RNA id: XM_026914447.2


Basic Information

Item Value
RNA id XM_026914447.2
length 1552
RNA type mRNA
GC content 0.51
exon number 8
gene id taldo1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30258068 ~ 30265561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgtgctgttttgttttttttaaacccccgTGGCCGTGTCCTCGTGCTCGGAGCTGAAATTCTGTTGCGTCTCACGCGCGCACCTCGGTAACGGTATAAAAGGGTCCCCCTCGCAGCGCCATGTCCCAGTCGCCTGACAAACGCCGAAAGATGGAGTCTGCGCTCGAGCAGCTGAAGAAGCACACGGTAGTCGTTGCTGATACGGGAGATTTTAACGCGATCGAAGAGTACAAGCCTCAGGATGCCACCACGAACCCGTCGCTCATCCTGGCAGCGGCAAAGATGCCCACTTACCAGCACCTCGTGGACCAGGCGATTAAATATGGCATCGCTAACGGCGGGACCGAAGAGGAGCAGATCACGAACACGATGGACAAGCTGTTCGTCAGCTTCGGTGTGGAGATCCTGAAGAAGATCCCCGGTCGAGTCTCCACAGAGGTGGACGCCAGgTTATCGTTCGATAAAGACGAGATGGTGGCTCGCGCACGGCGGCTCATCTCTCTGTACGAGGAGGCCGGAGTGAGCAAGGACCGAGTGCTCATCAAGCTTTCTTCCACGTGGGAGGGCATCCAGGCCGGGCGGGAGCTGGAGGAGAAATATGGCATCCACTGCAACATGACCCTGCTGTTCTCCTTCGCGCAGGCGGTGGCTTGCGCCGAGGCAAAGGTCACGCTCATTTCACCTTTCGTCGGCCGCATACTGGACTGGTACAAAGAAAACACCGAGCGCAAAACCTACGAGCCGCACGAGGACCCCGGTGTGATAAGCGTCACGAAGATCTATAACTACTACAAGAAGTTTGATTACAGCACCGTGGTGATGGGCGCGTCCTTCAGGAACACCGGAGAGGTCAAGGCGTTGGCTGGATGTGATCTTCTCACCATTTCTCCAGGGCTGCTGGGAGAACTGAGCCAGGATCACGCCGCTGTGTCCTGCACTCTCGCTCCGGAGAAAGCGAAGGCTTGTGATCTGGAGAAGCTCCACCTGGATGAGAAGACCTTCCGCTGGCTGCACAACGAGGACCGCATGGCCGTGGAGAAGCTCTCAGACGGCATCCGGAAATTTGCAGCGGACGCGGTGAAGCTCGAGGGCATGATCAAGGAGAAGATGCTCGGTGTGAAAAACGGACAGTAACGCCGATTAAAACCCGAGAAACTCCTGATGAGCCTGTCGCTATTGGCTGAAACGCTGAACTTGCTTCCGAAGCTGAAACTCATTCCGTAGTCTTAAACCTCAGACCACTAAGAGCTCCTGCACTAATCATAAACTGTGTGTCTGTTCAGGGATAAAGTCCTCCAAGAATCAAACATTCctatttttactattattattattattattattattattattaaaaactggGATATTAATAGAAGAACCAAAAACAATAATGTGTGTTTAAGGGGAAAACACGGTACCCAAGGGACTAAAGACAACATGGTGTCCAcatctgttatgttttttattattatcagtttaTAACAAATCAACCAATCACCCTTCAGATCCACTCTTGCTTCACGGTTTCAATAAAGAAACGATATCGCGAAAA

Function

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0005737 cytoplasm cellular_component
GO:0004801 sedoheptulose-7-phosphate molecular_function

KEGG:

id description
K00616 E2.2.1.2, talA, talB; transaldolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126737 lncRNA upstream 193630 29971482 ~ 30064438 (+) True G107223
TU126736 lncRNA upstream 286975 29970878 ~ 29971093 (+) True G107222
TU126730 lncRNA upstream 334996 29922752 ~ 29923072 (+) True G107216
TU126633 lncRNA upstream 568252 29685374 ~ 29689816 (+) True G107140
TU126561 lncRNA upstream 775604 29482234 ~ 29482464 (+) True G107075
TU126913 lncRNA downstream 96029 30361590 ~ 30429223 (+) True G107387
TU126894 lncRNA downstream 128699 30394260 ~ 30498315 (+) False dnaja2b
TU126896 lncRNA downstream 128699 30394260 ~ 30498315 (+) False dnaja2b
TU126898 lncRNA downstream 128699 30394260 ~ 30498315 (+) False dnaja2b
TU126897 lncRNA downstream 128934 30394495 ~ 30498315 (+) False dnaja2b
XM_034305375.1 mRNA upstream 131846 30106693 ~ 30126222 (+) True ddb1
XM_034304986.1 mRNA upstream 534001 29716593 ~ 29724067 (+) True iqcg
XM_034304985.1 mRNA upstream 707772 29520447 ~ 29550296 (+) True LOC117597519
XM_034305076.1 mRNA upstream 1453996 28799464 ~ 28804072 (+) False cmc2
XM_026914161.2 mRNA upstream 1454003 28799644 ~ 28804065 (+) True cmc2
XM_034304956.1 mRNA downstream 6983 30272544 ~ 30285534 (+) True cd151l
XM_034304955.1 mRNA downstream 6983 30272544 ~ 30285534 (+) False cd151l
XM_034305470.1 mRNA downstream 39071 30304632 ~ 30305794 (+) True LOC117597588
XM_034304987.1 mRNA downstream 45672 30311233 ~ 30353488 (+) True b4galnt3b
XM_034304988.1 mRNA downstream 100058 30365619 ~ 30408560 (+) True c2cd5
XR_004578358.1 other upstream 2096199 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2096199 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2096199 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2187383 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2296297 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile