RNA id: XR_004578308.1


Basic Information

Item Value
RNA id XR_004578308.1
length 2477
RNA type misc_RNA
GC content 0.56
exon number 7
gene id skor1b
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14035228 ~ 14042452 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATACGCCGGCGCTAAGTGGGAGTGCCTCGCCATTAGTTTAGCTGTCAGTCGATCTCCGGCGCGCGCGATCTCCGCTGCTTTAGGTGAGAACGGCGCGCGCTGGCACGCGGACACTGTGCGCGGAGTGCAGCATGCAGAGCCACGCGCTCTAAACACGCACAGTGCGACTCCATGCAGCCGGATTCCCAGACTCTGAGCACAACAAGAAGAAACCCACTCAAgacaacataataataaataaatatacacacatttcttaAAGGAGGTGGCTGGCGAGATCTCTACATATCAGActcagagctgcttttctctTCAAATAAGATTTCCAGGAATGGAATCTATATCGAGCCAGCTATCAGCCGGAAGAGATTCCACCTGTTCACCAAACTCCAAGCAGGAGCTGCAGTCCTACACCGGCACCACACTCAAACCCAACCAAGTCAGCGAGACCTCCCTGTACGGAATACCCATCGTCTCCTTGGTCATAGATGGCCAAGAACGACTGTGTCTGGCCCAGATTTCCAACACCCTCTTGAAGAACTATAGCTATAACGAAATCCACAACCGGCGTGTGGCTCTGGGCATCACCTGTGTGCAGTGCACGCCAGTTCAGCTGGAGATCCTGAGGCGCGCAGGGGCTATGCCCATCTCCTCCCGGCGCTGCGGGATGATCACCAAGCGCGAAGCAGAGCGCCTCTGCAAGTCGTTCCTGGGCGAACACAACCCGCCCAAACTGCCCGAAAACTTCGCTTTCGACGTGTCGCACGAGTGCGCGTGGGGCTGCCGCGGCAGCTTTATCCCGGCCCGGTACAACAGCTCCAGAGCGAAATGCATAAAGTGCTCGTTCTGCAACATGTATTTCTCACCAAACaaattcatatttcattctCATCGCACGCCCGAGTCCAAGTACACGCAGCCCGACGCGGCAAACTTCAACTCGTGGAGACGGCACCTAAAGCTGACGGACAAAAGCTCTTCGGAAGACGTGATCCACGCCTGGGAGGACGTGAAGGCCATGTTTAACGGAGGCAGCCGGAAGAGGACACTGCCTGTGCACGGCTCTGAGTCTTCCTCCTCACTGAAATCACATGGCCCCGTGAGTCGAGCCCAGGGCAGTCCATCTGAGGTGCCCCATAAAACCCTTCGCTGTGAAGACGACAGAGCCACAGTGCCCATCCCGAGTGGCATCCGCAGTTACCCCGTCATCCCGGTGCCCAGCAAGAGTTTTGGGATGCTGCAGAAGATTCCGCCACCCCTCTTCCCTCATCCCTACGGCTTCCAGGCTTTTGGACTGTGTCAGAAGAAAGACGACGGCGTGGTAGGCGAGCAGAGTAAAACTAACTTGCCTGGGGTATTCTGGCCAGGCGCGAAGGACAGCGCTTACCCTTCGTTTCCCATGTTTTGGCCCACGGCAAGTGGCCTGCCCATGGCTCCTTACCACCACGCGCCGCCGAAGCCGCCTCCCGACGTCCTTTGCGCACGGCAGCACGAGTTCGATGCGTCGGAGCCGAGTGAGAGGAGCGCCAGCACACCCAAGGACAGCGTGATGGAGAACGAGCGCTGCTCCAGCACGCAGTCCAGCCGCAACGACGAGGACAAATCCGGGGATGAGACCAGACCCACGGAAAGCATGCCGAGAAAAACCAGCTACGTATCAGCCTTCAGGCCTGTCGTTAAGGACACAGAGAGTATAGCAAAGCTGTACGGCAGCAGAGGCCCGTATTCGGGACCCAGGCCCGGTTACCTGTCTCCTGACTTCCTGAGCGAGAGTTCCAGTTACAGGTCAGCATCTCCGGACGTGGACGACAGCGCGGAGGACCCGGATGTAGACGTGGAGTCACACAAAGTACAAGAAGACGAAGAATGCCTTCAGCTTGCAGTGGACGACCACCACAGCCCACCAGCTCTCCCTGCTCACGTGCACGGCGATGGAGGGAAAGGTCAAGCAGAGGAAACCAGCAGAATGAGTGatccacacactacacacacgaGCGAGGCAGAGAAGCAGAACAAACCGCTGCCGGAGAGCAACAAACCTGCAACGCGCTATGAAGTGTACACGCATGAAAGGATTGCGCCCTTGTATCAGATGAGTGCGCCATGTTTCGGCTCCACAGCCACTTACCAGCGCGACTCCAGCGGTAAAGACGCGCACGAGGAGGAGCCTTCATCCACAGTAGAGGAGATAAGCGCACCGAAACCACTGCACGAGCACACCAGCGCTCCTGAAGGAGGCCCCAGAGAACCCGAGGATCTGGAAGCTATGCGCAGTGAAACAGGCAGAGTGTCACTGATTGAAAAAACATCGAAAACATGGCGAAagAAGAGCTGCAAAAACAGCTAGTGGAACAAGTGGAGCTGAGAAAGAAGCTGGAACGGGAATTCCAAAGTCTGAAAGACAATTTTCAAGACCAAATGAAAAGGGAGCTGTCATACCGAGAAGAGATGGTCCAGCAGCTGCAGATTGTTCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117377 lncRNA upstream 45077 13989942 ~ 13990153 (+) True G99006
TU117370 lncRNA upstream 78963 13954636 ~ 13956267 (+) False smad3b
TU117364 lncRNA upstream 110917 13891424 ~ 13924313 (+) True G98996
XR_003403505.2 lncRNA upstream 189085 13837717 ~ 13846145 (+) True LOC113534555
TU117355 lncRNA upstream 196874 13837848 ~ 13838356 (+) False LOC113534555
TU117677 lncRNA downstream 217130 14257912 ~ 14260742 (+) True G99260
TU117678 lncRNA downstream 220659 14261441 ~ 14262517 (+) True G99261
TU117693 lncRNA downstream 276815 14317597 ~ 14318654 (+) True G99276
TU117806 lncRNA downstream 589553 14630335 ~ 14631361 (+) True G99362
TU118021 lncRNA downstream 684836 14725618 ~ 14725938 (+) True G99516
XM_026926957.2 mRNA upstream 7763 13961829 ~ 14027467 (+) True iqch
XM_034305086.1 mRNA upstream 43863 13961829 ~ 13991367 (+) False iqch
XM_026926962.2 mRNA upstream 47045 13986824 ~ 13988185 (+) True c6h15orf61
XM_026926956.2 mRNA upstream 48518 13961829 ~ 13986712 (+) False iqch
XM_026926961.2 mRNA upstream 48518 13961829 ~ 13986712 (+) False iqch
XM_026927395.2 mRNA downstream 5101 14045883 ~ 14073956 (+) False pias1b
XM_026927397.2 mRNA downstream 5103 14045885 ~ 14073956 (+) False pias1b
XM_026927398.2 mRNA downstream 5300 14046082 ~ 14073956 (+) False pias1b
XM_026927399.2 mRNA downstream 22554 14063336 ~ 14073956 (+) True pias1b
XM_026926928.2 mRNA downstream 37959 14078741 ~ 14088899 (+) True morf4l1
TU117337 other upstream 245840 13785095 ~ 13789390 (+) False G98972
TU117309 other upstream 319464 13691607 ~ 13715766 (+) True G98946
XR_004578350.1 other upstream 1179677 12837299 ~ 12855553 (+) False nlrc5
XR_003403541.1 other upstream 1771799 12263279 ~ 12263431 (+) True LOC113534848
XR_003403527.2 other upstream 2868428 11145154 ~ 11166802 (+) False vps9d1
TU117779 other downstream 480019 14520801 ~ 14524480 (+) True G99341
XR_004578337.1 other downstream 1259700 15300482 ~ 15345968 (+) False carmil2
TU118902 other downstream 2308675 16349457 ~ 16349787 (+) True G100306
TU118951 other downstream 2559475 16600257 ~ 16601067 (+) True G100345
XR_004578324.1 other downstream 3359644 17400426 ~ 17443468 (+) False LOC117597546

Expression Profile