RNA id: XM_026914364.2


Basic Information

Item Value
RNA id XM_026914364.2
length 1972
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC113526918
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28089378 ~ 28095826 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGAGAGACTCTGATAGACAGAAATTTCTGGCTTCAGTCAAGAAACGAGGACGTGACGAAATCGCGGGGCGGGGCTTGCGTACTCTGACCACGCCCAcctttgttctttttaataacAGTATAGGTGCGTGTTTAATCTGCTAGGTGACGGGCTAGGAAGTGAGAAGAAGCGGCAGATCCGTGCTCCTGAAAGCGCCTCGGTGACAATGGGAAAGATCGAGTGGGCGATGTGGGCTAATGAACAAGCCCTGGCGGCTGGACTCAtttacCTCGCCGGTGGCATTGTAGGAGTGGCAGGGCAGTTCAGAGACTGGCAGTTCGCTGCTTATGGGATAGCTGCgggtgtgttcgtgtgtgtgctggagtaCCCACGCAGCAGGAGAGCCAAAGGAACCAGTGTTGCGAGAACtggtCAATATTGCTTCACCATGTGTGTAAAGGCATTTGGGCCCTTGACTAGAAATTATTATGTTAGAGCGATACTTCATGCACTGCTCAGTGTCCCTGGAGGTTTCATGCTGGCTACAGTTTTAGGCTGTGTATGTCTTGGAATAGCCAGCCTCATCTATCTGTCAGCTGCCATTCACGGCGAGCACTGGGAACCCATTTTGCCGAAGGCAGAACCCGTCAAACGCATCGCTCCTAGCATCAAGCAGCCGCCTCAGAACCCCCCGCCGCGTCCTCCTCCTGAGATGCGCAGGAAGAGAACAGATGACCTCGAGGCTGCATCGTACGTCAATCCCATATCTGTTACTGCCGACGAACAATGAATGGCCAAATCGCTCCATCGTAAGGAATCTAATTCAGCTGCCACAGTGGGAGAGGACTGAGTACCTGCTGTACAAACGAGACGGGAGTGCATACCTGCTGAACTGCAGAATTATTCTGTTCATGACGATGAATGATGTTTAAAGAGATGTGTTTGGTTCAGTTTGCAGTTTTAATGGCATGTTACTGTTTATTTCATGAGAGTTTTTGTGAGATATTTTACAAGAAGGTGGTCGCTCACTGATTATTCTGCTTCTATTGCACTGTGGAGAAGATTTATACAGAAGATTtgtacagttgagtgcaaaagtttgcacacccttacaTCAAAAACATGAAACCAGCAAGAGATGTAATGCAAGTTAGGGTTTTACAGATGTTCCCTTAATATCCCAAGTAACGAAATTAGCCAACAGTGTATGACAAGATACTCGTagtgaaacaaatgaaataatatttctgaATCCTGAGTTTCATTCCACTTGCCTCTTAGGATTTTATCGTCCACTCTGTGGTCATGTCGTTGTCACAGCAAACTGCTCCAGAGTTTGAGCCTGTTTGAACTTTTAATGCCTTAAGTATGAATTGTTGACAATTTAATGaggcaaaattaaataaattaactaaaGTTTGTGAACAggaatgcaaacttttgagATTTCTAATAGAGATGACAGCACATTAGACTCATTTGCTATGATATTAAGatgcaacattttggaaaacattgaattctgtttctgtttttgttggtAACTGTAATATaggtgtattttttctttttttcttctatccAGAAACCAAGGAGGTACAAATATTTGCACTCAGTTGTACATTGTATATTTAAGTATTACTGTTCACTGGAAAATGCCAGTGTACACATGTCATACTGGATGATTTTTCCTGCTCAAACACACCAGAATAGTTAATATCCGCATTCATTTAGAAGGTGTGTATGAAGAGTAAAATCACCAAAAGGCTGAACTCGGGACCTCTGACTTCAAAGAAATGAAGGCAAAAGTTACTTCTGATTAATAATCTGATATGTGCTTGCTCATATGTAATCAATCTGtcagtgtatttatattatcacaaagtattttatattttaatatctacTCTGTACTAAAGAACAAATTGCAAGTGTAATGAAAAGTCTGATAACCTGATTTATCTGTAacaataaatctgtttttatttgaa

Function

GO: NA

KEGG:

id description
K08009 CYBA, P22PHOX; cytochrome b-245, alpha polypeptide

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125500 lncRNA upstream 360217 27726402 ~ 27729161 (+) True G106118
TU125432 lncRNA upstream 486644 27602158 ~ 27602734 (+) True G106064
TU125360 lncRNA upstream 543861 27543059 ~ 27545517 (+) False ddx11
TU125340 lncRNA upstream 590748 27498431 ~ 27498630 (+) True G105981
TU125251 lncRNA upstream 855154 27229784 ~ 27234224 (+) True G105904
TU125760 lncRNA downstream 1903 28097729 ~ 28098001 (+) True G106343
XR_004578326.1 lncRNA downstream 137981 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA downstream 137981 28233807 ~ 28244868 (+) False LOC117597547
TU125917 lncRNA downstream 294372 28390198 ~ 28450197 (+) True G106477
XR_003402825.2 lncRNA downstream 334177 28430003 ~ 28448635 (+) True LOC113526961
XM_026914143.2 mRNA upstream 953 28080997 ~ 28088425 (+) True mvda
XM_026913309.2 mRNA upstream 10491 28071684 ~ 28078887 (+) True pdcd5
XM_026913310.2 mRNA upstream 10491 28071715 ~ 28078887 (+) False pdcd5
XM_026914079.2 mRNA upstream 18750 28066882 ~ 28070628 (+) False uraha
XM_026914374.2 mRNA downstream 2570 28098396 ~ 28114961 (+) True tcf25
XM_026914242.2 mRNA downstream 23198 28119024 ~ 28123920 (+) True mc1r
XM_034305483.1 mRNA downstream 23198 28119024 ~ 28123920 (+) False mc1r
XM_026914241.2 mRNA downstream 38016 28133842 ~ 28141732 (+) True LOC113526844
XM_034305485.1 mRNA downstream 50437 28146263 ~ 28161869 (+) True def8
TU125683 other upstream 18693 28066912 ~ 28070685 (+) True uraha
XR_003402810.2 other upstream 123070 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other upstream 127607 27959525 ~ 27961771 (+) False LOC113526832
trnal-caa_9 other upstream 528881 27560387 ~ 27560497 (+) True trnal-caa_9
trnal-caa_8 other upstream 530432 27558836 ~ 27558946 (+) True trnal-caa_8
XR_004578358.1 other downstream 50437 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other downstream 50437 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other downstream 50437 28146263 ~ 28161869 (+) False def8

Expression Profile