAGAGATCGGCCTGGACAAACAGGATTACAGATGTGCCGAGTGCCGAGCCCAGATCTCTCTCAGAGGCGTCCCGAGCGAGGCGAGGCAGTGTGACTACACGGGACAGTATTACTGCAGCAGCTGCCACTGGAACGACACCGCCATCATCCCTGCACGTGTCATTCACAACTGGGAATTTGAGCCCAAAAAGGTATGTCGCTCATCCATGCGTTATCTGGCTCTTATGATCTCCCGACCTGTGCTGAAGCTGAAGGAGATAAACCCACTACTCTTTAACTTTGTAGAGGAACTGGTAGAAATCAGGAAGCTGCGTCAGGATATATTATTGATGAAGCCCTACTTCATCACCTGTAAAGAGGCCATGGAAGCCAGACTGCTGCTACAGCTTCAAGATCGGCAGCACTTTGTTGAGAACGATGACATGTACAGTCTACAGGACCTGATCGACATCTCCAGCGGTCGACTCAGCTGCTCGCTCACTGAGATTCACACCACCTTTGCCAAGCACATTAAACTCGACTGTGAGCGATGCCAAGCCAAAGGTTTCGTGTGTGAGCTGTGTAAGGAGGGGGATATTCTCTTCCCGTTCGACAGCCACACCTCTGTATGCCACGACTGCTCTGCTGTTTTCCACAGGGACTGTTATTATGACAACTCTACAACGTGTCCGCGATGTGCCCGGATGACCGAGCGGAAGCAGGAGGAGCTGGCGGAGCTTTAGAGACGCAGGACGTTGGCGGGTGCTACCAGACTTTCACTGTGACAGCACTACAATCAGTGCTAAAACTGGCATTCATCTGTCAAGGCAGGAGAGACACTGATTGAGATGTATGGCAGGGGTTAAGTTGTACCATCGGCAGTACAGCATTCGCAATGAGCTCTATGAACAGGCAGGACTGAAAATGGAACACTACGAGTGTTGCGAGGATTTTAACAGGTTTAACACTGGTTTCCTATAAAACTGTCTCCCATAACCTAGCCGTATTAATGAGATTGTTTTAAGgtgctttcacttttttttttttgttcaaaggTTGGTGTAACTCTGGCGAAGAGGAggttatttgtatttttggagACTTCTGGAGAATTTAAGCTGACTTTTTCCAacttcacagttaaagtcaTGTGCTGGTGAACATCCTGAAAAATAGACACCCtcttatttttagttacattgcaACATTGGAATAttggcaatgaaatattttcatgtcaGCAGGCCAATCTCTCAATCTCTGTAAATCACTTTCCCCTCAACTTGCAGTCTGATTAATCATCTGATTAAAAAATCTCTTACCAGTGTCACTTTGCTTTTCTGAAATTTTGTATGTTCTGCCTTCCTTggcatgatttattatttttttttttttttagttacagtGCAACTTTGGACTATTGctgatgaaatattttcataaagcTCCATATATTCGCTCACTAACAAGACTAATTGTTGAGCGAATATGTTCTCCCATgttagtttttctttcttgcccCACAACttgcaacctgattggtcaggaggtaacGAAGCCCTTCACGTTACTCTACACTTTTCCAAAAAGCTGCATAGTGACATCAGAGCTTTTTAAAAGTGATCacgctccctctctctttgtgtTCACTTCCCTGAAATATGTAAAACgtgtgagttaaaaaaaaaagtgtgaaagcactCTTATATTTAAAGGCTGTTTATTATActacagtataatatatttctgtatttatctcTGCATTGTAGTTACAGGGACCTggcagtgtgtgatgtgcagGATCAACAGATTTCTCTTTGCCAAACATTTATCAAAATCAGTGTCAAAAATATTGACATATCCAAGCACCCCATTTTAAGATTAAATTGATTATTAGTATGCCAATTAACCTGAATGACGAGTGAAAAAGAAGTAAGGCTCTGTACACAACGTCGTGTACGTCTCTGTGGATCTTAATCAGTATGTTCTCATTTTGAGGCAGGCAATACCTCAGAATGTAATGGTTTATGCACTCTTTATTATTTGTTCTAAAATAATATGGAATATGCTGTGTTACCTTTCAGCATGCCACTTGTTTTTTTTGCGCTGTGATATAACAGATGTTGTGATGTCAAGTATTGTGAAGTTATTCTCATCTGTGCAATGTAACGTGATGCTTATGAAGAACACGagtaaaattaattacaaatgta

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125760 lncRNA upstream 48262 28097729 ~ 28098001 (+) True G106343
TU125500 lncRNA upstream 417102 27726402 ~ 27729161 (+) True G106118
TU125432 lncRNA upstream 543529 27602158 ~ 27602734 (+) True G106064
TU125360 lncRNA upstream 600746 27543059 ~ 27545517 (+) False ddx11
TU125340 lncRNA upstream 647633 27498431 ~ 27498630 (+) True G105981
XR_004578326.1 lncRNA downstream 71938 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA downstream 71938 28233807 ~ 28244868 (+) False LOC117597547
TU125917 lncRNA downstream 228329 28390198 ~ 28450197 (+) True G106477
XR_003402825.2 lncRNA downstream 268134 28430003 ~ 28448635 (+) True LOC113526961
TU125977 lncRNA downstream 407601 28569470 ~ 28571760 (+) True G106531
XM_026914241.2 mRNA upstream 4531 28133842 ~ 28141732 (+) True LOC113526844
XM_026914242.2 mRNA upstream 22343 28119024 ~ 28123920 (+) True mc1r
XM_034305483.1 mRNA upstream 22343 28119024 ~ 28123920 (+) False mc1r
XM_026914374.2 mRNA upstream 31302 28098396 ~ 28114961 (+) True tcf25
XM_026914364.2 mRNA upstream 50437 28089378 ~ 28095826 (+) True LOC113526918
XM_026913727.2 mRNA downstream 1816 28163685 ~ 28181203 (+) True LOC113526563
XM_026914070.2 mRNA downstream 44884 28206753 ~ 28215082 (+) True gas8
XM_026913720.2 mRNA downstream 53918 28215787 ~ 28223504 (+) True mthfsd
XM_026913719.2 mRNA downstream 53920 28215789 ~ 28223504 (+) False mthfsd
XM_026913332.2 mRNA downstream 291191 28453060 ~ 28460177 (+) True emc8
TU125683 other upstream 75578 28066912 ~ 28070685 (+) True uraha
XR_003402810.2 other upstream 179955 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other upstream 184492 27959525 ~ 27961771 (+) False LOC113526832
trnal-caa_9 other upstream 585766 27560387 ~ 27560497 (+) True trnal-caa_9
trnal-caa_8 other upstream 587317 27558836 ~ 27558946 (+) True trnal-caa_8

Expression Profile