RNA id: XM_026927092.2


Basic Information

Item Value
RNA id XM_026927092.2
length 5047
RNA type mRNA
GC content 0.50
exon number 25
gene id megf11
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13652058 ~ 13763456 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAGTGGGGAAGCGGACAGCGCTGTGCTGCTGTTGCGGTGTGCGCAGCCTCTTCAACAAGCTCCACAGTGCTCTGCTCACACAGCCTCTCTTCTCGATTTAAAACCCGTATGACAAACTTAAATGGCTATTTCTTTGCTGTTAAAAACAGAGAACTAAATTGTATACGAGAAAGCGGAGACTAAAATTTCACGCACGACGCCCGCGGATGGACGGACGGTGAACGACGGCTTTGAAAACAGGGACAAACCGTGAGCGTTCTGAGGTGCATTCCCTCAGTAGTGTAATCTGGTCTGAAGTAGTGGATATACTGTGAGAGGCCGTCCCCAGCCCCAGGCACAAACGTGTATATAACCACAGGTACAAGGAGTGGTCATGGGGCCTAGGCACTCCCCGATTCTAATCCAGCCTGTGCTGGCTGTATTGGTGCTCATTATGAGTGTGTGCTGTCTAAACCCGGATGACCCCAACGTCTGCAGTCACTGGGAGAGCTATGCAGTGACTGTGCAGGAGTCATACGCACATCCTTTTGACCAGATCTACTACACCAGATGCACAGACATACTCAACTGGTTCAAGTGCACCAGGCACAGGATCAGCTACAAAACAGCATACCGGAGAGGGGTACGGACTATGTACCGTCGCCGCTCCCAGTGCTGCCCAGGCTACTTTGAGAGTGGAGACTTGTGTGTCCcTCTGTGTACCGAAGAGTGCGCCCATGGCCGCTGTGTGTCCCCTGATACGTGTCAGTGTGAGCCGGGCTGGGGAGGACTGGACTGCTCCAGTGGCTGTGAGAGTGGCTACTGGGGACCTCATTGCAGTAACCGTTGTCAGTGTCAGAACGGAGCCCTGTGTAACCCCATCACTGGGGCTTGTGTCTGCACGGACGGCTACCAGGGCTGGCGATGTGAGGACCCCTGTGAGCCTGGCTACTATGGCAAGGGTTGCCAGCTGCAGTGCCAATGTCTTAACGGAGCCACCTGTCACCACGAGACAGGTGAATGCATCTGTGCCCCTGGGTATATGGGTGCTGTCTGCGGTGTGCGCTGTCCCTCCGGCAGTCATGGGACCCAGTGTGAGCAGCGCTGCCCCTGCCAGAATGGTGGAACCTGCCACCACATCACTGGAGAGTGCTCATGTCCAGCTGGTTGGACCGGGTCTGTGTGTGCCCAGCCCTGCCCATTAGGCAAATTTGGCATCAACTGCAGTAAGGACTGCTCGTGCCGTAATGGGGGACTGTGTGACCACATCACTGGACAATGCCAATGTATGGCAGGTTACACTGGCCGCAGGTGCCAGGAGGAATGCCCTGTCGGTACATATGGCCAGCAGTGTGCCCTCCATTGCGACTGTCAGAATGGGGCCAAGTGTTACCACATCAACGGCACCTGTCTATGTGACACAGGCTTTAAAGGACCTCATTGCCAGGAGAGATTCTGCCCCCCAGGGTTGTACGGGCTTATATGTGACAAATACTGCCCCTGTAATACTACGAATACTTTGAGctgtcaTCCTCTGTCAGGGGAATGCTCCTGTACAGCAGGGTGGACTGGTCTGTACTGCAACGAGATGTGTCCTCCGGGCTACTATGGTGAGGGCTGCAGTTTGAAGTGCCAATGTGCTAATGGAGCAGACTGTCATGGGGTCACTGGGGCCTGCATCTGTGCTCCTGGCTTCACAggAGAAGACTGCTCCCAGACATGTCCTTCTGGATTTTATGGAACTAACTGCTCATCTGCCTGTCACTGCCATAATCAAGCCTCCTGTTCTCCCATTGATGGCTCCTGCATTTGCAAAGAGGGCTGGCAGGGTGTGGACTGCTCCATCTTGTGCTCCAGTGGAACATGGGGTCTCGGCTGTAACCAGACCTGTATGTGCGTAAACGGGGCTGCCTGTGACCCCATCGATGGCTCTTGCTCCTGCACACCAGGCTGGAGGGGGAAGCACTGCCAGCTGCCTTgccctGATGGCACCTACGGGCTGGAGTGTCGGGAGCACTGTGACTGTAATCATGCCAACGGATGTGATCCCATCAGTGGCTACTGCCTCTGTTTGGCAGGATGGACTGgTATCCACTGTGACAGTGTCTGCCCTCAGGGCTTCTGGGGGCCAAACTGCTCCATGACCTGCTCATGCCAGAATGGAGGCTCATGCTCCCCTGAAGATGGCACCTGTGTGTGCGCTCCGGGCTACCGTGGCACATCCTGCAAAAGATTGTGTCCCAGTGGCAGGTATGGGAAAGCTTGTGCTGAAGTGTGTCTCTGCATGAACAACGGCACATGCAACCCTATTGACGGCTCCTGCCAGTGCCTCCCCGGCTGGATTGGAGATGACTGTTCACAGGCATGTCCTATAGGGCAGTGGGGTCCTGACTGCCTCAACTCATGCAACTGTCACAACGGCGCCCAGTGTAGTGCCTATGATGGGGAGTGCAGGTGCAGCCCTGGCTGGACGGGCCTTTACTGCACACAGGGCTGCCCATCGGGCTTCTATGGGCATGACTGCGCTGAGGTGTGTCGCTGTCAGAACGGAGCAGATTGTGAGCACATCACAGGCCAGTGTACCTGTCGCACAGGCTTCATTGGTAGCAGCTGCGAGCAAAAGTGTCCTCCTGGGACTTTCGGCTATGGTTGTCAGCAACTGTGTGAGTGCATGAACAATGCCACCTGTGACTATGTGACTGGAACCTGTTACTGCAGTCCTGGATACAAAGGAATTCGCTGTGACCAGGcGGCTCTGATGATGGAGGAGCTGAACCCCTACACTAAGATCAGTCCAGCCCTGAGCTCCGAGCGCCAGTCAGCTGGTGCCGTCATGGGCATCATCTTCCTACTCCTCATCATCATGGCCATGCTTAGCCTATTTGTGTGGTACAAACAGAGGCAGAGGGAGAAGGGTCAGGACATGCCGAGTGTGTCCTACACACCAGCCCTGCACATCACCAACACTGACTACTCACTCTCTGACACATCTCAGAGCAGCAGTGGCCAGTGTTTCTCCAACCCCAGTTACCACACTGTGGCCCAGTGCAACATTCCCTCCTCCAACACTAACAATCTGGATGGCACTCTAACTCTGAAGAAAGGGGATAGGAGCAACTCAGAATGGAGAGCATACTGCAATCTGAATGACCTTGGTGTGTCACGAGAGGATACACTGATAGTGCAAGACAACAAAACCACTCAAGTTGCTAAAGACTACATCAAGCCATCCATGTGCAGCTCCAGCTCATGCTCTCTGAATAGTGAGAATCCATATGCCACCATCCGGGACCCACCAGGTCTGACCTGCAAGCACACAGAGAGCAGCTACGTGGAGATGAAGTCTCCTGCACACAGGGACTTGGCCTTCTGCACCAGCACTAACACTACCACCCGCACCTCTGCAAGCAGGAACATCTATGACATGGAACCCACAGTGAGTGTCCTACAGGGACCCAATGGCCTGGCGACTGGTTTCTCCCAGAACCCTTATGACCTTCCTCGGAACAGCCACATCCCGAGCCACTACGACATCCTGCCCATGCGCCacagccccacacacaccccgCCCTGAGAGCCCCCCCAGCTCCTTGCTGTAGAGCCCAGCCCTGAGCCTACCTCTACACTACAGCAAGCACCACCTGCTTCTGCAGGACCTCCTCTTGTCAATCTTTTTATCTTATCACATATTTCCATCTCCTTCCCGGATACACACAGATGCATGACAAGATGGCTATGAATTCTGTAACATAGTTTTGCTGGATTGgtatgtgtctatgtgtgtgtgtgggacatcAGATGGCTAAGAAAGGATTGTACAAAGATCTGTAAAGATATTAGCAACTACtcacttctctcttctcttcattcACTTCCCTGGAAGGTAAAAGGTTTTCATTGAGAATGCTGGACAGAGGACtgagaagaaaacacacatccTGTATTCTGTATCTAATTGTGTATATTGCAGTAAACTAATAGACTATCAAGGCACTCTTGTGTTGAAGAATTTCCATACAAACGAGCTGTCTCCAGTTGTAGAAGGAACATAGTCTCAGTGATTCGCTGGTCAGTAGCTTAAGCAGAGGGTGAAGTTGACCCAATCACCTGTTCCCTAAAGCAATCAGGGACTGACTCTGGCCATCTAATCAGAGCCAATGGATACTGTCACCTACAGGGGACGTGTCACTGCTGCCCTTGACTATTTGAAGAGGACTGAAAAGACCTTAGTGAGAAAGCATGGCTTAATAGTAAATGGTTAAATAGTAAGACCATTtagtttttactgtttaaagACAATTACCAAAATGAGTTTTTGAGAACCATCAGTTTTTCTTCATAACACAATAGAAGTAtaattctttaaacatttcataaagtattttaaaatctgctgAGGTAGAGCACAGCtctttataaaagatttatgagaaaaacagcagcttgATATACACTGTACAATGTTCTTAATACCACTAGTCTATATTAAACTGCTGTTTCATCCAAAAAACATTGATGGATGGTTATATATCACGTTTGCAGGTGTGATGTCATGTGAATGTATATTCAAGACTGTAtactaaagttttttttttttttttagtaaatatatattatttgttgtttctgtttatatttttaaaatcctggtggttggatcttaagagagcttttgtttttgtgtttatttgtaacATTTGCTTAAACAGCAGTTTTGTTTTCCATAAAGGTGTAAAGTTTAAATAGAAAACAATCTAGCATGAACAAATTATATCAAATGATGCTTAATTCATTTCTTGTGACTGTACCACCCATGCACACTAGCGATACACAATGTAAGTTATCTTTTTTGTCTAAGTAGATGCATTACAGTGGGCAGTGATCACCTACATATCGTTTGGAGACATTTCCTGAATCTTGTTTCATATGAAGTTCAGTTTGGTAATTCTGCTTGCTTGTTTTGTGCAATGCTCTAAATGTGGCCCCATTCCCCTCACTAAAGCAATAACCTGCAGACAATCACACAGGGACAAAAGTGCAGTttatccatacacacacagcaagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117519 lncRNA downstream 4272 13645575 ~ 13647786 (-) True G99118
TU117412 lncRNA downstream 334050 13311405 ~ 13318008 (-) False LOC117597528
XR_004578307.1 lncRNA downstream 339712 13311395 ~ 13312346 (-) True LOC117597528
TU117133 lncRNA downstream 469508 13182343 ~ 13182550 (-) True G98790
TU117117 lncRNA downstream 516885 13129200 ~ 13135173 (-) True G98776
XR_003403491.2 lncRNA upstream 19319 13782775 ~ 13784737 (-) True LOC113534347
XR_003403492.2 lncRNA upstream 19319 13782775 ~ 13784674 (-) False LOC113534347
TU117539 lncRNA upstream 19336 13782792 ~ 13784697 (-) False LOC113534347
TU117568 lncRNA upstream 79363 13842819 ~ 13843229 (-) True G99165
TU117569 lncRNA upstream 80543 13843999 ~ 13844237 (-) True G99166
XM_026927136.2 mRNA downstream 8486 13612796 ~ 13643572 (-) False dennd4a
XM_026927135.2 mRNA downstream 8486 13612796 ~ 13643572 (-) False dennd4a
XM_026927134.2 mRNA downstream 8486 13612796 ~ 13643572 (-) False dennd4a
XM_026927133.2 mRNA downstream 8486 13612796 ~ 13643572 (-) True dennd4a
XM_026927280.2 mRNA downstream 63074 13583262 ~ 13588984 (-) False ints14
XM_026927442.2 mRNA upstream 22691 13786147 ~ 13789542 (-) True rpl4
XM_026927651.2 mRNA upstream 34168 13797624 ~ 13805174 (-) True lctlb
XM_034305074.1 mRNA upstream 43528 13806984 ~ 13809993 (-) True snapc5
XM_026927443.2 mRNA upstream 43528 13806984 ~ 13809991 (-) False snapc5
XM_026927417.2 mRNA upstream 192977 13956433 ~ 13961386 (-) True aagab
trnaq-cug_10 other downstream 6578 13645409 ~ 13645480 (-) True trnaq-cug_10
XR_003403499.2 other downstream 89484 13550680 ~ 13562574 (-) True c6h15orf39
XR_003403539.1 other downstream 215083 13436901 ~ 13436975 (-) True LOC113534846
TU117111 other downstream 599747 13045823 ~ 13052311 (-) True G98770
TU116638 other downstream 1228080 12421102 ~ 12423978 (-) True akip1
XR_003403538.1 other upstream 1470 13764926 ~ 13765056 (-) True LOC113534845
XR_003403544.1 other upstream 20099 13783555 ~ 13783624 (-) True LOC113534852
XR_003403543.1 other upstream 23322 13786778 ~ 13786848 (-) True LOC113534851
XR_003403542.1 other upstream 23678 13787134 ~ 13787202 (-) True LOC113534850
XR_003403537.1 other upstream 24201 13787657 ~ 13787786 (-) True LOC113534844

Expression Profile