RNA id: XM_026914471.2


Basic Information

Item Value
RNA id XM_026914471.2
length 1677
RNA type mRNA
GC content 0.43
exon number 8
gene id yif1b
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25268893 ~ 25282220 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACGGACGTCATATGGGTAAGATTACGTCACTCGGGTTGAGGGGAAAAGAAGCCGGTATCTTTGGAGATGAATACGAAAGTAATCTCATATAAAGTCGAGTTATGaaaatagtgtttttaacatttactaATCGAAGAgaagtgtaatatatatatatttatttttcgtGAGGATGGATTACACGAATCAGAGTGGGTTCAGACAGCGTAAGTTACaagCCAGGGCGAGGATGAGGGCTCCTGGCTCAGACTCTGGTGAACCCAGTCAGCTTTTTGATGACACCAGTGCTGGACAATACAACTCTGGACCTGGCAGCATGGACAAAGGAGGGATGGACTACGCAGGACAGGCCATCCTCTCAGATCCAATGTCCAATCTCGCTATGGCTTATGGGAGCAGTCTCGCAAGCCAGGGCAAACAAATGATGGATAAAAACCTTGACCGTTTCATCCCCATTTCCaaactgaaatattattttgctGTGGACACCGTTTATGTTGGCAAGAAGCTGGGACTGCTGGTATTCCCCTATATGCATGAGAACTGGGAGGTGAGTTACCAGCAGGATACTCCAGTAGCTCCACGCTTTGATGTCAATGCTCCGGACCTGTACATTCCCTCAATGGCTTTCATCACATATGTCCTGGTTGCAGGCCTGGCCCTTGGCACACAGAACCGGTTTTCCCCTGAGATCTTGGGGATGCAGGCTAGCTCAGCCCTGGTCTGGCTCATTATTGAAGTTCTTGCTGTTCTCCTCAGCCTTTATCTGGTCACAGTGAACACAGACCTCACCACCATCGATCTGGTGGCCTTTTCTGGATACAAATATGTTGGGATGATAGTAGGAGTGTTAGCTGGGCTCCTGTTTGGAAAGACAGGATATTATCTCTCACTATTCTGGTGctgtgcttccatctttgtcTTTATGATCCGAACACTGAGGTTAAAGATTCTGTCCGAGGCGGCTGCAGAGGGTGTTCTGGTCCGAGGAGCCAAGAATCAGCTGCGCATGTACTTGACCATGGCCATTGCTGCAGCACAGCCTGTGTTCATGTACTGGCTAACTTTCCACCTGATTAGGTAAGAAGTGGAGCCACATGACGCGACCAATGATAATGAAGGACGCTACCACTACAGCCATGACTGAAACACTCACTCAGTCCTCCTCAGAAGAGACTTGAAGCAAGGAGAGTCCATTTGCACAAATGCAAACAAACGAACAAGCATTGTGAAGGCTCACATTCAACAGTAGCTGTGTTAAGTCAGTTACGTTCCACTTGTACATTTATAAGATGGactattagcttttttttttttgtttttgtttttgtacgATATAGAGTGCAATTAttagtataattattattttttaaaacaatgtgaACATTTGAAATACAGGCTGAAAATGTATATTTGAGCCAGTCTGCAGAGTTTACTCCAACATCCAGGTAGCTGTTAACACCAAATACCTGTTATATCTTTGCTTTTGACTATGTCCATTTgtatctgtgtatgtatatgcatttctctgctactgatttgaagaaaaaaaaaaaaaaaaaaaaaaagcaaaatatgtctgtatgtaacTACTGTAAAGTGCTTTAAAGGACTTATTCAGATGGTGTGGCAAACAAAAGCCTGacctttttttgtaattaaaacaaTGACACAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20362 YIF1; protein transport protein YIF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123938 lncRNA upstream 23028 25245664 ~ 25245865 (+) True G104751
TU123930 lncRNA upstream 25015 25243481 ~ 25243878 (+) True G104748
TU123921 lncRNA upstream 25588 25242800 ~ 25243305 (+) True G104739
TU123920 lncRNA upstream 29437 25233643 ~ 25239456 (+) False LOC113526839
TU123714 lncRNA upstream 207593 25057875 ~ 25061300 (+) True G104554
TU123977 lncRNA downstream 12679 25294899 ~ 25304404 (+) False G104781
TU123980 lncRNA downstream 12679 25294899 ~ 25304404 (+) False G104781
XR_004578347.1 lncRNA downstream 58403 25340623 ~ 25342308 (+) True LOC117597584
TU124338 lncRNA downstream 621606 25903826 ~ 25905288 (+) True G105118
TU124552 lncRNA downstream 1037789 26320009 ~ 26323500 (+) True G105320
XM_026914077.2 mRNA upstream 2036 25250342 ~ 25266857 (+) True si:ch211-136a13.1
XM_026914236.2 mRNA upstream 28680 25233625 ~ 25240213 (+) True LOC113526839
XM_026913562.2 mRNA upstream 113794 25140152 ~ 25155099 (+) True hnrnpul1
XM_034305166.1 mRNA upstream 129332 25137014 ~ 25139561 (+) True opa3
XM_026913986.2 mRNA upstream 228804 25035517 ~ 25040089 (+) False exosc5
XM_026914414.2 mRNA downstream 485198 25767418 ~ 25777506 (+) True dusp8b
XM_034305191.1 mRNA downstream 506418 25788638 ~ 25839289 (+) True mob2b
XM_026913866.2 mRNA downstream 506418 25788638 ~ 25839289 (+) False mob2b
XM_026913867.2 mRNA downstream 506418 25788638 ~ 25839289 (+) False mob2b
XM_026913863.2 mRNA downstream 533621 25815841 ~ 25839289 (+) False mob2b
TU122935 other upstream 1526578 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 1639170 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 1994384 23274359 ~ 23274509 (+) True LOC113527008
XR_003402831.1 other upstream 1995435 23273308 ~ 23273458 (+) True LOC113527009
XR_003402832.2 other upstream 1996685 23272058 ~ 23272208 (+) True LOC113527010
TU123976 other downstream 12679 25294899 ~ 25306811 (+) True G104781
TU123982 other downstream 12679 25294899 ~ 25315213 (+) False G104781
TU124829 other downstream 1548758 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 1929169 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 2276616 27558836 ~ 27558946 (+) True trnal-caa_8

Expression Profile