RNA id: XM_026927135.2


Basic Information

Item Value
RNA id XM_026927135.2
length 7525
RNA type mRNA
GC content 0.48
exon number 30
gene id dennd4a
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13612796 ~ 13643572 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCAGCCCAGCGCATCCCAAAGCGGCCAGCCGCGAGGTTGTGGTGACGGCCGTGTCGAAGAATACAGAATTtgatacataaatatataaagaatttgtttgtttgttggtaaAAAATGTCAGATAAGAGCTGTAGGTGGTATAAGAAATACTAATGTTTCAAGCTGAGTAAGAACGCGGCTGAGCTTCAATGAACTGATCATCACAGCGCAGCTCTACTGAAACCCTctactgttttctctctctatggGGAAGCTAGAAGATGGAGGACAAAAGCCCACGTGTAGCAGACTACTTTGTGGTGGCGGGCCTCACTGAGTCCTCAGAGCCCTTTGAAGAGGACATAACATGTGATGAAAGCTGCCAGAGGAGCTCAACACAAGCCGAGGCTCCAATCACAGATGTGGCGGTGGTGTTTCGCTCTCAGGGCGAGGAGGTGCCGCAGGGCTACACCTGCATCGAGTGCACTCCCTCGGGCCTTCCCGCTGAGCTGAACGGAGGCAGCATCATTGGCCCACAGATCTTCTTGTGCTACAGGCGAGGACGAGACAAGCCTCCTCTCACTGACCTTGGTGTCCTCTATGAGTGGAGGGAGAAGTTGAAGCCTGGATGTCACATCATCCAAACCACACCTTCCGGTCGCCCTGCCAACATCAGCAGCTCTTCCTCACAGAGAATCTACATCACATACCGCCGTGCGCCCGAGTGTCATTCTCATGCCACGTTGGCCGTCACAGATATTTGTGTTATCATTCCCGGCAAAGGAGAAACACCACCATATGCCTTCTGCAAAGTGGACAAAAACCTGAACAGCAGCATGTGGGGGTCCTCTGTGTACCTGTGCTACAAAAAGTCTTTGGCCAAAACGAACACTCTTGCATTCAAAGCAGGCCTGCTGTCACGGTACCCAGAAGAGGACTATGAATCGTTCCCTTTGCCCGAGTCAGTGCCCCTCTTCTGTCTGCCAATGGGAGCATCCATAGAGTGCTGGCCGTCTCAAACGAAATACTCTCTCCCTGTATTCTCGACATTTGTTCTCACTGGAGCTTCTGGAGAGAAGGTTTATGGTGCAGCGATCCAGTTTTACGAGATGTACCCAGAAGAACGTCTGACTGATAGACAGCGCACACAGCTGGGCCTGCAAGAAAGTGGCCTAAGGGCTGAGGACTCCATGATGGTCCACACCAACAAGAGCATCTGCCTTCTTTCTCACTGGCCCTTTTTCGACGCTTTCTGCACTTTCCTCACCTTCCTCTACCGCTACTCAATTTCTGGGCCTCACACATTGCCCATTGAGAAGCATATCTCTCATTTTATGCACAAAGTTCCTTTCCCATCTTCTCAAAGACCACGCATTCTGGTCCAGTTATCTCCACACGATAACCTCATGCTGAGCCAGcctgtctcctctcctctgcctCTGAGTGGTGGAAGTCTCTCCACGCTGCTGCTAAACCTGGGTCCTAAAAACGCTGTAACTCTGCTGGTTCTGGCTGTGACCGAGCACAAGATTCTGGTGCATTCACTGCGGCCAGCTGTGCTAACCAGTGTTACCGAGGCTCTGGTGTCAATGATCTTTCCCTTCCACTGGCCATGCCCATACATTCCCCTGTGCCCGCTGGCGCTGGCCGATGTGCTCAGCGCTCCATGCCCCTTCATAGTTGGTGTGGACTCACGCTATTTTGACCTGTATGAGCCACCAGCTGACATCAGCTGTGTGGACCTGGACACCAACACCATCTCACACAAAGAAGATCGCCGAGCCCTGACATGGAAGATCCTGCCAAGGAAAGCCTGCAAACGTCTGATCAACACCCTCAGCAATCTCCATCAGCAGCTGGTGCAGGATTATTTGCTGAGTCGTGAGGAAGGCCAGATAGATGCAGCTATGAGTGAGCGAGACCCTGACAGCGGGGAGAAGAGTCTCCAGGCGCTGGAGATAGAGATCCAAGAAGCCTTCCTGCGCTTCATGGCAGCCATCTTAAAGGGTTACCGCTCCTACTTGCTTCCTATTACTCAGGCTCCCTCAGAAAAAGCAACTGACGCCAGCTCTCTCTTTGACCTGCAAGGATTCTTAAAGAGCCGTGATCGCTCTCATCAGAAGTTTTACTCCCTCATGACCAAGACTCAGATGTTCATCCGCTTTATTGAGGAGTGCTCCTTTGTCAGTGATAAGGATGCAAGCTTGGCATTTTTTGATGACTGCGTAGACAAGGTTGACAGTGAGAGGCCGGAAGACACCAGACTTATTGAGTTGGACAAATCACATCGCAGTGAGCACACGGTGTTCATCACACCTCCAGAGCTTCCTCCTGTGCCCGAGGGAGAGGAGCCATCCATACTTTATAgctACAGCGGCTTTCCCGTGCTGAATGCTGAACTCTGTGAACCCCAGGAGGGCCCAGGCATCCCTATGACAACCTCAAACTCCAGACACACCAGCCCTGGGAGCCCAGCTGCCATTTTCCGCCGCTCCAAACAGGAGATTAAATCAGCCCAGCGCATGGCCAAGACATACTCATCCATACCTCACATGTGGTCCAAGTGTCTGCTGCGCCACTGCCATGGCCTGTGGTTCATCTGCCTGCCAGCCTATGTAGCAGCGTGCCACTCTAAGGTGCGGGCACTCCGAGCTGCCTACGATGTCCTGAGGATGATGCAGGACAAGAAGCTGCAGCCACCTGATGAGGTGTGTTACCGGATCCTGATGCAGCTCTGTGGGCAGTACGGGCAGCCAGTGCTGGCTGTTCGGGTGCTGTTTGAGATGAAGAAGGCTGGAGTTCAGCCCAATGCCATAACATACGGATATTATAATAGAGCGGTGTTGGAGAGCACATGGCCTTCGTCCACTAGAGGGGGCTATTTCCTGTGGGGTAAACTGCGCAACGTGGTCCGGGGTGTGGTTCAGTTCAAACAAGTGTGGAGGAGACAAGCTAGACATGCCAAAGATCCCCATCTCTCAGACGCCAGTGATCTGGACAGCGTTAGCCACGGCAGTCTGGACAGCACGAATGACTCAGCAGAGAGAGCCTCTATCGATACTGACTTCACCAAAATGGACTCCAGCGATGATGGATCCAGCACAGGTGGACAATCAGATCAGGGCTATGACTCATTGTCTAAAGAGGAGGTGCGGCTGGGGGGAGGAGAAGAGCAGGACAGCTCTCCTCACatgaaggagatgaaggagagagacagcatTCCACTGGCCAAGACAGGAACATCTATAAAAAAGGACTCATCTCCTGCACTGAGACCACTATATCCCTCAGGTGTAAGGGACAGTGCATCTGTACCCAAACGTCCCAACTCACTGGACATCTTTGGAAAAAATACTGTGAGGCCCAGTACATTAGTGCTGACGTCTGATCAGCTGCTGAATGTCTCTGAAGGGTGTGAACAGAAGCAAACTTATCCAGATGAAGAGGAGGTAGAGGAAGCAACAGGCACCACATACCCACTCAAACCTGCTGCAGAGAGGAGCACAAGTTGCACAGTTGCCACGGAGACTAGCATTAGCAATGCACACTGCAGCGTGGCACGGAGCGTGAGCTTCAGCAGCACTCTAGGTCGTGTGCCTCAACGAACAGGGATCGAATCTGGCTTTGATCCGTTGTCCCTTCTGGCAGCTGAGAGAAAGGCCGGCAAGCCAGATGAGCCAGGAGATACAGATGATGCCCCTGGCACACGCCGTCACCTGGCTGAGGAGATCCAGCTTCACATGGAGCACCTGAGCAGCCCTGTGAGTCAGCGTTCACTCAGCACAGATCTACGCAGTATCCAGAGCTCCTCGCCACACAGCTCGCCTCGCCAGACTGCTGTGCCAGGATCGCCAAGCACCCAGGTGCAACCCCAGCCCCGGAGCAGACTGTTCTCCTCGCCCTCACTGCCACTGGGATGTCCACGTAGGAGCAAGGAAGCCCGGCCCACCTCATTAGCATCACCCTCCTCACCCACCCCTTCTGCCTCCTCCTTCTCCATGGAATCCCTGCTCACACCTACACTAGATGTCTTTAGGAGCAGCTTCATGTCTGCAGGCAAGGGCATGGCTGAGAAAGCTAGCCGTCTCTATTCAAGGCTCTCCTCACAGACTTCCATTGCACAGGCGAGTCCAAATgacCTGAACTCTGATCGGGTCAGCGTGTCTTCACTGGGCTCAGGTGAGCCCGACAGCTCCTCTCTGTTTGAGGGTGAACTCTGTCCTGACCCAGAAGGTCTTTCCTCCCCCCAGAGAGATGCCTCTCTCAGCATCACTCCCTTCAAAAGGAGTCCAAACAGGAACAGCTGCTGCTTAGAGAGTCCTTCTGCGCCTCCCAGGCTTTTCCGCCAGGCCTCACTCctcgGATCGTCACTGGCAGTAGTGAAAGCCCCACAAACCCCAGATGTGTGTCCTGATGCCAGCCCCACACCAGCCCAGCAAAATTATGACATAGAGGTGCGCATGTCCAGTTGCTCACGCTGCAACACCTGCGAGTGCCTGGCGTATGATGAGGAGATCATGGCTGGCTGGACAGCTGATGACTCCAATTTGAATAGCACTTGCCCTTTCTGTGGCTCAGCCTTCTTGCCCCTGCTTAATGTGGACATTCAAGACTTGACCAGCCAGGACAGAATTCCTTTTCAAGACCTGCCTAGTTCCCAGACGGAAAAAAATGATGCTTCAGAGATTGAGGAGGAGCCAAGCAGTGAATCCACAGACAGTGCCTCCAACAGTGCTAGCAGTAGCACAGAGCCAATCACCGTGCCCTACTTGAGTCCTCTGGTGCTGTGGAAGGAGCTGGAGAGCCTCTTGGAGAATGAGGGCGAGCAGGTTATCTCCTCACCAGCCATTGTGGACCACCACCCCATTGTCTTCTGGAATCTGGTGTGGTTTTTCCGCAGGCTGGAGCTGCCCAGCAGCCTGCCTGCCCTCATCCTTAGCTCCAAGCACTGCAGCCAGAACATTCAGATTGATCCACAGCCTCTCCAGAGCAGTGCCTCAGAGGACAGTAAGAATGTGTTAGTCCAGATTTTGTGGGACAACCCCAAACTGCACCAGGACCCTATCCCACCCTGCTACATGCTGTGGAATGCACACTGTTCAAACTCTAATGTTTGTGTCTCCTCCTTGCTGGAGGAGAAACAGCCTGTGAGCCTGGAACTTCTCCAGAGTGTTGTCAGGAGCATTCAGAAGAACGATGTCTACCAGCCCATGAGCCAGATACTTCAGCTGCTTGGTACAAGGCTAGGATTCATCAGGCAACGGAGCCTGTATAGAGATATCCTATTCTTGACGTTGGTGGCATTGGGCAAGAACAATATCAACATTGATGCTTTTGACCGTGAGTACAAGTTGGCGTATGATCGACTGACCCCCAGCCAGGTCAAGCTGACTCACAACTGTGACCGCCCGCCCGGCGCTGGAGTCATGGAGTGTAGGAGGACTTTTGGGCTGCCGAGTCTGTGATTTCTCTCATCCTGTGGttctccatcttcttctttctctccctccatcaccCAGAGGAAGAGATGTGAAATCTGAGACAGCCAAAGAAGAAGGATTCACTACTACCAAAGCTACCTCTGGCTCTGAATAGGGCCATGTAGACTCTTAGAGACATTTCCGAGCTCTCTGTTAAAACCAACAAGTGTGTGGCTCATTCCCATTTACTGTGTACTACCTTTAAACACTATGTCATATAttgtaaatgtttctgtttaccTCAGAACAGATCCCCTAAATCCCCTAAATTTAATAATCCCCTAAATTTCCACCTTCTTCACATTTCATTCTTAATTCCTGcttcacatttaaacatttagcCTCACTCAGGTAATACTTACTACCGAGGCCATTGTAGATTAGGAGCAATATCATCTAGTGCCCAAGGCATGgcatcactcatcaccattAAATCACATAGAGAGGATCGTGGAGTGGTTTTGGGACCAGTAGCAgtatgtattttattgtttaggACCCTTAGTAGAAAAGCACAATGAACAAATCCCAATGAGATTTTGAAGTTTCCTCACATTCCTCTCACAGTATTCTAGAGGCACTTGtatattaacacaaaaaaattcacttttctGTATATAGcctattattctattatttagAATATTTGTATTATAAAGGTATATTTTAAGACTTGTATTTGTTATAATTGAGTTGTCTTCATATGTAAAGACAGTACCAAGCAgtgtattggttttaatttgCAAGTGTGTTGTCTATGAATATGGTCCTGGAGACCATGATCGTGATATCTGTGAAGCGTATTGTCTTTTGAATAGATGAGGTACAGAACTGGACCAAATCAGATGTTAACTCATGAATTACATGACTGTTTATGAGGAGTGACAAAAGGTGactgtaataatatataaatattgtaaatcAACTAAGCAACTAAAACAATGCCTTATAAAAGGTCAAATGAGCTGCAGAACTGGATGAAGACCAACTAAAAATGCATAGAATACATACTCTCTTAGATATTAGGGATGCACCAATACTATAACTGCAGGCTACAAATAATTTCCTTGCCCACATAAGCTGGTGCATGTATTTTAGAATTGTTTTAGATTAAAACATACATATGGACAGTTTGGCATCTTACTAAACACATTAAGGGAATACTTAGTAAGGTCCTCTCAGACAGTTGCcatgttttcaatatttttcttttcttttcttttaaatgtctttatgtAGGACATGAGCTAGTGGCATCATTTTAGCATTACGCAAAAGTTAAATCCACATGTACAAATATAGACATGTTTACAAATTGGCAGCTTTCTGCTGTTGGAGCGTTTGatttcaataatttttttcacattttatttaatatatgtttatgGTACAATTTGAAATGGTACGAAATTATGGTACCTGAGACAAAATTTACAGATATAAAGAGCACATGAGCAAGTCTGTTATATCTGAGTGATGAATTTAAATGTTAGCTGcagcaaatatatatttacatagcTTAATCTAACTTAATTTGCTTTGGTAATATTAATTGGTAATATTAATTTAAGCtacactttattactttattgtattattacacAGTCTACAGTTATGAACTGTTACATATTATGCATTGTATGCATTACACATAGTGTGAGATGTTAGCTATAATGAAGAATACCACTCCAAAGAATTATAGTCTAATCATTTTGACCAGATGCTGTGCAGATTTATAAAATTTGATGCCCTGACACTGCCATTCATGATTTTGCCTGTTTTCTATATCCTAAATCCTTATCTGCATCACTAAAATCTAACTGGTGTTTTGAGTGGCAAGCCacttaaaattatatttcagtATGTGTAATAATTTCAATATTGTTGAAAGTTGGTTTATGAAATGATTTTTGTAAGCTAAAGTACTGTTGTGGCCCAATGTGTTTTACACATATCATTTCTTGTGTTTATTCCTGTTAATATTGTATAGTCCTTATTTCGCCAGATCAAGTTGGGATCTGCAAAAGCTGtttataactgtaaataaactcaCTTGAATGGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117412 lncRNA downstream 294788 13311405 ~ 13318008 (-) False LOC117597528
XR_004578307.1 lncRNA downstream 300450 13311395 ~ 13312346 (-) True LOC117597528
TU117133 lncRNA downstream 430246 13182343 ~ 13182550 (-) True G98790
TU117117 lncRNA downstream 477623 13129200 ~ 13135173 (-) True G98776
TU117108 lncRNA downstream 584199 13027458 ~ 13028597 (-) True G98767
TU117519 lncRNA upstream 2003 13645575 ~ 13647786 (-) True G99118
TU117536 lncRNA upstream 89379 13732951 ~ 13768470 (-) True G99134
XR_003403491.2 lncRNA upstream 139203 13782775 ~ 13784737 (-) True LOC113534347
XR_003403492.2 lncRNA upstream 139203 13782775 ~ 13784674 (-) False LOC113534347
TU117539 lncRNA upstream 139220 13782792 ~ 13784697 (-) False LOC113534347
XM_026927280.2 mRNA downstream 23812 13583262 ~ 13588984 (-) False ints14
XM_034305364.1 mRNA downstream 23962 13583262 ~ 13588834 (-) False ints14
XM_034305365.1 mRNA downstream 24542 13582928 ~ 13588254 (-) True ints14
XM_026927282.2 mRNA downstream 36979 13571853 ~ 13575817 (-) True ppcdc
XM_026927299.2 mRNA downstream 50222 13552448 ~ 13562574 (-) False c6h15orf39
XM_026927092.2 mRNA upstream 8486 13652058 ~ 13763456 (-) False megf11
XM_026927093.2 mRNA upstream 8486 13652058 ~ 13763456 (-) False megf11
XM_026927089.2 mRNA upstream 8486 13652058 ~ 13763456 (-) False megf11
XM_026927090.2 mRNA upstream 8486 13652058 ~ 13763456 (-) True megf11
XM_026927442.2 mRNA upstream 142575 13786147 ~ 13789542 (-) True rpl4
XR_003403499.2 other downstream 50222 13550680 ~ 13562574 (-) True c6h15orf39
XR_003403539.1 other downstream 175821 13436901 ~ 13436975 (-) True LOC113534846
TU117111 other downstream 560485 13045823 ~ 13052311 (-) True G98770
TU116638 other downstream 1188818 12421102 ~ 12423978 (-) True akip1
XR_003403510.2 other downstream 1207515 12397687 ~ 12405281 (-) False znf143b
trnaq-cug_10 other upstream 1837 13645409 ~ 13645480 (-) True trnaq-cug_10
XR_003403538.1 other upstream 121354 13764926 ~ 13765056 (-) True LOC113534845
XR_003403544.1 other upstream 139983 13783555 ~ 13783624 (-) True LOC113534852
XR_003403543.1 other upstream 143206 13786778 ~ 13786848 (-) True LOC113534851
XR_003403542.1 other upstream 143562 13787134 ~ 13787202 (-) True LOC113534850

Expression Profile