RNA id: XM_026914329.2


Basic Information

Item Value
RNA id XM_026914329.2
length 1987
RNA type mRNA
GC content 0.44
exon number 11
gene id pex16
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24323720 ~ 24335065 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGTTGCCGGAAGCGCATTGCTTTGCGGAAGTATCATTCACATTCTGTTGCGTGGTCTAATTAATGGGTTTTCCTGTGATGTTGCGCTAATTAGGCTGCACAGATGTCTGGAGTGTATTTAGAGAAGATTGCACGTGTGTATGAGCGCTACCGGGATTATGTGACCCGGAACCCGGGCGTTACGGCGCAGCTGGAGAGCGCAGTGCGGACTCTGTCTTATCTCATAGCAGGCCGCTTTTCAGACTCTCATGAACTTTCCGAGTTGGtgtatTCAGCATCAAACCTGCTGGTGTTGCTGAATGATGACATTCTAAGGAAGGCTCTCTCCAAGACTCTGCCTGTGTCTCTCTCCCAGCAGAGGCTGCTAACTTGGCTTTCAGTCCTGGAGTATGTGGAGGTCTTCACTGAGATGGCAGCCGCTAAGCTGTGGAAAGAACCCGGGCGCTGGCTGGTCGTCGTCCTCATTCAGATTGCAAAAGCCATCCTGCGCATCCTGCTGCTCTTCTGGTACAAATCAGGCATCCAGACATCACCTCCCATAATCCCTTTGGATAgagacacacagctgtacaaCAGAGATCAGAGCAGCGTGGAGGAAGATGTCACATTCGTTGGACAGCGCTCAGGGAGAGTGGTGAGACCTTTGAGAAGTGTGTCTTCACTGCAGAGTCGACTGTGGGGAGATCCTCACAGAGAGAGGAAGCGGAGGGAGCAGGAGGAGGACCTACAGGCAAGCCCCACCCCTCTGGGCCTGCAGGAGACTATTGCAGAATCACTGTACATCGCTCGACCCTTAGTGCACTTGACCGCTCTAGGACTCTGTGGCAGACGCTCCTGGAAGCCATGGCTCATCTCTGGCATCTTGGAGATAACAAGTTTCAGTTTGTTGTCTGACACAATGAAGACACTGAACCGCAGAGAGAGGGCCGAGATGAGGAGAAGAGCTTTCCTCCTGCTCTACTACCTACTCCGCTCACCTTTCTATGACAGATACTCTGAAGCAAAGATCCTCTTCCTTCTCCGGTTCTTGGCCGATTACATTCCTGGAGTAGGCTTAGTTGCACGCCCACTGATGGAATACTTACCCATTTGGCAGAAGATCTACTTTTATAACTGGGGCTGAGGCTGAACAGGCGGAAAAGGTCATACAAACCTGTATATATAAAGGACTCAGAAAGTGCTTACGTCTGCTGCAAAACCACATGGGGACAGACggacgcacgcacacgcacaagcacacacacacacgaacatcCTGTGACAATCTGAGTTGAAGATGAGTTGTACAACACattatttcagtttgtttagCTAGCATGATTGAGTTTCATAAAATGGACAGTTTAATCCAGTTCAGAAAATCATTGTTGTCTTTATCttgtttctttttgctttcagttttcatgattttttttttttgttattattttgtataatataATTCATCAAATCTCTCAGTGCCACATTTTACACCATTCTTTGTTCATGTAATGTTTTCTTATGAGAACACAAATCTATTCTGttcagttagatttttttttttttttttaaagagataatGGTTTCACGCAACAGGACAGTGATTCAACCTGACTTGCTGAGCTTGAGTCATTATTGCTGTTGAGATATTTTTTTCAACTGAGGTATTACATTGAGTTGagtagaaatgataaaaagcTATAAGGCCTTTTCAGAGGACATCCTGTCTTTCTGGACCCCCTTTACTTCAAACCAGCATTATAAGCAGTAAACTGATGAATGTCCTCTGTTTTTCACTGTGAACTAACTAAAAGCTCATTTTGGTAATTGAGTAAACCTGACTTTTGTGCAATGGCTGGAAATGCTCtatgtgattataaatattcatgattttattaaaggcatctgaaaaaaaaagaagactagAAATCCAATGTGAGAAATGGATGATGGATTTTGTACACacctttatgcatttaataaatCAGCCAGTGATGGGAAAAGCAA

Function

GO:

id name namespace
GO:0007031 peroxisome organization biological_process
GO:0005778 peroxisomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13335 PEX16; peroxin-16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122944 lncRNA upstream 569460 23749063 ~ 23754260 (+) True G103896
TU122937 lncRNA upstream 581405 23739688 ~ 23742315 (+) False cstf3
TU122936 lncRNA upstream 581460 23739651 ~ 23742260 (+) False cstf3
TU122932 lncRNA upstream 584967 23729878 ~ 23738753 (+) False G103889
TU123375 lncRNA downstream 145300 24480365 ~ 24484022 (+) False G104257
TU123377 lncRNA downstream 145300 24480365 ~ 24484096 (+) True G104257
TU123404 lncRNA downstream 229567 24564632 ~ 24571887 (+) True G104284
TU123458 lncRNA downstream 240427 24575492 ~ 24634405 (+) True G104325
TU123569 lncRNA downstream 427577 24762642 ~ 24764112 (+) True G104429
XM_026914406.2 mRNA upstream 447675 23856438 ~ 23876045 (+) False wt1b
XM_026914405.2 mRNA upstream 447675 23856438 ~ 23876045 (+) False wt1b
XM_026914404.2 mRNA upstream 447675 23856440 ~ 23876045 (+) True wt1b
XM_026913970.2 mRNA upstream 560675 23739629 ~ 23763045 (+) True cstf3
XM_026913979.2 mRNA upstream 731939 23582140 ~ 23591781 (+) True pcyt1ab
XM_026914312.2 mRNA downstream 4570 24339635 ~ 24349296 (+) False si:ch211-71n6.4
XM_026914313.2 mRNA downstream 4634 24339699 ~ 24349296 (+) True si:ch211-71n6.4
XM_034305020.1 mRNA downstream 33014 24368079 ~ 24384446 (+) False cep126
XM_026913419.2 mRNA downstream 33014 24368079 ~ 24384445 (+) True cep126
XM_034305019.1 mRNA downstream 33014 24368079 ~ 24383619 (+) False cep126
TU122935 other upstream 581405 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 693997 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 1049211 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 1050262 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 1051512 23272058 ~ 23272208 (+) True LOC113527010
TU123976 other downstream 959834 25294899 ~ 25306811 (+) True G104781
TU123982 other downstream 959834 25294899 ~ 25315213 (+) False G104781
TU124829 other downstream 2495913 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 2876324 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 3223771 27558836 ~ 27558946 (+) True trnal-caa_8

Expression Profile