RNA id: XM_026927200.2


Basic Information

Item Value
RNA id XM_026927200.2
length 3612
RNA type mRNA
GC content 0.41
exon number 16
gene id tsnaxip1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15121047 ~ 15132206 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTCGCAACGTTATTGCTCAAGTCGCAATATAAACTAcgcaaaaaatattttaaatttaaaggaagagaagagaattattatctattttatttttattatatatttttatatatattattatatatataatatatatatttttaaatctacaCATGTCTGTAAAGAAGGACATCCATTTGCCACCACTGTCAGCGTTTGAAAGCAGGCTTTCGTCAAGCAAGGGGACTCAAGGGCAAGTGAGGTCTGTGCCAAAAATACTGAAAGTTACAGATGGATGTAGCCCTGGCTATCTTTCCACCTGGCCTGCCCATGTCAGCTCTCAGGTTGTTCAGCAACACAGTCAAAAACACACTTGCTCTGCAGCAAACAGAAACCACGGATACAGTGATGAATTTGGACGTACTGTAGCTAAGCCACGGTTCCTGGAACAGCTGGAGTGCTATCTCAGGAGAGAACTGGCATCTTTAGATATGCATAGTCCCAAACTCCAGCAGCTCAAACTTCAGGTATACCGAGAAGTTTTTGACTATTTTATTGAAGACTTTAAAACATACAAGCCACTATTGTCTGCCATCAAAAACGAGTATGAGATTACTCTAGTGTATCTGCAACAGCAGATCCAAGAGCTGGAGCCTCTCCGTGCCCAGATGGTGCTGCTGTCTGAACGGTGCGAGGAGAGGATTCTGGGCCTGAGGGAGCAAGAGAGAGCTGAGATCACGGCTTTGAAACAGGAGCGCCAACATCTGCAGCAAGTCATTGAGAGCATGAAGGAGCAACAGGCAGCTTTGCAGACCCAGGTTTCATATCTAGAGGAGGACCTTGCAAGACAGTATGCGCTGTACAGGGAGGAACGTGATGCCCGCAGGCTGCTCATTGACAATATCAGCAGCATGAGCTACAGCCCACAGGAGCCTGGTTACTCACTGAATGAGGATCCTGTGAATCTAAAGCTGGCTTTGGATGTGTGTAGAGAGGATCTAAACAAGGCCCAGATGGAGCTCAACCACTTGCATGCAGAATATGGAGATGTGGTTCCCCGTAGGGACTGGGAGAATCTAGAAAGTACGTACCAGGAGAACCTCCTAAAGCTGGAGACCCTACAGTCTGACTTCAACCAATTGAAGACGGAATATGACACGTTGCTAAATTTACATCAGCAGATCAGCACAAAGAGAGACAGCCTTCACAGAAAACCCTCAACTCCTAGACCACGGTGGGAGCAGTGTGCAGATGTACTTGGTAGTGGGGATCGCTGTTCTGAGCTCTTTGAGGGCCAGTCTAGTCAGAAAAGACTGGAGATCTTGCTGAAGGAACTGAACAGCATGGGCTTGGAGCAGAAAGACTTCTTTACTGGACTGGGTACTTCCAGCGATGTTCCCATCTACCTGCGCTATGAGGGGCAACAGAGGAACCTCCGATTGAAAAAGAATGACATTGTTAGAGTTCTAAAGGACATATGGAGAGAGAAAGCATCTGAAGATGAGAAGAAGGATGAAAGCAGTGATCTAAAGGAGTTTCTGCATCAGTATCTGTTAAAGCAGCATAAGGAGAGGGCAGGACAGTGGGCTTACAGCCTGATCGATGGCATCAAGCAATACCTAGATGATGCCTTCATTGGTCTCTTCTATGACATTCTCCAAGGCAAGGTGGATGAAAGTGTGTACCATGGCCAGACCCATCTACTGTCTCATCTGCTCAAGGTGCTTATACAGAGTGACAGCACTGAGAGTGGATTGCTAAGTACACCCCAATTCAGTGAGGCTCTGAGGACAGCTTTCCCCCTGAAAGGAGATAAGGATATAGAGGAACTGGTGCTGGCTGCTCAGTCAGAACTGCAGACCAGCCGAGGAAGCATTGCCTATCAGAGGCTGTACACAGAGGACGCAGATGGAAAGCAGAGTGATTTCCTGGGTCTGGTAAAAAAGCAGGCTATGGCCGAGAGACGCCAGTACATCAACCAGCTGAGGGAACAGCTAGGAGGAAAAGGGGAAGTGGGAGTGGAAGATTTAAGAGCTGTTTTCAAGACAATTGATCCCACACTGGACTCTGAGACTCTGGACTGTTATTTGAGTACGGCCTTTCAGACTAAAGAGCTGCACCAGCACACAGCACTTTTGGACACTGAGGTTGCTCTACAGCGCCTCTCTGCAGCTAATGTAAGCAGGGCAGGACCCATGCCTCAGTCGGAATaattcatttacacacatttcacatgtgtAAATGGACtcttatatttaaacataatcaaGGAAATATACtggataaatttttttttaaatctaataaaaagaATACATTCACAGTCTACTCTTCAACATGatgtttaaaggtgcattaggtaagattagtctttttttttcaagagtaTGTATCTTAACAGTTAGTTGGGTTTGACAACTATCATATGAATGATTCctgcccatgttcacaaagctccgtCCCCGTTATCTACGGTGGCCTGTAGAGTGTctaaaaaaatgactgacaggaggcgcatccaaacacaaacaagcattctggacaggaagtcagttttccaaatgagTTTTCTCATGGACTTAATGCACTTTTACTAAGGCCATGGCTTAAtgcataggttttttttttttaaaaaatttttatcaCGTCCTACAtgtcttccaggttatttgtacaagtaaagaattttaaaaaatgactattgCATCTTTAAGGAAATCTTAAGATAACGGTAACTGATCACAAAAATGGCTTAATGAGAGAGTGTTTTATATCCTCATAACACCCCACTGTCCTCACATCAAAACATCACATGTTCTCCTAAAATCTATGTGCTTGTAAGATCCTCATGAGGACAACTGGGTCTTACTAtttttccaaacttcttccagtTTGAAGACATTGATCAATTTCTATAGTTATCAGGTGTGAGTAAACAGAAATAGTGAGGAGATACAATATTATTGTACAGGTTTCAAGAGAGTATGTTCAGTAGGATATATAGCAGTGTAGGGCTCGAGGTTTAAAAACTGGTGATCAGTAAACACTGACATGCATAGCCTATTGTAATCACATTAAAACTGGTGTATCTAATATGAGCTAGTTTTAACTGTACTATTGTTAACTTATTCTTTCAGCACATATATCCAGGTACTAGTACTAGTGATGTTGACctattaaactttatttatttaaactttattttggcTTATAAACTTTATTACACTGTTGCCTTTGTTATTGGGCTGataaaaaatatagaaacatGGGACTGGGACCAACTAGTTAGAAAAACACTATTGACACTATTGAATAAGACACTATTGAAAATGCCTGTAATACTTGTGTACAATGAGAACATGATGATGGTgactataaaaatgtttataatgaaatgaattgaaacagtattacactgtttactttttacattaTCGGACACTTTTATTTAGTGTTGAGTGTTCTTATGTGGTGAGGAATAACAATGCTCATAGACCTAGCATAcaatatatgcagtatatactgtatgtacttttCAGTGTAGCGTATGTAGAAATTCCTTCTAAAACGTTgctcatatacagtactgtgcaaaagtcttaggcacatgtaaagaaatgctgtagagcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117973 lncRNA downstream 472054 14648078 ~ 14648993 (-) True G99493
TU117962 lncRNA downstream 517575 14601223 ~ 14603472 (-) True G99482
TU117933 lncRNA downstream 585037 14533820 ~ 14536010 (-) True G99453
XR_003403487.2 lncRNA downstream 601263 14510924 ~ 14519784 (-) True LOC113534271
TU117912 lncRNA downstream 667940 14448856 ~ 14453107 (-) True G99433
TU118323 lncRNA upstream 19012 15149403 ~ 15150315 (-) True G99780
TU118318 lncRNA upstream 29812 15160203 ~ 15168426 (-) True G99775
TU118330 lncRNA upstream 40920 15171311 ~ 15173434 (-) True G99784
TU118350 lncRNA upstream 45784 15176175 ~ 15180912 (-) True G99801
TU118481 lncRNA upstream 167214 15297605 ~ 15299578 (-) True G99915
XM_026927495.2 mRNA downstream 1329 15105315 ~ 15119718 (-) True nutf2
XM_026927338.2 mRNA downstream 15937 15075874 ~ 15105110 (-) True edc4
XM_034305053.1 mRNA downstream 48552 15043298 ~ 15072495 (-) True nrn1la
XM_034305455.1 mRNA downstream 94179 15018958 ~ 15026868 (-) True pskh1
XM_034305368.1 mRNA downstream 105910 14988788 ~ 15015137 (-) True mbtps1
XM_026927748.2 mRNA upstream 46820 15177211 ~ 15200248 (-) True pard6a
XM_034305486.1 mRNA upstream 218257 15348648 ~ 15357563 (-) False tmem170a
XM_026927032.2 mRNA upstream 218257 15348648 ~ 15354663 (-) False tmem170a
XM_034305488.1 mRNA upstream 218257 15348648 ~ 15354192 (-) False tmem170a
XM_026927033.2 mRNA upstream 218257 15348648 ~ 15352739 (-) False tmem170a
XR_003403523.2 other downstream 774039 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 1332200 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 1332848 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 1333261 13787657 ~ 13787786 (-) True LOC113534844
XR_003403542.1 other downstream 1333845 13787134 ~ 13787202 (-) True LOC113534850
TU118530 other upstream 216775 15347166 ~ 15354637 (-) True tmem170a
XR_004578368.1 other upstream 2956264 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 3057056 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 4220371 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 4849678 19980069 ~ 19980259 (-) True LOC113527007

Expression Profile