RNA id: XM_026927242.2


Basic Information

Item Value
RNA id XM_026927242.2
length 4345
RNA type mRNA
GC content 0.44
exon number 10
gene id slco3a1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16764695 ~ 16816272 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGTGGTGTAGTGTGTACGACAGGaagccagcagcagcagagccGCACTGGATCTAAACACGCATAGCGGGGTGCAGTTGGAAGCCCTGACCATTTTTAGACGAATCGAAGCCGCTACatgacaaacaaaaaatgcagctaaaGGAAGCCGGCGTTGGATCTTCAGATTCCTGAAGCGCTCCCGCTTGCCTGTTTTGCCTCCTCATTCATCGTTGTTGGCGGTTCAATGAGCGCAGACAGTCACACCGCTAAACTACAGGGCTCTGACTAGAAATAGTCGCACTCGCCCATTTAAGCCGAAAGACTACGGAAAAGGCAGCTTAAAGAGGCTGGGGAAACGTTTCTGGTGTCCTATGTTGATCCGTTTGGTTCCTAAGCCAAGCCTCTAAGCTCAGCGATTTTGCCAGGGCAGGTGAAAAGGCGGAGGAGCTCGGACATGagctccccacacacacagcgagaggacacgaataaaaaaacatcatgtttttCTAACATCAAAATATTTCTAGTGTCGGAATGTGCACTGATGCTGGCGCAGGGGACAGTCGGCGCGTACTTGGTGAGTGTCCTGACTACGCTGGAGCGCCGCTTTAACCTGCAGAGTGCTGACGTGGGTGTGATTGCCAGCAGCTTTGAGATTGGCAACCTGGCGCTCATACTGTTTGTCAGCTATTTTGGCGCCAGGGCTCACCGACCACGTCTGATCGGCTGTGGTGGAATTGTCATGGCATTGGGTGCGCTTCTATCTGCACTGCCTGAGTTTCTCACCAACCAGTATGAGTACAAAAGCACTGAAGTGTGGCGGAAGGAGCCAGGACGGGACATGTGCTCCAATGTGTCAAGGAGAGATGTGGAAGATGGTGGCCTATGCAGCAACAAAGCCAACACCAACATGATGTACCTGCTGCTGATTGGTGCCCAAGTGCTACTGGGAATTGGAGCGACCCCCGTACAGCCTCTGGGAGTGTCCTATATAGATGACCATGTGAGGAAAAAAGACTCTTCCCTTTATATTGGTATATTATTCTCAACCTTGGTTTTTGGACCTGCTTGTGGCTTCATCCTTGGTTCAGTCTGCACCAAATTCTATGTGGATGCTGTCTTTGTTGACACCACCAAGCTGGACATCACCCCGGATGACCCTCGCTGGATCGGAGCCTGGTGGGGAGGCTTCCTCCTCTGTGGGgctttactttttttctccGCTATCTTCATGTTTGGTTTCCCCTCATCTCTGTCAGAGCGATATGGGAACAGCAGGACAGAAAGTGACCAGCCCATGCTGCCTGCATCTCAGAGTTATGAGCATCCAAAGCCAAGTAATGGTGTCCTGCACAACCATCAACCTGACAGCTCCTGCTGTGATCAGCTTCGAGtTATTCCCAAGGTGACTAAACACCTGCTGTCTAACCCGGTGTTCACCTGTATTGTCCTTGCTGCATGTATGGAGATTGCTGTAGTTGCTGGTTTTGCTGCCTTCTTGGGCAAGTACTTGGAGCAGCAGTTTAATCTTACTACCACCTCGGCCAATCAGCTTCTGGGTATGACAGCCATCCCATGTGCATGTCTGGGGATTTTTATGGGCGGTCTTTTGGTGAAGAAGCTGAATCTGTGTGCTCTGGGTGCTGTTCGGATGGCCATGTTGGTCAACCTGATTTCCACCGCCTGCTATGTGTCTTTCCTCTTCCTTGGCTGTGACACAGGCCCTGTTGCTGGTGTGACCGTCGCCTATGGCAATGAaacACTGCAGCCAGGCCAAACACCAGAAGCTCCATGCATTAGTAACTGTAACTGCTACACATCATCGGTTAGCCCTGTTTGTGGCTCTAACGGAATCACGTACCTGTCCTCCTGCTTCGCTGGCTGCATCAAATCCAATAGCACTGGAGTGCTTCCTCGACTGGCTCAGCCCATGCAGAACCTGACAGGGTGTGCATGCATTTCTGGTGATGGCATTCCCTCCACAGTTGTGCCAGGCAAATGCCCAAGTCCTGGGTGCCAGGAGGCTTTCCTCATTTTCCTGTGTGTGATCTGTGCCTGCAGCATGATAGGAGCCATGGCTCAGACACCCTCAGTTATCATCCTCATCAGGACAGTCAGCCCAGAGTTGAAATCTTATGCACTTGGCGTTCTGTTTCTCTTATTGCGACTACTGGGATTCATCCCACCTCCTTTGATCTTTGGTGTGGGGATCGATTCCACCTGCCTGTTCTGGAGCAGCGAGTGCAACACAAAGGGTGCCTGCATGCTATATGACAACGTGGCCTATCGCCACCTCTATGTGAGCTTAGCCATTGTGCTAAAAATAATTGCCTTCCTGCTTTACAGCACCACATGGCAGTGTTTACGCTGCAACTACAAGAAGTACATCAAGAATAATGAGGTGTATGTGACATCCACTGAAATTTTCTCTTCTGATATTAATTTGGATAGCTTGGGCAAAGACATTAACAGGACAAAATTTATATACAACCTGGAAGATCATGAGTGGTGTGAAAACATGGAATCTGTTTTATAGTGGCTGGTACTTGttaatgcataaatatgcatCTTCTGAAGGATCACATTggttgtttattaatttttttcaaggaTAGCATTTGATTTCCTCCTTCTATGGTGATGTGTTTAAGGTGTCACTGGCCACTTTAGGAGACTGTTGCACTTTTTGAATTAATGGTAATCTTTTTTGGTCCATTGTGGTTCTTAGAAGATGCTTCAGAGGATGTACATTGTTCAGTTCCAGtgatgtacagtcaggtccataaatatttggacattgacatgGTTATTAtttgtctaccacagtatattgaagTTGAAATTAAGTAATGAGAATGAGTTCAAAATGcagaattacagcactttttataacTGCCCCCTTTTTAAGGGACAAAAAGTAATTgcacaaactaacaatcataaattaaattgtgatTTTAATACTCGGTTGCAAATTATTTGCAGTGAATGACTGCCTGAAGCCTGGAACCcatcaccagatgctgggtttcttccctactgatgctctgccaggcctttacagCAACCGTTTTCAgctcctgcttgttcttggggcatatGATGCATTTGGCTGAATCGGAGCAGATAATATTCCCTATATACAACAGAATGCATCCTGCTGTTTTTGTCAGCTGTCACATCAATAAAtaccagttccactggcagccacacatgcccatgccataagatgaggtcatatgctttggatcatgagcagttccttcccttctccaaatatttctcttcccatcattgtGGTTCAcattgatctttgtctcatctatCTATagtatattgttccagaactgtacaggcttttgtttagattttttggGGAAAACTTTAATCTGATCTTCCTGGTTTTGAGGtttaccaatggtttacatcttgtggtaaaccctctgtattcactctggtgaagacTTCTCTTGAtttttgactttgacacagatacgcctacctcctggagggtgttcttcATCTGGACAACTGGTGTGAAGAGGTTTTTCTTCACTATGGATAGAATTCTTCTGTTATTCACCAAGTTGTTTTCCATGCCTTTTGGTGTTCAAGAGCTCACCAGTAtgttctttttaagaatgtaccaaatagttgatttggccgCATCTactgtttttgctatctctgattggtttgttttgattttttagtCTAATGAttgcttgcttcactggcagtgacagctctttggacttaaTATTGAGAATTAACAGCAATAGATTCCAAATGCCCATCAAccctagaccttttatctgcttactaagtgaaataatgaggggaaaagtaatacaatataataatataatacctGGActtggaacagctgagcagccaattgtccaGTTACTTCTGGTCCCTTAAAAAGATAGGGACCacaagtgctgtaattcctacaccgctCACCCGATTTGGATGTAGGTACcctgaaattaaagctgaaagtttgcACATtgataatattgatattaacaCATTGctaatcattatttaaattcaactccaatatactatGGTAGACACCTAAAATACCAATATCtttgtcagtgtccaaatatttatggccCTGACTGTATGTTATAGTTGGTAGTTGAAGACAGCTGCTGTATAACTACAAACTAGGCTGGTAATAACCTTGACTTAGATCAGTTTTCCATACTAAGTTTCAATAAGTATaccataattttatttttctcagtttGTATGAAGAAGTCACATGAAACTATTTAACAGAGCAGTTAGGTTGATAACctgaataaaaactgaaatagcaataaaaatagctatatatatatatat

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14353 SLCO3A; solute carrier organic anion transporter family, member 3A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118968 lncRNA upstream 4161 16760311 ~ 16760534 (+) True G100362
TU118966 lncRNA upstream 6352 16758139 ~ 16758343 (+) True G100360
XR_004578304.1 lncRNA upstream 8716 16751007 ~ 16755979 (+) True LOC117597522
XR_004578303.1 lncRNA upstream 8716 16753234 ~ 16755979 (+) False LOC117597522
XR_004578302.1 lncRNA upstream 8716 16753234 ~ 16755979 (+) False LOC117597522
TU118977 lncRNA downstream 6096 16822368 ~ 16823102 (+) True G100370
TU118986 lncRNA downstream 122463 16938735 ~ 16939728 (+) True G100379
TU119104 lncRNA downstream 155558 16971830 ~ 16972238 (+) True G100480
TU119131 lncRNA downstream 194443 17010715 ~ 17024228 (+) True G100499
XR_004578316.1 lncRNA downstream 221779 17038051 ~ 17039276 (+) True LOC117597540
XM_026927763.2 mRNA upstream 84160 16657601 ~ 16680535 (+) True rgma
XM_034305372.1 mRNA upstream 253716 16500760 ~ 16510979 (+) True LOC113534621
XM_034305369.1 mRNA upstream 504522 16259445 ~ 16260173 (+) True LOC113534692
XM_026927790.2 mRNA upstream 908583 15812514 ~ 15856112 (+) True mctp2a
XM_034305538.1 mRNA upstream 955579 15723423 ~ 15809116 (+) True mef2aa
XM_034305391.1 mRNA downstream 22603 16838875 ~ 16928642 (+) True srpra
XM_034305393.1 mRNA downstream 22604 16838876 ~ 16928642 (+) False srpra
XM_034305394.1 mRNA downstream 22604 16838876 ~ 16928642 (+) False srpra
XM_034305392.1 mRNA downstream 23397 16839669 ~ 16928642 (+) False srpra
XM_026935710.2 mRNA downstream 162663 16978935 ~ 16983976 (+) True ppp1r15b
TU118951 other upstream 163628 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 414908 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1418727 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2240215 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 2723913 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 584154 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 673274 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1731653 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1735174 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1782442 18598714 ~ 18599375 (+) True G101419

Expression Profile