RNA id: XR_004578337.1


Basic Information

Item Value
RNA id XR_004578337.1
length 4999
RNA type misc_RNA
GC content 0.53
exon number 40
gene id carmil2
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15300482 ~ 15346146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGCACTTTGTAAGAACTGCCGTTGCTGGCCTCTTATGCACCCTGTTCATGCACACAGAGCAGATTAAAGTGTGATGGCGTCTCCAACAGAGGTTCCCTTCTGCCTGAAAGatggCATTATTCAGCTGCTGAAACCTCAGAGGGTCCAGTTTATGAGGTTTGTACAACTCAACCAGTCGAGGGATCGGTCAGAAGGCAGAGTCCTTgtAATGACACAGTGGAGAGCTACTGTATTTCACAATAAGCAGCCAGTGAAGGTGGAGAGCTCCTTCAGCTATTTAGAGATCTATGCCATCAGCATTGAGAGTCATGACCAGGTGACTATTGAAACGGACAGACAGATTTATTCTCTCAGCCTGATGTCAGTGGAGGATCTGGAGGCTGTGGTCAGTCATGTGGCAGCCTCGCTCAAGAAAATCTTCCCCGATTCGTCCCCAGGgaaacTATTAAAGAAGGTCCCTCCTGATCTTCAGGAGAGGTTGTGGGGTCTGACCTCTAAAGTTGAAGAGCAGCTGAATGGAGCGCAGAAGCCATGTGGGGGATTCTCAGACACATACGCCGCGCTGTGTGACTTCAACGACTTCCCATGTCGCGAGGAAGTCCAGTGGGACGTAGACAATATCTACCATGTTCAGAATTGTCAAGAATTCAACCTTCTGGACTTCAGTCACTTAGAGAGCAGAGATCTGGCATTGGCTGTAGGTGCTCTGTCCTTCAACCAGTGGTTCACCAAGATCTACAGCAAAGATTTTAAACTGacactAGATGTTCAGGAGCAAGTGATCTACCTCATTAGCAGGTCCACAGCTCTGCAGGAACTGAGTCTGGAGGCCAGTGGACTTAAAGTGGATTTTGCCGTAAAGATGGCTTGTGCTCTTCATGACCAACCTGCCTCTGCACTGCGTACCATCAACCTGTCGTCTAACCCCATAGAGGATAAAGGTGTAATGGCGCTCAGTCAGAGCTGGGCACGACTATCTCCTGGTCTCAGTCAGCTCTATCTGTccaaggtctctctctctcctaaagGACTGGGCAGTATCGCTCAGGTGCTCCACCAGAACAAATCTTTCTCAAAATCACTAACACATCTGGACCTGAGTGGGAATACAGGATGTCTGGCTACAGAGGATGCCGTGAGTCTCTTCAGTTTCCTGTCGGCCCCCAATGTTGTGTCCCGTCTGGACCTCAGCTCTACTGACTGCCCTTTGGACACCctctttgtgtctctctctgctggtTGCTGCACTACTTTAACCCACCTCAACCTCTCCAAGAACATTTTCTCACATAGGAAGGTACGGGAGGTAACACGAAGTGTGAGAGACTTTTTCACAAAGAGCATGGAGCTAAAGTACGTTGGATTGTCTGGGACTAGACTACTTCCAGAAGCCCTGAGGTTATTACTCCAGGGCTTGGCCACCAACAGTTATCTGTCTGAGCTGGAATTGGATATTAGCAGCTGCGAgCTGAAGTCCAGTGGAGCACAGGTCATTCAGGAGCACATCTTTGAGGCAAAGGCTATCTCCAGCCTGGATCTATCTGACAACGGCTTTGAGAATGACATGGTGACTCTGGTGCTTTCCATCGGCCGCAGTCATTCAATACGGCACCTAGCTCTCGGACGCAACTTTGCCATGAAGTCTAGAGCTCTGACAGATGTTCTGCACCGAATCGTACAGCTCATCcaggaggaggagtgtCCATTGGAGTCTCTATCAGTGTGTGACTCCAAGCTGAAGACAGGCACCACCATCCTCATCAACAGCCTGGGCAGCAACTCCAGCCTCTCCAAAATTGATATCAGTGGAAACTGTATTGGAGACACTGGTGCTAAGATGCTAGCTAAAGCTTTGATTATCAACACCAAACTCAAAACACTGGTTTGGGACAGAAACAATGTGACTGCCACAGGTTTCATGGATGTGGCCAACGCTCTGGAGAGgAACACCACACTACAACACATGTCCATACCCATGAGTGATATGACTCAGTCCTACCGAACCAACCCAGAGAAGACTGAAGAGGCAATGAGGAAGatccAGATGTGCTTACGGAGGAACAGTCAGAAGCTGTGCATTACATCAGATCAAATGCTGAATCTTCAGCAAGGTCTAAAGACCAGCCGCTCAGAACAGCTAGTGCAGAACTTCTGTCAGAGGCTTCAGGAGACCATGAGGCCTCTGGCCTGCTACAACATCCAAGAAGTCCAGACTGATATCCTGTCTGCAGAGGAAGCTCTCCAGCATGCCAGGACAGCCATTGTATTTCTACCCAGAATCTATGAGTTGGGAAGGTCGACCTCTGCTGGTTCAATGATGCAGCACATTCTGGATGACGCAGCCAAAGCTATAACCAGTGAGCTGGCTGGGGAAATCCAGGAGCAAGCTCAGGCCATGCTGCAGTCTGCACAGGCCGCCTGCCCTCGGGTCGTCCAGAGGACAAGTGTGAACGAGCAACTGGCCAATCGCGTGGCCAACAAAACACGACAGGCTGCCCATTTTGTCCAGAGCATAGTAAAACAAGCAGAGAGTAGCATTGCAGAAAagctcagCGAACTGAAACTGTCAGTCAGCGTCTCTCTGGTGGAGAGTATCATCGAAGAAGTTCTGCAGGACTTGTCAGTGGCGCAGCAAAAACTGGAGAAGCATTTAAAAGAGTACTCGCAGCCCTTAAACAGCAAGACCAATGTCCCACAGCTGAGAGTGGTGGAGCAAGTGTTCCCTACTGATGAGTATGTGTCTGGTATCTGGAGGAACAGTTTCTGTACCCGGAGCATCCGTCCTGCCCCGTCTGTCAAAAGTCTGCTGGAGACGGAAGGCGAGCAGCAGGCACGAGCGAGTGCGCAGTCCCAGCAGGAGatggagggagacagagagtcaggaggaggaggaggaggggtgtTGTCATTGGCGATAGGCCTGTCTGTCAACACAGGCCACACCCAGCTGGGGAGGGAGGTGGAGTTTGGTGGCTGTGGCGCTGGTCTTGTGGCCGCTCGTAGCAGCAGAGAGCCGCGGCGTCCCGAGCCCTCACCTCCTCAGCCCCCTATGGACCTGCCCAGCGAAGGCCACACGCTGAGGCACTACACCCGCTCCAGACCCCGACCCAATCGCCACCACAGGCAGCCACCCAGCAAGCCGCAGgaGCAGGCAGCTGAGAGTGAGAATGAAGCCAATGAGAATATGGGGAGGGTGGACGAGGGCGTAGAGGAGTTCTTCACCAAGAAGATCATCCCTGATGACCCCCTGAAGCACCAGAGGGAGGACGCCCTCAATAAAGCACAGTCTGCAGAGTCTACCTGTGGCACCACTTCCCCTCCGACCACCACCTTGACAACCTCCACGCCCTCCACAGCTCcgacaaaaaacataaagaagAAGTTTGGTGACTTTTTCGCCTTCAAGAAGGTCCGTGCAGGTCGAGGAACCAAAAGCGAGGGTGCACCGGAAGGAAAGGTCAAAAAGACTTCAATAGCAGACCTCATCCGACCACTCCGGGAGGCCGCACGTGCGGAGAAAGAGCGCgagaaggaaaaggagagagacaaggaaaaagagcgagagaaagaaaaagaaaaggagaaggagaaattGGAAGAAGAGAGCATCCTCAAGGCACCCAGCACTACTCCCACCATCACAGATTCATCCCCCACAGTACCAACTGTAGATGACAAAATGGCACCCTCACCCCTCTTCATGCCACTTTCTGCCCCATCAGCTGCCCCTGCCTCCACCCCCACCCCTCCCGCCTCCTCGCCTGCCAAAACTGAAGGAGTCCCAACATTGCCCCCTGCTGCACCCCTGACCCCAATCAAAACTCCCAGTCCAGTAACAGCCACGTTGCCCTTGGAGGGAGAGAAGAGCCGGACCCTAGAGAAGAGCCGAACCCCTGATGGAGAGAGGAGACCCAAGGCTACGCGCCGCTCACTTCGAGAGGGCAAATCTCAGTCCCTTATCCTGCTTACAGGACTGGAGCCAGGGCAGGACTCTGCAGCTACACAAGCTAAGaaacaCTCATCTGAAAGCTCCTCCACTTTTGAACAGCGGCTCCATGTTATGCTGCATCGCATGGGGGTCGCCAAGACACCCCCCTTCGACTCCAAAACGAGTCAGAGCAAAGAAGAGGAGCTGAGAAAAGCCAACTCAGAAGgGGCAATACTGGACAGCCAGCCTGAACCTCCACCCATGAAGCCACGCACCATGTCCACCTCTTCAGACACCAGACGGCCGGTGCGAGCAAGCAACACAGAACGCCCGCCACTCCCAGAACGACCTCTAGGCCCTTTACCCCCAAAACCGACCCTCAAACCCACCTTTATCCCCCCGGGTGAGACTCCTGTGGCCTCCAGAACCATCTCTCCAATCCCTAGGCAGCCCAGTCCCTCTCCAGATACTCCAACAACAGTGGTGGAGAGTAGAACTTCCTCCCAGTCTCAGACAAAGGAGCCTCCAACCCCTTCTCCACGAAAAGATACACCTCCAGCCCCTTCACCACGTAGGGTGCGTAGCACAGACCCCCAGGAGAGAGCAGAAAGAGCACAGTCGGTTACTGAAGAAACTCTCCCCAAACCGTGGCCTCGCATGAAGCCCTCACCTCAGCGCCGAGCCGTCTCCGTCCATGAGGACGCCCTACTCCAGCACGCTGCCCTGCTCGACCCTGAGGAGCTGAAAGCTGCATTGCCCCGACTCCAGAGGTCACCGATACGGAAGCGGGTAAACCTGGGAGAGCTGGAGCCCTGCTCGGAGGATTTGCCTGAGGGAGAGGAAGGTGAGCAGAGACTGATGCAATTAAGAGGGAGTTAATGAACGAGAGCTAGAGTCACAATGCACTAGTGATGTGTCTTTCATGAACGAGCTGGCTCTTTCAGCTAAATCAGCAGCGAGAGAACATCTCAGAGGACAGGctaaagagacagacagcacTACTGCCAACGATGGCCAGCGAGAAAAGAGTCTAGGTGGGACCGGTGAAGAAGAGACCATCCTGGAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118368 lncRNA upstream 76628 15223649 ~ 15223854 (+) True G99819
TU118362 lncRNA upstream 84766 15215391 ~ 15215716 (+) True G99813
TU118332 lncRNA upstream 119711 15176236 ~ 15180771 (+) True G99786
TU118304 lncRNA upstream 127047 15171332 ~ 15173435 (+) True G99766
TU118234 lncRNA upstream 241711 15055267 ~ 15058771 (+) True G99705
TU118435 lncRNA downstream 104851 15450819 ~ 15455039 (+) True G99879
TU118406 lncRNA downstream 121970 15467938 ~ 15468216 (+) True G99854
TU118450 lncRNA downstream 176052 15522020 ~ 15522724 (+) True G99893
XR_004578360.1 lncRNA downstream 262002 15607970 ~ 15609103 (+) True LOC117597598
TU118660 lncRNA downstream 325361 15671329 ~ 15734348 (+) True G100079
XM_026927163.2 mRNA upstream 903 15291924 ~ 15299579 (+) False ctcf
XM_026927165.2 mRNA upstream 903 15291976 ~ 15299579 (+) False ctcf
XM_034305345.1 mRNA upstream 903 15291982 ~ 15299579 (+) False ctcf
XM_026927168.2 mRNA upstream 903 15292126 ~ 15299579 (+) True ctcf
XM_026927222.2 mRNA upstream 9032 15215050 ~ 15291450 (+) False ripor1
XM_034305509.1 mRNA downstream 12435 15358403 ~ 15375400 (+) False cfdp1
XM_026927805.2 mRNA downstream 12437 15358405 ~ 15388947 (+) True cfdp1
XM_026927322.2 mRNA downstream 49135 15395103 ~ 15466212 (+) False bcar1
XM_026927323.2 mRNA downstream 90274 15436242 ~ 15467776 (+) True bcar1
XM_026927428.2 mRNA downstream 131498 15477466 ~ 15482137 (+) True nudt21
TU117779 other upstream 776002 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 1259700 14035230 ~ 14040782 (+) False skor1b
TU117337 other upstream 1511092 13785095 ~ 13789390 (+) False G98972
TU117309 other upstream 1584716 13691607 ~ 13715766 (+) True G98946
XR_004578350.1 other upstream 2444929 12837299 ~ 12855553 (+) False nlrc5
TU118902 other downstream 1003489 16349457 ~ 16349787 (+) True G100306
TU118951 other downstream 1254289 16600257 ~ 16601067 (+) True G100345
XR_004578324.1 other downstream 2054458 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 2143578 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 3201957 18547925 ~ 18548289 (+) True LOC117597608

Expression Profile