RNA id: XM_026926983.2


Basic Information

Item Value
RNA id XM_026926983.2
length 3099
RNA type mRNA
GC content 0.44
exon number 12
gene id necab2
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14885256 ~ 14969007 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCATGTAATAAAACTATGTTCTGTTCAATTTGTAAAGTACACTCTGCGCTTTCATTGGATATATATTTAGTTAGTATCAGTTATTTGATTCAAGAGATATGAGAGCCAAACTGACCAAACCCGTGTTCAGTACAAAAACTGTACATAGCCTAAACACACAATTACTGCTGCAATAAGGTAGCTTACAGAGAGCAAAGAGAGATCTCCAGAAGAATAACCAAAATGATCTTTTTAGTGAAATTATGGGTTATGAGACCCACTCCTCACAAAGCAGCAGCTGTACGTTTTCagaggttagtgtgtgtgtgtgtgtgtgtgtcgtgagCTCTGATGTCAGAGGGGGGGAGGGCATCGCCCCCATAGCGCGCAGCATGAACGCAGCGCGGCAAAGAGGATGTGCGAGCAAGCAGCGCGCTACTGCAGGGACGGTGTCCACAAGCTGCTCCACAAGGACCAAGCCAAGCTGCGGGCGCAGGACAGCGGCGAGCAGACTAGATTCCCCGCGCAGAGCAGCGAGACCGCGACGGCGGCGCAGCCCGGGAACGGCGGCTCACAGCCCGGCGCCATAGACGGGCTTGTGCGCTGGATCGTCACCAAGATGAGCGACAACAAGAGCATCTCGACGCGCGAGTACGGCAAGGAGGAAGCGGCTGCGGCGCAAGAGCAATTCTTCGCTCCGGAGCCGCGCAAAGGCATTTCAGTCATCCTAGACATATTCCGGAGAGCTGATAaggatgATGACGGAAAGCTTTCCCTGGATGAGTTCCAGGCCTTCTTCTCCGATGGGACCCTGAATGAAGAAGAACTGGAGAATCTTTTCCACACCATTGATTCTGATAACACCAGTAATGTTGACACTAAGGAACTTTGTGACTACTTTGCCAAACACATGGGGGATTATGAAGGTGTGCTTGCATCCCTGGAGACACTCAACCTTTCCATCCTTAAAGCCATGGATTTCACCAAGAAGGTGTATGAAAGAGGAACTAATATTGAACAGTTTGTGACTCGCTTCTTGTTGAAGgaatcagccaatcaaatcCAGTCTTTGCTCAACTCTGTGGAGAGCGCAGTGGATGCTATTGATGAACAGCATTGCCCTCCGGGATCTTACCACAGTAAGACCAGTCCACGTGTTACCGAGAGGCACTATGAAGCTCCAGTGCCAGACTACCCACCCAATAACAGAGTTAGTGCCAAGGACAGCATGAGGAATCTGAATGTGGGCTCAGGACCTGTCGAGGTGAGGAAAGAAGGCCTGGAAATGCAGATCAACCGTCTGGCTGAGCTGATTGGACGCCTGGAGAACAAGTCCCTCTACCTGATTCGCCAAGAGATGAAGGTATCCCAGAAGCAGCTGGGAGAGTTCTGTGAGGCTCTGAAGCAGTATCTGAAGAATGTCTCTGCCCAGAGGGACTGTTtccaCGTGACTGCAGTGCGGCTTCCTGACGGCCTCTCTTTCGTTGTGTATGAGTTCTGGGATGGGGAGGAGGAATGGAAAAGACACCTCCAGAGTGCAGCCTGCAAGGCCTTCCAGCATGTGAAAGTGGACACACTGTGCCAGCCTGAGGTCATGTCCACTGTGGCTGTGCCAGCCGCTTGGTGCAGCCTTAGCCGAGACTGATTGGAGCCAGTGTGGACGGCCAGGGTGGAAGGCCTCATCTTACACCTGAATAGCCACGCGCCTCCTCTTTCCCTTCATATATACCCCTCTCCTTAAGCCTCTATATCTCCCATGATCTCTCTAAGCTCCCTCTATCTCTGCTcccctttctccctctcttttgtAACTACTGTTTACATGCTGTTGGTTTGACTGCAAAGAATGTGAAATATCATAGCAGTCCTCCTTAATGCTGTTAAGGTTGCTTTCAGGAATAGTATGTAATACTCTCTGGACTGTTTTATGGCTTCTGGGTGGatcaaaacagtgaaaatgaaagtaTACATATTAGTAATCTCTGGTTACAATAACAGAAATCTGAGTAATTTTAATCCCTGTTTGGTAAACTGCAAATGCACAAACATGCATTGCATTGCTGGTCCATTGCTCTGCTTCTCTGAGAACATCCAGCAGCTGAAGGTTTTAACATGTTATGGATGCTAATATCCGGCAGGGTGTAATGGCCAATTGATCTGCAGTTTTCAGCTAATAGTATTTAATCTACTTGGGCAAAGTGCACAACCAGAGACCCAGAGCAGCAGcatcaaataaatgaaagaattgtgtaataaatgtttACTTAAATGAAGTTTACAGATCTAGACAAAACCTGACATGCTGAGAGAAAATAGTCTTGAAATATTTTAGCTTAAAACAGAACTATATGGATTGTTTATTGATAGTAAATATATTGGTTGTGGAACATTTATACTGAGTGAAATGAACTCATGTCCTCTAACACTAATTCCCATAAATCTTTTGTTGTGCATTTCATAACCTAATTTAGTGAACAGTTCACTGTTTACAAAGAGACTTACACAACATGATATGAAAATGAACTGTTAATCCTTATGAATTATATAACAATCAAAATCTCACCACCTCGAACCAAACAGCCTCATTACTAATTACGGCATGTAGGCTTGATGTATTTGTGAATGGAAATTTGTCAAATTGCTTGTGGGCTCCTGTATGATGTGAACCGGTCCAAACGAAGGTGAAGCAAATGTCCACAATACTGTGGAACATTCCTTGCCGTTTCCTTCCCCATGAAACTTGGCTTCACTTTCCCCATCCCTCATGTGAGTGCATGTTCCAATGAATGTCCAGTAACTTATCTGCTGtagtatttagatatgctacTTTCAATGGATTTTGTGCATTTCTTAATTTTGTATTACTTAaattaggaacacctgaactgagaaatacataaacataaGAAATCAAGTATGAACAGGCACTTTTATGGCATTGTTTAACAAAACACTAATTCTTATACCTGTGTATGTTTCCGTAAAAACTAGCTTTCTCTTAAAATTGATTGTAGAGACTTATTGCAGGGATGCAAATATTATATTTGTCTTAACTTTGTTAACCTAGATTATGTAGTGATGTAATTCTATAGAATTAAAGGTCTAACGTGAATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118023 lncRNA upstream 155073 14729984 ~ 14730183 (+) True G99518
TU118021 lncRNA upstream 159318 14725618 ~ 14725938 (+) True G99516
TU117806 lncRNA upstream 253895 14630335 ~ 14631361 (+) True G99362
TU117693 lncRNA upstream 566602 14317597 ~ 14318654 (+) True G99276
TU117678 lncRNA upstream 622739 14261441 ~ 14262517 (+) True G99261
TU118233 lncRNA downstream 57480 15026487 ~ 15027086 (+) True G99704
TU118234 lncRNA downstream 86260 15055267 ~ 15058771 (+) True G99705
TU118304 lncRNA downstream 202325 15171332 ~ 15173435 (+) True G99766
TU118332 lncRNA downstream 207229 15176236 ~ 15180771 (+) True G99786
TU118362 lncRNA downstream 246384 15215391 ~ 15215716 (+) True G99813
XM_034305422.1 mRNA upstream 7777 14784940 ~ 14877479 (+) True hydin
XM_034305421.1 mRNA upstream 71708 14784940 ~ 14813548 (+) False hydin
XM_026927058.2 mRNA upstream 175829 14695777 ~ 14709427 (+) True chka
XM_026927225.2 mRNA upstream 198778 14676544 ~ 14686478 (+) True kmt5b
XM_026927226.2 mRNA upstream 198778 14676544 ~ 14686478 (+) False kmt5b
XM_026927201.2 mRNA downstream 162258 15131265 ~ 15170919 (+) True ranbp10
XM_026927202.2 mRNA downstream 162258 15131265 ~ 15170919 (+) False ranbp10
XM_026927222.2 mRNA downstream 246043 15215050 ~ 15291450 (+) False ripor1
XM_026927221.2 mRNA downstream 261427 15230434 ~ 15291450 (+) True ripor1
XM_026927220.2 mRNA downstream 281793 15250800 ~ 15291450 (+) False ripor1
TU117779 other upstream 360776 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 844474 14035230 ~ 14040782 (+) False skor1b
TU117337 other upstream 1095866 13785095 ~ 13789390 (+) False G98972
TU117309 other upstream 1169490 13691607 ~ 13715766 (+) True G98946
XR_004578350.1 other upstream 2029703 12837299 ~ 12855553 (+) False nlrc5
XR_004578337.1 other downstream 331475 15300482 ~ 15345968 (+) False carmil2
TU118902 other downstream 1380450 16349457 ~ 16349787 (+) True G100306
TU118951 other downstream 1631250 16600257 ~ 16601067 (+) True G100345
XR_004578324.1 other downstream 2431419 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 2520539 17489546 ~ 17493092 (+) False LOC113539654

Expression Profile