RNA id: XM_026914289.2


Basic Information

Item Value
RNA id XM_026914289.2
length 1500
RNA type mRNA
GC content 0.52
exon number 1
gene id LOC113526868
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27889761 ~ 27891260 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGCGCGTCCACGTGAGCTTCTAGCGGTATTTAATGGGCAGCGGCTCTGAAGTGAACATctttctgctgaaaaaaaaaaaacactaaataaccCAGAACACTAAGGagaaaagacaataaataaGCATTTGAACGATTTTCGGACCCAAGAGTAAGCGCAAGGGCGGTTTATTGCGCATACGCGGATGGTCTCCTGTAGATTTTTGTCCATCAGAAGGATTTTATTAGCATGTAAGATGTTTTTGTGAGCAGATGAGGACACGTTGcgtgttttttttaaggattatGAGCCAGGGATTGTGTAGGATATATTCATGACGGTGAAAAACATTGAACTTTGTCGTGTTGGGCATTAAGGTGTAACGCGTAAACGCCGCGGCGCAccgtagtgtagtgtagtgtgtagtgtagtgtgtagtgtagtgtgtagtttagtgtgtagtgtagtagtttagtgtgtagtgtagtgtaggcCACTGACGCCGACTTTAATCTCCGAGGGCAAAAGTAAAGCTGTTTGCAGATCCGGTTACTGCTAAGCCTGTGCGCTGTCTCGTCGGGAGCATGCGGGGAAACATGGCTGGAGAGGAGCTGAGCGAGACCAGAGCGCTGAGTGGATCTGCGTGGCTGTGGCGCTGCCGTGGAAACTGAGGACGAGCGAGGCGCAGGTTTCCACCCGACACATCCCTCCAGGAgaacttttcatccatttttctCCACAAATATGGGCAAAGACGAGTGCAAAACCATGCTGGACGCTTTAAACAAGGTGACCGCCTGCTACAGGCACCTGGTGTCCGCTTTAGGGAGCACGTCGGACTCGCAGAACCTGCGGGAAGAGCTGAAGAAGACGCGGCGGAAAGCGCAGGAGCTGGCGGCGGCCAACCGGACCAGACTGACCGCGCTGCTCAAAGACAAGAGCATCAGCAACGACGACCGCGCCGAGTACGAGCGCCTGTGGGTGCTCTTCACCAGCAGCATGGAGATCCTGGAGGTGGACATGAGGAGGTCGCTGGAGATCGGGCAGGATTTCCCGCTCAAGGTGCCCACGCGCCACTTCATCCAGACCGGCATGACCGGGAGCACGAGCACGGTGGCGGCTCGGGCCATGAGCATGCAGAACATGAAATACGAATCGGACGCGGGCATCGACACGGCCGATCTGAAAGACCTGGAGGCCGAGATCGCTCAGCTCGACCAGAtgatggaggagatggagatgaAGGTGCAGGTGGCGCCGTGGGCGGTGGAGGCCAAGCAGGAAGCGGGAGCTGAACTCAAATCCACAGTCAGCGTGGGAAACTCATCCGTCGGTGTCATCTCCATCTGCGAAGAGGAACCCAAAGATGGGGGCGAAGGTGAAGCTGGTGTCATGAGGATCTTCGCGGGCATCATTTTCACTGTGGTTTTACTCATTGCAGGAATTCTGGGATATCTGGTCGTCAATCTTTGAAGTAGGATCTTATTAGAGTTGTGtgcacactaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125500 lncRNA upstream 160600 27726402 ~ 27729161 (+) True G106118
TU125432 lncRNA upstream 287027 27602158 ~ 27602734 (+) True G106064
TU125360 lncRNA upstream 344244 27543059 ~ 27545517 (+) False ddx11
TU125340 lncRNA upstream 391131 27498431 ~ 27498630 (+) True G105981
TU125251 lncRNA upstream 655537 27229784 ~ 27234224 (+) True G105904
TU125760 lncRNA downstream 206469 28097729 ~ 28098001 (+) True G106343
XR_004578326.1 lncRNA downstream 342547 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA downstream 342547 28233807 ~ 28244868 (+) False LOC117597547
TU125917 lncRNA downstream 498938 28390198 ~ 28450197 (+) True G106477
XR_003402825.2 lncRNA downstream 538743 28430003 ~ 28448635 (+) True LOC113526961
XM_026913763.2 mRNA upstream 26343 27860028 ~ 27863418 (+) True nip7
XM_026914112.2 mRNA upstream 34996 27846818 ~ 27854765 (+) True nob1
XM_026914063.2 mRNA upstream 176191 27710176 ~ 27713570 (+) True gcsha
XM_034304962.1 mRNA upstream 289192 27558440 ~ 27600569 (+) False iqsec3b
XM_026914104.2 mRNA downstream 11511 27902771 ~ 27915940 (+) False pdpr
XM_026914105.2 mRNA downstream 11511 27902771 ~ 27915940 (+) False pdpr
XM_026914106.2 mRNA downstream 13171 27904431 ~ 27918148 (+) True pdpr
XM_026914227.2 mRNA downstream 53530 27944790 ~ 27966308 (+) False LOC113526832
XM_026913512.2 mRNA downstream 99304 27990564 ~ 28063149 (+) True LOC113526465
trnal-caa_9 other upstream 329264 27560387 ~ 27560497 (+) True trnal-caa_9
trnal-caa_8 other upstream 330815 27558836 ~ 27558946 (+) True trnal-caa_8
TU125244 other upstream 675191 27211389 ~ 27214570 (+) True G105898
TU124829 other upstream 1056334 26830978 ~ 26833427 (+) True G105569
TU123982 other upstream 2574548 25294899 ~ 25315213 (+) False G104781
XR_003402810.2 other downstream 53530 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other downstream 68265 27959525 ~ 27961771 (+) False LOC113526832
TU125683 other downstream 175652 28066912 ~ 28070685 (+) True uraha
XR_004578358.1 other downstream 255003 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other downstream 255003 28146263 ~ 28161869 (+) False def8

Expression Profile