RNA id: XM_026927202.2


Basic Information

Item Value
RNA id XM_026927202.2
length 2352
RNA type mRNA
GC content 0.52
exon number 15
gene id ranbp10
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15131265 ~ 15170919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTGCGCGCCTGACTGTAGAGCGTTGGTTATCCGGGGATATCGCTACTGCTATTTCTCCTCAGTCTATCGTTCTGCCTTTTAGAAGATTGACACAACTAGGTAGGGAacaacaaagaaaggaaaacaaaacacaacccaAAAAATGGCAGAGCTTGGAGCAGGCAGCCTGTTACAGGGGGATCCTGCTTTAACTGACCAAGAGCAGGAGCTAAACGAGCGTTTGAAGCGGCTCTATCCGGCCGTGAACGAGGAAGAGACCCCCTTACCCCGGTCGTGGAGCCCCAAGGATAAATACAGCTACATCGGGCTGTCGCAGAACAATCTGCGGGTACATTATAAAGGTCACGGCAAAAACCACAAAGACGCAGCATCCGTGCGAGCTACCCACCCAATCCCCGCTGCCTGTGGTATCTACTACTTCGAGGTGAAGATTGTCAGCAAAGGGAGGGATGGGTACATGGGCATTGGACTGTCCGCCCAGGGGGTCAACATGAACAGACTGCCGGGCTGGGACAAACACTCCTACGGTTACCACGGTGATGATGGGCACTCCTTTTGCTCCTCAGGGACCGGCCAACCATATGGGCCCACCTTCACGACGGGTgatgtgattggctgctgcGTGAACCTCATCAACAACACGTGCTTTTACACTAAGAACGGACACAGCTTGGgTGTGGCCTTCACAGACCTCCCAcCCAACCTGTATCCTACAGTAGGGCTACAGACTCCTGGAGAGATTGTAGACGCTAACTTTGGCCAGCATCCTTTTGTGTTCGACATCGAGGACTATATGAGCGAGTGGAGGGCAAAGATCCACAACATGATCGCTCGTTTCCCCATCGGAGAGAGACTCGGAGAGTGGCAGACAGTGCTGCAGAATATGGTATCCAGCTACCTGGTGCATCATGGGTACTGCGCTACTGCCATGGCCTTTGCCCGAGCCACAGAGACCATGATACAGGAGGACCAGGCCTCCATAAAGAACAGGCAGAGAATACAGAAGCTGGTATTGGAAGGTCGTGTTGGAGAGGCGATCGAAGCCACACATCAGCTGTACCCCGGACTCCTAGAACGCAACCCCAATTTACTCTTCATGTTGAAGTGTCGGCAGTTTGTGGAGATGGTGAATGGTACAGACAGTGAGGTACGATGCTTTAGTGTCCACTCCCCCAACAACCAGGACAGTTATTCCGGTTCCCCAAGCCTTAGCCCCCGGCACGGAGCCACCAACCCCCACCTGCACAGCACAGACAGTCCCACATGCAGTAATGGTGTGACGCCTTCTAACAAAAACAAAGGCCACACCAAATACCCCGGAGCTGGCTCCGCCTCCTCTTCCCCTTCCTCCTCACCTTCCTCTGTCAACTATTCTGAGTCCAACTCTACAGACTCCACCAAGTCCCAGCCACACAGCACCACCAGCAACCAGGAAACCAGtgaTAGTGAGATGGAGATTGAGGCGGAGCACTACAGTAATGGTGTGGCCGAGAATTCCTCTACCCGCATCATGAACGGCACTTACAAGCACCAGGAGATCATACAAGGGGACGACAGCAGCGTGGGCAATGGAGTAGCAGAGGACAGCTGTGGCTCGAGGCAGCTGTGTGGGGGTAACCAGGCTGCCACGGAGCGCATGATCCAGTTTGGCCGCGAGCTGCAGGCGCTCAGTGAGCAACTCTCACGCCAGTATGGCAAGAACGCCATGCATAAGAAGATGCTGCAGGATGCATTTAGTCTACTGGCATACTCGGACCCATGGAATTGCCCAGTGGGCCAGCAGCTGGACCCCACACAGAGAGAGGCCATCTGCTCTGCTCTCAACAGCGCCATCTTGGAGTCTCAGAATTTACCCAAGCAGCCCCCCCTCATGCTGGCACTGGGGCAGGCCACCGAGTGTGTGCAGCTCATGGCCCGTGTGCGCTCCGGCTCCTGCTCATTCGCCAGAGTCGACAACTTTTTGCACTAGCCCAAGTCCAGGCAATGTTCAGGACAGTTAAGAAGAGGACTTTCCAGCCGGTTGCCATGAGGAACACGCTTGTTTGAAACAGTGCATTCACTTGCCGCAGGCAGTTCGGATGAGAGATGACTAGACACATGGAGGAGAGGcttctttttaatttagtattattaaatacaaactGTGTGACACTATTTAAAGgcaattaattattattctgtttatctagtcatttttattttagtttctatTTTGTCAGTTTGTTGTGCTCGCCTTGACATTGAACCAGAATTCCCTTCTTTGTTTTTATGGGTGGATTCAGTGCATAGTATTCCAGACACACACCATATTGAGGGTAATACATAGCAGTAAAGTCTTTTCAAATTCTAA

Function

GO:      GO:0008536

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118234 lncRNA upstream 72494 15055267 ~ 15058771 (+) True G99705
TU118233 lncRNA upstream 104179 15026487 ~ 15027086 (+) True G99704
TU118023 lncRNA upstream 401082 14729984 ~ 14730183 (+) True G99518
TU118021 lncRNA upstream 405327 14725618 ~ 14725938 (+) True G99516
TU117806 lncRNA upstream 499904 14630335 ~ 14631361 (+) True G99362
TU118304 lncRNA downstream 413 15171332 ~ 15173435 (+) True G99766
TU118332 lncRNA downstream 5317 15176236 ~ 15180771 (+) True G99786
TU118362 lncRNA downstream 44472 15215391 ~ 15215716 (+) True G99813
TU118368 lncRNA downstream 52730 15223649 ~ 15223854 (+) True G99819
TU118435 lncRNA downstream 279900 15450819 ~ 15455039 (+) True G99879
XM_026926983.2 mRNA upstream 162258 14885256 ~ 14969007 (+) False necab2
XM_026926982.2 mRNA upstream 162258 14885257 ~ 14969007 (+) True necab2
XM_034305422.1 mRNA upstream 253786 14784940 ~ 14877479 (+) True hydin
XM_034305421.1 mRNA upstream 317717 14784940 ~ 14813548 (+) False hydin
XM_026927058.2 mRNA upstream 421838 14695777 ~ 14709427 (+) True chka
XM_026927222.2 mRNA downstream 44131 15215050 ~ 15291450 (+) False ripor1
XM_026927221.2 mRNA downstream 59515 15230434 ~ 15291450 (+) True ripor1
XM_026927220.2 mRNA downstream 79881 15250800 ~ 15291450 (+) False ripor1
XM_026927163.2 mRNA downstream 121005 15291924 ~ 15299579 (+) False ctcf
XM_026927165.2 mRNA downstream 121057 15291976 ~ 15299579 (+) False ctcf
TU117779 other upstream 606785 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 1090483 14035230 ~ 14040782 (+) False skor1b
TU117337 other upstream 1341875 13785095 ~ 13789390 (+) False G98972
TU117309 other upstream 1415499 13691607 ~ 13715766 (+) True G98946
XR_004578350.1 other upstream 2275712 12837299 ~ 12855553 (+) False nlrc5
XR_004578337.1 other downstream 129563 15300482 ~ 15345968 (+) False carmil2
TU118902 other downstream 1178538 16349457 ~ 16349787 (+) True G100306
TU118951 other downstream 1429338 16600257 ~ 16601067 (+) True G100345
XR_004578324.1 other downstream 2229507 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 2318627 17489546 ~ 17493092 (+) False LOC113539654

Expression Profile